Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 3.3e-59 231.5 115 100.0
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 8.7e-28 127.1 99 73.7
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.5e-24 114.8 97 64.9
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 3.0e-20 102.1 107 56.1
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.6e-18 96.3 95 60.0
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 4.8e-18 94.7 98 54.1
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.3e-17 91.3 100 54.0
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.0e-16 89.4 92 56.5
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.6e-16 89.0 86 60.5
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 8.5e-15 84.0 99 51.5
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 1.1e-14 83.6 95 53.7
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.9e-14 82.8 106 47.2
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 4.2e-14 81.6 99 50.5
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 5.5e-14 81.3 98 51.0
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 9.4e-14 80.5 98 49.0
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 4.6e-13 78.2 99 47.5
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 4.6e-13 78.2 104 48.1
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 7.9e-13 77.4 98 52.0
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.4e-12 76.6 99 48.5
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.8e-12 76.3 91 49.5
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.8e-12 76.3 98 50.0
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.8e-12 76.3 99 46.5
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 2.3e-12 75.9 91 49.5
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.0e-12 75.5 90 51.1
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 3.9e-12 75.1 94 52.1
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 3.9e-12 75.1 95 49.5
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 3.9e-12 75.1 96 47.9
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 5.1e-12 74.7 96 49.0
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 5.1e-12 74.7 109 46.8
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 6.7e-12 74.3 100 50.0
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.1e-11 73.6 107 44.9
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 1.1e-11 73.6 100 45.0
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 1.1e-11 73.6 99 45.5
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.5e-11 73.2 109 45.9
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.5e-11 73.2 79 51.9
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.5e-11 73.2 105 44.8
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.0e-11 72.8 97 41.2
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.0e-11 72.8 97 41.2
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.0e-11 72.8 99 48.5
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 2.5e-11 72.4 101 47.5
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.5e-11 72.4 100 42.0
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 4.3e-11 71.6 92 44.6
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 4.3e-11 71.6 96 44.8
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 5.7e-11 71.2 91 49.5
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 5.7e-11 71.2 94 48.9
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 7.4e-11 70.9 90 48.9
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 9.7e-11 70.5 100 43.0
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 9.7e-11 70.5 101 45.5
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.3e-10 70.1 105 44.8
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.7e-10 69.7 107 43.9
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.7e-10 69.7 97 40.2
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 1.7e-10 69.7 99 47.5
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.7e-10 69.7 105 41.9
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 2.2e-10 69.3 106 45.3
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 2.8e-10 68.9 94 45.7
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.8e-10 68.9 107 43.0
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.7e-10 68.6 94 48.9
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.7e-10 68.6 90 47.8
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 4.8e-10 68.2 98 44.9
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 4.8e-10 68.2 89 50.6
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 4.8e-10 68.2 94 45.7
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 6.3e-10 67.8 95 43.2
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 6.3e-10 67.8 85 45.9
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.4e-09 66.6 107 43.0
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 1.4e-09 66.6 96 40.6
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 1.8e-09 66.2 96 46.9
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 1.8e-09 66.2 94 47.9
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 2.4e-09 65.9 99 43.4
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 2.4e-09 65.9 103 45.6
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.4e-09 65.9 104 46.2
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 2.4e-09 65.9 96 46.9
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 3.1e-09 65.5 107 43.0
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 3.1e-09 65.5 101 41.6
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 3.1e-09 65.5 91 48.4
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 5.3e-09 64.7 86 47.7
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 5.3e-09 64.7 96 42.7
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 5.3e-09 64.7 100 43.0
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 6.9e-09 64.3 126 37.3
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 6.9e-09 64.3 99 45.5
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 6.9e-09 64.3 99 40.4
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 6.9e-09 64.3 92 47.8
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 2.0e-08 62.8 33 84.8
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 2.0e-08 62.8 89 49.4
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 2.0e-08 62.8 94 43.6
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 2.0e-08 62.8 87 44.8
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 2.6e-08 62.4 95 46.3
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 2.6e-08 62.4 99 46.5
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 2.6e-08 62.4 101 43.6
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 2.6e-08 62.4 99 43.4
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 3.4e-08 62.0 97 42.3
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 3.4e-08 62.0 100 47.0
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 5.9e-08 61.2 101 39.6
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 5.9e-08 61.2 32 84.4
Oeu011717.2 Olea europaea HOM05D004965 ORTHO05D004401 5.9e-08 61.2 86 44.2
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 7.7e-08 60.8 46 69.6
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 7.7e-08 60.8 93 43.0
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 7.7e-08 60.8 102 44.1
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.0e-07 60.5 101 38.6
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 1.3e-07 60.1 106 38.7
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.7e-07 59.7 101 38.6
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 1.7e-07 59.7 98 39.8
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.8e-07 58.5 101 37.6
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 3.8e-07 58.5 91 41.8
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 5.0e-07 58.2 97 40.2
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 6.5e-07 57.8 101 37.6
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 6.5e-07 57.8 86 44.2
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 6.5e-07 57.8 105 42.9
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.5e-07 57.8 90 36.7
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 8.5e-07 57.4 90 44.4
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 8.5e-07 57.4 47 59.6
DCAR_007120 Daucus carota HOM05D004965 ORTHO05D004401 1.1e-06 57.0 100 43.0
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 1.1e-06 57.0 92 41.3
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 1.4e-06 56.6 107 36.4
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 1.4e-06 56.6 91 40.7
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 1.4e-06 56.6 90 40.0
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 2.5e-06 55.8 91 39.6
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 3.2e-06 55.5 54 55.6
Sabra08G0145000 Salix brachista HOM05D004965 ORTHO05D004401 4.2e-06 55.1 80 47.5
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 5.5e-06 54.7 95 41.1
arahy.Tifrunner.gnm1.ann1.91285J Arachis hypogaea HOM05D004965 ORTHO05D004401 9.4e-06 53.9 89 42.7
BcaC08g45847 Brassica carinata HOM05D010176 ORTHO05D012455 9.4e-06 53.9 94 38.3


User provided reference genes

Program Settings