Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 2.8e-123 445.3 224 100.0
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 1.4e-82 310.1 214 78.0
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 2.6e-76 289.3 227 69.6
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 3.3e-71 272.3 226 66.4
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 7.3e-71 271.2 233 65.2
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.4e-69 266.9 227 60.8
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 8.3e-67 257.7 227 59.0
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 7.1e-66 254.6 233 57.5
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 7.1e-66 254.6 212 63.7
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 3.5e-65 252.3 227 61.2
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 1.7e-64 250.0 180 68.3
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 1.7e-64 250.0 224 60.3
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 4.3e-63 245.4 236 54.7
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 5.6e-63 245.0 236 55.1
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 3.6e-62 242.3 220 60.5
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 6.2e-62 241.5 230 57.8
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 5.2e-61 238.4 208 61.5
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 8.9e-61 237.7 216 59.3
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.7e-59 233.4 217 59.0
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 4.9e-59 231.9 228 56.1
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.1e-58 230.7 222 55.9
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 1.4e-58 230.3 218 58.3
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 7.1e-58 228.0 236 55.1
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 1.2e-57 227.3 228 54.8
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 1.6e-57 226.9 218 58.7
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 1.0e-56 224.2 217 58.1
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 3.9e-56 222.2 178 60.7
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 1.9e-55 219.9 225 53.8
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 1.9e-55 219.9 178 65.7
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 9.6e-55 217.6 221 53.4
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 9.6e-55 217.6 214 57.9
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 6.2e-54 214.9 223 54.3
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 1.1e-53 214.2 217 52.5
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 1.4e-53 213.8 229 52.8
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.8e-53 213.4 234 53.4
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 2.4e-53 213.0 229 52.4
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 5.2e-53 211.8 223 52.5
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 5.2e-53 211.8 223 52.5
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 2.0e-52 209.9 178 62.9
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 2.0e-52 209.9 221 53.4
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 2.6e-52 209.5 225 51.1
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.4e-52 209.1 204 54.9
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 9.9e-52 207.6 179 59.2
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 2.9e-51 206.1 177 58.8
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 4.9e-51 205.3 216 56.0
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 4.9e-51 205.3 180 62.8
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 8.4e-51 204.5 219 57.1
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.9e-50 203.4 204 53.4
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 1.9e-50 203.4 219 50.2
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 2.4e-50 203.0 220 49.5
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 5.4e-50 201.8 206 53.9
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 5.4e-50 201.8 230 49.6
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 9.3e-50 201.1 216 54.6
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 2.1e-49 199.9 216 54.6
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 3.5e-49 199.1 225 52.9
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 7.8e-49 198.0 227 51.1
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 1.0e-48 197.6 225 51.1
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 6.6e-48 194.9 231 52.8
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 8.7e-48 194.5 215 52.6
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 8.7e-48 194.5 178 60.1
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 1.9e-47 193.4 221 52.5
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 2.5e-47 193.0 216 53.7
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 4.3e-47 192.2 303 42.6
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 1.3e-46 190.7 201 54.7
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 6.2e-46 188.3 230 48.3
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 8.1e-46 188.0 180 54.4
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 8.1e-46 188.0 215 49.3
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.1e-45 187.6 268 45.5
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 4.0e-45 185.7 230 47.0
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 5.3e-45 185.3 211 47.9
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 9.0e-45 184.5 228 49.6
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 2.6e-44 183.0 226 46.9
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 3.4e-44 182.6 229 46.7
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 1.7e-43 180.3 179 57.0
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 4.9e-43 178.7 188 54.8
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 8.4e-43 177.9 138 63.0
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 2.4e-42 176.4 142 68.3
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 1.2e-41 174.1 225 44.4
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.5e-41 172.6 224 46.9
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 7.9e-41 171.4 228 46.5
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.3e-40 170.6 226 44.7
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 1.7e-40 170.2 220 45.9
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 8.7e-40 167.9 225 43.1
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 7.4e-39 164.9 228 44.7
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 1.6e-38 163.7 196 49.5
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 2.1e-38 163.3 139 60.4
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 6.2e-38 161.8 198 47.0
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 8.1e-38 161.4 188 46.3
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 4.0e-37 159.1 182 50.0
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 2.0e-36 156.8 227 42.3
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 1.3e-35 154.1 136 57.4
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 2.2e-35 153.3 185 45.9
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 2.1e-33 146.7 174 48.3
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 4.6e-33 145.6 220 39.5
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 1.3e-32 144.1 170 45.9
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 1.6e-30 137.1 176 42.6
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 9.0e-29 131.3 169 47.9
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 1.5e-28 130.6 147 53.1
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 7.6e-28 128.3 209 41.1
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 1.3e-27 127.5 145 46.9
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 1.0e-24 117.9 105 62.9
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 1.1e-23 114.4 169 39.6
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.3e-22 110.9 144 45.8
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 7.6e-20 101.7 174 37.4
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 5.0e-19 99.0 89 60.7
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 3.6e-17 92.8 114 45.6
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 2.5e-15 86.7 74 55.4
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 2.5e-15 86.7 74 55.4
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 1.4e-13 80.9 123 35.8
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 1.4e-10 70.9 84 41.7
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 2.1e-09 67.0 152 34.9
CARHR292590 Cardamine hirsuta HOM05D007009 ORTHO05D008451 1.7e-06 57.4 40 65.0
BcaB01g02975 Brassica carinata HOM05D020738 ORTHO05D008451 2.2e-06 57.0 100 35.0
BcaB02g10960 Brassica carinata HOM05D000397 ORTHO05D000492 6.3e-06 55.5 82 39.0


User provided reference genes

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