Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 9.3e-259 896.3 452 100.0
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.8e-225 785.8 435 90.8
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.6e-208 728.8 435 85.1
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.7e-207 726.1 447 83.2
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.7e-205 718.8 437 81.7
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 7.8e-205 717.2 435 83.7
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 8.6e-204 713.8 435 83.7
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 5.2e-201 704.5 437 80.8
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 8.9e-201 703.7 438 80.8
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.0e-200 702.6 445 79.8
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 2.6e-200 702.2 445 80.4
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 9.8e-200 700.3 438 82.6
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 2.9e-199 698.7 471 78.1
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 8.3e-199 697.2 439 79.7
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 4.1e-198 694.9 425 84.5
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 6.0e-197 691.0 439 80.4
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 6.0e-197 691.0 439 80.4
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 6.0e-197 691.0 439 78.6
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 6.0e-197 691.0 437 79.4
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.3e-196 689.9 438 79.7
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.0e-196 688.7 439 80.4
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 1.9e-195 686.0 438 80.8
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.9e-195 686.0 437 80.1
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.1e-194 682.6 448 75.9
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.4e-193 679.9 437 80.8
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 3.1e-193 678.7 435 77.7
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 5.2e-193 677.9 433 79.2
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 8.9e-193 677.2 435 79.1
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.2e-191 672.5 438 79.0
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 7.0e-190 667.5 515 67.8
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 2.0e-189 666.0 453 75.1
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 3.5e-189 665.2 445 75.5
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 3.5e-189 665.2 437 77.8
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.6e-189 664.8 440 76.1
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.3e-188 663.3 436 78.0
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.3e-188 662.5 440 76.1
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.3e-187 657.5 440 75.9
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 7.3e-187 657.5 445 76.6
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.6e-186 656.4 445 76.6
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 2.8e-186 655.6 440 75.9
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 6.2e-186 654.4 438 76.5
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 8.1e-186 654.1 435 75.6
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 8.1e-186 654.1 437 76.4
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.4e-185 653.3 435 75.4
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.4e-185 653.3 440 75.7
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.4e-185 653.3 444 75.2
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.8e-185 652.9 437 76.9
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 6.8e-185 651.0 435 76.1
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.0e-184 649.4 436 75.9
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 3.4e-184 648.7 437 75.5
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 4.4e-184 648.3 447 74.5
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.7e-183 646.4 441 74.6
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.7e-183 646.4 438 75.3
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 4.9e-183 644.8 437 76.0
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 2.4e-182 642.5 435 73.3
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 3.2e-182 642.1 437 76.4
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 5.4e-182 641.3 426 76.8
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 5.4e-182 641.3 439 77.4
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 1.6e-181 639.8 435 74.3
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.7e-181 639.0 435 73.8
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.7e-181 639.0 437 77.1
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.0e-180 637.1 435 73.6
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.3e-180 636.7 436 75.0
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.0e-180 635.6 436 74.8
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 3.9e-180 635.2 439 74.7
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 6.6e-180 634.4 447 72.0
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.1e-179 633.6 459 73.6
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.9e-179 632.9 439 73.8
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.3e-179 632.1 456 71.9
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 1.6e-178 629.8 436 74.1
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 6.2e-178 627.9 437 74.6
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 6.2e-178 627.9 436 73.2
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 8.1e-178 627.5 436 73.4
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 8.9e-177 624.0 436 73.2
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.2e-176 623.6 460 73.3
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 5.8e-176 621.3 439 72.2
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.6e-176 620.9 436 73.9
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 9.9e-176 620.5 469 70.1
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 9.9e-176 620.5 441 73.9
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 9.9e-176 620.5 409 75.6
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 1.3e-175 620.2 439 72.0
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.7e-175 619.8 439 72.0
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.9e-175 619.0 436 73.6
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 2.9e-175 619.0 456 73.5
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 2.9e-175 619.0 435 73.1
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 3.8e-175 618.6 439 71.8
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 4.9e-175 618.2 439 72.0
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 6.4e-175 617.8 439 71.5
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 6.4e-175 617.8 437 74.4
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.4e-174 616.7 439 74.0
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.2e-174 615.5 441 72.1
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.2e-174 615.5 439 72.0
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 7.1e-174 614.4 438 73.3
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 9.2e-174 614.0 440 71.8
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 9.2e-174 614.0 439 73.6
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.7e-173 612.5 435 71.0
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 7.8e-173 610.9 440 73.9
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.9e-171 606.3 440 73.0
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.5e-171 605.9 444 70.7
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.5e-171 605.9 444 70.7
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 2.5e-171 605.9 436 72.5
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 3.3e-171 605.5 444 70.5
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 9.6e-171 604.0 436 72.2
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 8.1e-170 600.9 437 69.8
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.4e-169 600.1 523 61.6
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.1e-169 599.0 442 72.9
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.1e-169 599.0 440 72.3
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 3.1e-169 599.0 446 70.4
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 2.0e-168 596.3 419 74.5
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 7.6e-168 594.3 442 71.0
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 2.2e-167 592.8 442 70.4
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 3.8e-167 592.0 443 70.7
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 2.4e-166 589.3 444 70.0
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 3.5e-165 585.5 444 69.6
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 6.6e-164 581.3 441 70.1
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 1.6e-162 576.6 437 70.0
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 6.2e-162 574.7 440 69.8
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 4.5e-160 568.5 434 69.6
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.0e-157 558.1 425 65.4
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 7.9e-157 557.8 427 67.9
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 8.7e-156 554.3 406 72.4
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.4e-153 546.2 432 67.6
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 3.1e-153 545.8 451 64.7
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 3.0e-148 529.3 445 62.9
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 3.9e-148 528.9 451 63.6
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.5e-144 516.9 415 67.2
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.2e-138 496.5 428 59.1
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 2.8e-138 496.1 497 58.6
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 1.2e-136 490.7 457 60.2
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.2e-134 482.6 388 65.7
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 3.1e-129 466.1 287 82.6
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.1e-125 453.4 304 75.3
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 5.1e-124 448.7 457 54.3
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.3e-119 434.1 453 53.4
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 2.1e-117 426.8 332 67.5
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 4.1e-113 412.5 451 51.9
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.8e-108 397.1 452 50.9
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.4e-107 392.5 249 79.9
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.8e-98 362.5 318 63.5
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.7e-96 356.7 315 64.1
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 6.1e-85 318.9 193 82.4
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 4.6e-80 302.8 471 42.5
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.7e-79 300.8 271 60.9
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 4.3e-78 296.2 238 66.0
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.2e-77 294.7 196 74.5
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.8e-77 293.5 512 40.0
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.4e-76 291.2 195 75.4
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.3e-76 290.4 189 77.2
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 4.0e-76 289.7 328 52.4
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 8.3e-74 282.0 217 67.3
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 3.3e-70 270.0 184 75.0
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.3e-66 258.1 243 59.7
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 9.5e-62 241.9 158 81.0
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.7e-55 221.1 128 81.2
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 5.6e-54 216.1 206 55.8
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.0e-51 207.6 170 62.4
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.9e-50 203.0 277 44.4
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 3.2e-49 200.3 120 82.5
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.7e-48 197.2 130 73.8
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.0e-48 196.1 153 63.4
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 6.4e-42 176.0 321 36.1
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 3.2e-41 173.7 491 31.4
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 2.8e-37 160.6 293 36.5
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.5e-33 147.5 154 54.5
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 3.5e-32 143.7 101 69.3
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 2.1e-29 134.4 154 53.2
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.1e-28 132.1 127 61.4
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 9.0e-28 129.0 87 71.3
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.7e-26 124.8 79 83.5
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 6.1e-24 116.3 126 54.8
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.3e-23 115.2 126 56.3
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 1.1e-20 105.5 119 56.3
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 2.6e-19 100.9 74 70.3
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 6.1e-16 89.7 52 88.5
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.1e-12 79.0 46 89.1
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 2.6e-11 74.3 56 67.9
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 5.9e-11 73.2 51 70.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.9e-10 70.9 63 57.1
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 5.0e-10 70.1 112 42.9
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.1e-08 64.7 55 63.6
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 2.1e-08 64.7 76 53.9
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 1.5e-06 58.5 36 69.4
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 9.7e-06 55.8 156 30.1


User provided reference genes

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