Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31119 Davidia involucrata HOM05D003535 ORTHO05D003986 9.3e-151 537.0 294 100.0
Dinv24911 Davidia involucrata HOM05D003535 ORTHO05D003986 1.1e-95 354.0 292 73.6
CSS0008340 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 2.6e-92 342.8 295 67.5
CSS0014348 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 7.5e-92 341.3 295 67.1
vmacro16290 Vaccinium macrocarpon HOM05D003535 ORTHO05D003986 3.1e-85 319.3 296 62.5
Actinidia15000 Actinidia chinensis HOM05D003535 ORTHO05D003986 1.9e-82 310.1 289 62.6
Hma1.2p1_1049F.1_g251850 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 3.0e-80 302.8 351 53.6
Rhsim12G0125300 Rhododendron simsii HOM05D003535 ORTHO05D003986 2.1e-78 296.6 328 57.3
Duzib251G0917 Durio zibethinus HOM05D003535 ORTHO05D003986 4.7e-78 295.4 303 59.7
Thecc.02G240800 Theobroma cacao HOM05D003535 ORTHO05D003986 5.2e-77 292.0 301 60.1
Hma1.2p1_0160F.1_g070560 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 6.8e-77 291.6 297 58.9
Prupe.1G260800 Prunus persica HOM05D003535 ORTHO05D003986 1.2e-76 290.8 305 57.4
Duzib251G0037 Durio zibethinus HOM05D003535 ORTHO05D003986 7.6e-76 288.1 303 59.7
Atru.chr11.1948 Acer truncatum HOM05D003535 ORTHO05D003986 2.9e-75 286.2 302 56.3
Ciclev10032090m.g Citrus clementina HOM05D003535 ORTHO05D003986 3.0e-72 276.2 302 54.0
Duzib248G0495 Durio zibethinus HOM05D003535 ORTHO05D003986 1.5e-71 273.9 329 55.3
Potri.008G193300 Populus trichocarpa HOM05D003535 ORTHO05D003986 4.3e-71 272.3 313 54.6
Actinidia27767 Actinidia chinensis HOM05D003535 ORTHO05D003986 7.3e-71 271.6 300 56.0
Rhsim12G0050600 Rhododendron simsii HOM05D003535 ORTHO05D003986 6.2e-70 268.5 291 57.0
vmacro01199 Vaccinium macrocarpon HOM05D003535 ORTHO05D003986 1.4e-69 267.3 298 55.0
Cfa009095 Carpinus fangiana HOM05D003535 ORTHO05D003986 5.2e-69 265.4 303 53.8
Gohir.A12G142200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 6.9e-69 265.0 299 55.9
Gohir.D12G147100 Gossypium hirsutum HOM05D003535 ORTHO05D003986 1.5e-68 263.8 299 53.2
Manes.01G195800 Manihot esculenta HOM05D003535 ORTHO05D003986 1.5e-68 263.8 304 53.0
MD16G1085300 Malus domestica HOM05D003535 ORTHO05D003986 3.4e-68 262.7 304 54.6
Gorai.008G158300 Gossypium raimondii HOM05D003535 ORTHO05D003986 9.9e-68 261.2 300 52.3
CiPaw.05G145800 Carya illinoinensis HOM05D003535 ORTHO05D003986 2.9e-67 259.6 303 53.5
Manes.05G092900 Manihot esculenta HOM05D003535 ORTHO05D003986 1.6e-65 253.8 306 51.0
Gohir.A04G098600 Gossypium hirsutum HOM05D003535 ORTHO05D003986 2.1e-65 253.4 302 54.3
Gohir.D04G138200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 6.0e-65 251.9 302 54.3
GSVIVG01020154001 Vitis vinifera HOM05D003535 ORTHO05D003986 7.8e-65 251.5 300 49.7
Gorai.012G123100 Gossypium raimondii HOM05D003535 ORTHO05D003986 1.0e-64 251.1 302 54.3
Actinidia08185 Actinidia chinensis HOM05D003535 ORTHO05D003986 2.3e-64 250.0 294 54.1
QL03p067125 Quercus lobata HOM05D003535 ORTHO05D003986 2.3e-64 250.0 309 52.8
Potri.010G036500 Populus trichocarpa HOM05D003535 ORTHO05D003986 3.9e-64 249.2 306 52.9
Haze_12127 Corylus avellana HOM05D003535 ORTHO05D003986 1.1e-63 247.7 328 50.6
Actinidia04050 Actinidia chinensis HOM05D003535 ORTHO05D003986 1.9e-63 246.9 231 64.1
FvH4_4g35140 Fragaria vesca HOM05D003535 ORTHO05D003986 1.3e-62 244.2 308 49.7
FAN12G2559 Fragaria x ananassa HOM05D003535 ORTHO05D003986 1.8e-61 240.4 310 50.6
PGSC0003DMG400015612 Solanum tuberosum HOM05D003535 ORTHO05D003986 3.1e-61 239.6 375 44.3
Sopen05g002290 Solanum pennellii HOM05D003535 ORTHO05D003986 5.3e-61 238.8 372 44.4
Eucgr.B02565 Eucalyptus grandis HOM05D003535 ORTHO05D003986 9.0e-61 238.0 303 49.8
Lj2g0022595 Lotus japonicus HOM05D003535 ORTHO05D003986 4.5e-60 235.7 308 48.7
TAR629G0129 Trochodendron aralioides HOM05D003535 ORTHO05D003986 4.5e-60 235.7 295 52.5
FAN07G1389 Fragaria x ananassa HOM05D003535 ORTHO05D003986 3.8e-59 232.6 319 47.3
Solyc05g006320.4 Solanum lycopersicum HOM05D003535 ORTHO05D003986 3.8e-59 232.6 372 43.8
Sabra10G0028600 Salix brachista HOM05D003535 ORTHO05D003986 7.1e-58 228.4 308 49.7
TWI18G1263 Tripterygium wilfordii HOM05D003535 ORTHO05D003986 1.2e-57 227.6 336 45.5
arahy.Tifrunner.gnm1.ann1.Y99B41 Arachis hypogaea HOM05D003535 ORTHO05D003986 4.6e-57 225.7 296 48.6
Psat2g113240 Pisum sativum HOM05D003535 ORTHO05D003986 7.9e-57 224.9 308 47.4
MD13G1085900 Malus domestica HOM05D003535 ORTHO05D003986 1.8e-56 223.8 303 48.8
Sabra08G0146800 Salix brachista HOM05D003535 ORTHO05D003986 2.3e-56 223.4 331 47.1
RcHm_v2.0_Chr4g0444731 Rosa chinensis HOM05D003535 ORTHO05D003986 3.0e-56 223.0 319 46.4
MELO3C002939.2 Cucumis melo HOM05D003535 ORTHO05D003986 1.9e-55 220.3 302 46.4
TWI36G0475 Tripterygium wilfordii HOM05D003535 ORTHO05D003986 5.6e-55 218.8 324 45.4
FAN22G0047 Fragaria x ananassa HOM05D003535 ORTHO05D003986 7.4e-55 218.4 319 46.7
CsaV3_5G025420 Cucumis sativus L. HOM05D003535 ORTHO05D003986 9.6e-55 218.0 305 44.9
SalBow2G1585 Salvia bowleyana HOM05D003535 ORTHO05D003986 2.1e-54 216.9 348 43.4
FAN17G0780 Fragaria x ananassa HOM05D003535 ORTHO05D003986 3.6e-54 216.1 344 43.6
Cc11_g14150 Coffea canephora HOM05D003535 ORTHO05D003986 4.8e-54 215.7 357 42.9
ClCG09G022140 Citrullus lanatus HOM05D003535 ORTHO05D003986 6.2e-54 215.3 334 43.1
Oeu018841.2 Olea europaea HOM05D003535 ORTHO05D003986 1.1e-53 214.5 270 49.6
Ca_18085_v3 Cicer arietinum L. HOM05D003535 ORTHO05D003986 3.1e-53 213.0 305 45.2
arahy.Tifrunner.gnm1.ann1.FE2K59 Arachis hypogaea HOM05D003535 ORTHO05D003986 9.0e-53 211.5 310 45.5
MSTRG.630 Avicennia marina HOM05D003535 ORTHO05D003986 9.0e-53 211.5 357 40.9
VMungo1215G1093 Vigna mungo HOM05D003535 ORTHO05D003986 9.0e-53 211.5 308 47.4
TPR.G13941 Trifolium pratense HOM05D003535 ORTHO05D003986 1.2e-52 211.1 306 44.8
Lalb_Chr16g0382501 Lupinus albus HOM05D003535 ORTHO05D003986 3.4e-52 209.5 306 44.4
Nn3g17007 Nelumbo nucifera HOM05D003535 ORTHO05D003986 7.6e-52 208.4 297 47.8
Nn4g22912 Nelumbo nucifera HOM05D003535 ORTHO05D003986 9.9e-52 208.0 295 47.8
Phvul.002G076000 Phaseolus vulgaris HOM05D003535 ORTHO05D003986 1.7e-51 207.2 308 45.8
Migut.L01454 Erythranthe guttata HOM05D003535 ORTHO05D003986 1.1e-50 204.5 351 39.9
Medtr5g035810 Medicago truncatula HOM05D003535 ORTHO05D003986 1.1e-50 204.5 312 43.9
Sed0012956 Sechium edule HOM05D003535 ORTHO05D003986 1.4e-50 204.1 301 44.2
MBI14_g12776_MAGBIO Magnolia biondii HOM05D003535 ORTHO05D003986 3.2e-50 203.0 296 48.3
Glyma.01G036700 Glycine max HOM05D003535 ORTHO05D003986 1.8e-48 197.2 311 44.4
Glyma.02G029300 Glycine max HOM05D003535 ORTHO05D003986 2.3e-48 196.8 314 45.2
Lsat_1_v5_gn_8_162680 Lactuca sativa HOM05D003535 ORTHO05D003986 3.0e-48 196.4 348 44.0
PGR119G2209 Punica granatum HOM05D003535 ORTHO05D003986 1.5e-47 194.1 301 41.9
Sc11g0001410 Simmondsia chinensis HOM05D003535 ORTHO05D003986 3.1e-45 186.4 286 45.1
arahy.Tifrunner.gnm1.ann1.KT3LL4 Arachis hypogaea HOM05D003535 ORTHO05D003986 9.0e-45 184.9 315 42.5
CAN.G159.17 Capsicum annuum HOM05D003535 ORTHO05D003986 1.5e-44 184.1 358 38.8
Hund25313 Selenicereus undatus HOM05D003535 ORTHO05D003986 1.5e-44 184.1 309 43.4
DCAR_007109 Daucus carota HOM05D003535 ORTHO05D003986 2.0e-44 183.7 440 35.9
THA.LOC104824671 Tarenaya hassleriana HOM05D003535 ORTHO05D003986 2.6e-44 183.3 331 39.6
THA.LOC104822953 Tarenaya hassleriana HOM05D003535 ORTHO05D003986 3.5e-41 172.9 362 35.4
MSTRG.7864 Avicennia marina HOM05D003535 ORTHO05D003986 3.9e-40 169.5 362 34.5
arahy.Tifrunner.gnm1.ann1.95J0BI Arachis hypogaea HOM05D003535 ORTHO05D003986 3.3e-39 166.4 341 40.2
AUR62039423 Chenopodium quinoa HOM05D003535 ORTHO05D003986 5.7e-39 165.6 303 42.6
Dinv33673 Davidia involucrata HOM05D003535 ORTHO05D003986 3.7e-38 162.9 297 39.4
SGA_v2.0_scaffold166G38327 Striga asiatica HOM05D003535 ORTHO05D003986 3.7e-38 162.9 345 35.4
EL10Ac6g13752 Beta vulgaris HOM05D003535 ORTHO05D003986 8.2e-38 161.8 304 41.1
GSVIVG01007821001 Vitis vinifera HOM05D003535 ORTHO05D003986 1.4e-37 161.0 292 41.8
CiPaw.06G075600 Carya illinoinensis HOM05D003535 ORTHO05D003986 9.0e-37 158.3 208 49.0
AUR62026558 Chenopodium quinoa HOM05D003535 ORTHO05D003986 1.5e-36 157.5 303 38.9
TAR622G1103 Trochodendron aralioides HOM05D003535 ORTHO05D003986 4.5e-36 156.0 243 45.3
Aqoxy3G00881 Aquilegia oxysepala HOM05D003535 ORTHO05D003986 5.1e-32 142.5 341 39.9
HanXRQChr12g0371191 Helianthus annuus HOM05D003535 ORTHO05D003986 8.7e-32 141.7 369 34.7
AL2G29460 Arabidopsis lyrata HOM05D003535 ORTHO05D003986 3.3e-31 139.8 201 45.8
Carub.0002s1687 Capsella rubella HOM05D003535 ORTHO05D003986 5.7e-31 139.0 209 45.0
HanXRQChr17g0546981 Helianthus annuus HOM05D003535 ORTHO05D003986 5.7e-31 139.0 403 33.5
ECA233G0946 Erigeron canadensis HOM05D003535 ORTHO05D003986 9.7e-31 138.3 431 29.9
Thhalv10018424m.g Eutrema salsugineum HOM05D003535 ORTHO05D003986 2.8e-30 136.7 208 45.2
Hund05943 Selenicereus undatus HOM05D003535 ORTHO05D003986 2.4e-29 133.7 315 36.2
Nitab4.5_0010523g0040 Nicotiana tabacum HOM05D003535 ORTHO05D003986 3.1e-29 133.3 126 54.8
PSO161G0011 Papaver somniferum HOM05D003535 ORTHO05D003986 3.1e-29 133.3 294 38.4
AT1G70180 Arabidopsis thaliana HOM05D003535 ORTHO05D003986 6.9e-29 132.1 201 44.8
Nitab4.5_0000257g0080 Nicotiana tabacum HOM05D003535 ORTHO05D003986 6.9e-29 132.1 126 54.8
PSO478G4390 Papaver somniferum HOM05D003535 ORTHO05D003986 6.9e-29 132.1 304 38.8
Sp5g25300 Schrenkiella parvula HOM05D003535 ORTHO05D003986 6.9e-29 132.1 200 45.5
C02p27320 Brassica napus HOM05D003535 ORTHO05D003986 2.9e-27 126.7 202 42.1
Aa31LG4G10720 Aethionema arabicum HOM05D003535 ORTHO05D003986 3.8e-27 126.3 237 40.9
BolC2t08793H Brassica oleracea HOM05D003535 ORTHO05D003986 6.5e-27 125.6 202 42.1
BraA07t30753Z Brassica rapa HOM05D003535 ORTHO05D003986 6.5e-27 125.6 202 42.6
CARHR063250 Cardamine hirsuta HOM05D003535 ORTHO05D003986 6.5e-27 125.6 202 45.0
A07p31200 Brassica napus HOM05D003535 ORTHO05D003986 2.5e-26 123.6 202 44.1
BcaB03g15532 Brassica carinata HOM05D003535 ORTHO05D003986 7.2e-26 122.1 201 41.8
BcaC08g45838 Brassica carinata HOM05D003535 ORTHO05D003986 2.1e-25 120.6 209 40.2
BolC6t38746H Brassica oleracea HOM05D003535 ORTHO05D003986 2.1e-25 120.6 209 40.2
GSVIVG01032539001 Vitis vinifera HOM05D003535 ORTHO05D003986 2.1e-25 120.6 201 42.8
C06p36250 Brassica napus HOM05D003535 ORTHO05D003986 3.6e-25 119.8 209 40.2
Hma1.2p1_1975F.1_g309720 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 3.6e-25 119.8 296 35.5
Peaxi162Scf01141g00123 Petunia axillaris HOM05D003535 ORTHO05D003986 4.6e-25 119.4 161 44.1
BcaC03g15159 Brassica carinata HOM05D003535 ORTHO05D003986 6.1e-25 119.0 204 42.6
Os04g0465000 Oryza sativa ssp. japonica HOM05D003535 ORTHO05D003986 7.9e-25 118.6 313 35.5
A02p16370 Brassica napus HOM05D003535 ORTHO05D003986 5.1e-24 115.9 195 44.1
BraA02t06696Z Brassica rapa HOM05D003535 ORTHO05D003986 5.1e-24 115.9 195 44.1
COL.COLO4_37887 Corchorus olitorius HOM05D003535 ORTHO05D003986 1.1e-23 114.8 130 52.3
Cpa.g.sc5.338 Carica papaya HOM05D003535 ORTHO05D003986 2.0e-23 114.0 138 52.2
ATR1101G092 Amborella trichopoda HOM05D003535 ORTHO05D003986 7.4e-23 112.1 300 36.7
PGR044G1333 Punica granatum HOM05D003535 ORTHO05D003986 2.2e-22 110.5 330 35.2
Eucgr.K02879 Eucalyptus grandis HOM05D003535 ORTHO05D003986 6.3e-22 109.0 295 34.2
Prupe.3G278600 Prunus persica HOM05D003535 ORTHO05D003986 6.3e-22 109.0 298 35.2
BcaB05g24535 Brassica carinata HOM05D003535 ORTHO05D003986 8.2e-22 108.6 209 41.1
Lju41A30T60 Lonicera japonica HOM05D003535 ORTHO05D003986 4.1e-21 106.3 292 35.6
Sed0009689 Sechium edule HOM05D003535 ORTHO05D003986 1.7e-19 100.9 291 32.3
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.8e-19 99.8 306 33.0
MD17G1040400 Malus domestica HOM05D003535 ORTHO05D003986 5.5e-18 95.9 299 33.1
Sc20g0002750 Simmondsia chinensis HOM05D003535 ORTHO05D003986 3.6e-17 93.2 299 31.1
CSS0038696 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 1.8e-16 90.9 290 33.1
RcHm_v2.0_Chr2g0170341 Rosa chinensis HOM05D003535 ORTHO05D003986 3.9e-16 89.7 299 30.8
Cfa007471 Carpinus fangiana HOM05D003535 ORTHO05D003986 6.7e-16 89.0 301 32.2
Haze_14626 Corylus avellana HOM05D003535 ORTHO05D003986 1.1e-15 88.2 301 32.9
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.5e-15 87.8 290 32.8
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.5e-15 87.8 290 32.8
FvH4_6g50070 Fragaria vesca HOM05D003535 ORTHO05D003986 2.0e-15 87.4 297 30.0
CsaV3_5G037470 Cucumis sativus L. HOM05D003535 ORTHO05D003986 4.4e-15 86.3 296 30.4
MELO3C021511.2 Cucumis melo HOM05D003535 ORTHO05D003986 9.7e-15 85.1 309 28.8
Zm00001eb424450 Zea mays HOM05D003535 ORTHO05D003986 4.8e-14 82.8 116 49.1
Cc07_g02620 Coffea canephora HOM05D003535 ORTHO05D003986 9.1e-13 78.6 290 29.3
Ciclev10012366m.g Citrus clementina HOM05D003535 ORTHO05D003986 1.6e-12 77.8 300 30.3
SalBow2G2528 Salvia bowleyana HOM05D001943 ORTHO05D001969 1.6e-12 77.8 80 56.2
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.0e-12 77.4 302 28.1
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.0e-12 77.4 302 28.1
Nitab4.5_0001952g0220 Nicotiana tabacum HOM05D003535 ORTHO05D003986 7.7e-12 75.5 296 28.7
Nitab4.5_0007185g0090 Nicotiana tabacum HOM05D003535 ORTHO05D003986 7.7e-12 75.5 292 28.1
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.3e-11 74.7 300 28.3
QL02p078163 Quercus lobata HOM05D003535 ORTHO05D003986 1.3e-11 74.7 293 31.1
QL93p0205_0149 Quercus lobata HOM05D003535 ORTHO05D003986 1.3e-11 74.7 293 31.1
Sc11g0001420 Simmondsia chinensis HOM05D003535 ORTHO05D003986 1.1e-10 71.6 123 38.2
CAN.G206.59 Capsicum annuum HOM05D003535 ORTHO05D003986 1.9e-10 70.9 294 27.9
SEGI_38155 Sequoiadendron giganteum HOM05D003535 ORTHO05D003986 2.5e-10 70.5 126 44.4
CiPaw.04G022500 Carya illinoinensis HOM05D003535 ORTHO05D003986 7.2e-10 68.9 291 29.9
Hma1.2p1_0697F.1_g205050 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 7.2e-10 68.9 126 41.3
Sopen02g031960 Solanum pennellii HOM05D003535 ORTHO05D003986 2.3e-08 63.9 294 27.9
MSTRG.23982 Avicennia marina HOM05D003535 ORTHO05D003986 2.6e-07 60.5 306 28.4
Zm00001eb080440 Zea mays HOM05D003535 ORTHO05D003986 3.3e-07 60.1 211 27.0
EL10Ac7g18005 Beta vulgaris HOM05D003535 ORTHO05D003986 5.7e-07 59.3 288 30.2
Solyc02g087220.4 Solanum lycopersicum HOM05D003535 ORTHO05D003986 6.3e-06 55.8 189 31.2
HPP92_026429 Vanilla planifolia HOM05D001250 ORTHO05D000627 6.3e-06 55.8 67 50.7
Migut.H00157 Erythranthe guttata HOM05D013849 ORTHO05D003986 8.2e-06 55.5 291 26.5


User provided reference genes

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