Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 6.3e-49 197.2 106 100.0
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 5.4e-32 141.0 95 78.9
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 2.9e-25 118.6 110 66.4
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 7.8e-23 110.5 97 60.8
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 1.0e-22 110.2 88 67.0
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 1.7e-22 109.4 96 65.6
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 5.0e-22 107.8 93 65.6
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 1.3e-17 93.2 80 63.8
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 8.3e-17 90.5 113 50.4
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.1e-16 90.1 97 58.8
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 2.4e-16 89.0 87 58.6
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 2.4e-16 89.0 95 55.8
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 4.1e-16 88.2 91 58.2
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 9.2e-16 87.0 91 56.0
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 2.1e-15 85.9 104 50.0
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.1e-15 85.9 108 50.9
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 2.7e-15 85.5 102 52.0
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 2.7e-15 85.5 108 50.9
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 3.5e-15 85.1 99 59.6
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 1.7e-14 82.8 72 56.9
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 2.3e-14 82.4 72 56.9
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 3.9e-14 81.6 114 44.7
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 3.9e-14 81.6 106 49.1
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 5.1e-14 81.3 108 52.8
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 8.6e-14 80.5 111 46.8
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 1.5e-13 79.7 87 55.2
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 1.9e-13 79.3 90 52.2
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 1.9e-13 79.3 72 55.6
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.5e-13 79.0 72 58.3
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 9.5e-13 77.0 109 48.6
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 1.2e-12 76.6 72 56.9
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.6e-12 76.3 86 64.0
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 2.1e-12 75.9 92 45.7
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 2.8e-12 75.5 103 53.4
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 3.6e-12 75.1 88 50.0
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 3.6e-12 75.1 84 53.6
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 6.2e-12 74.3 85 60.0
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 6.2e-12 74.3 69 68.1
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.1e-11 73.6 84 56.0
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 1.4e-11 73.2 52 71.2
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 3.1e-11 72.0 105 44.8
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 3.1e-11 72.0 107 43.9
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 6.8e-11 70.9 99 45.5
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 8.9e-11 70.5 85 49.4
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.5e-10 69.7 84 58.3
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.5e-10 69.7 84 58.3
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.5e-10 69.7 84 58.3
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 1.5e-10 69.7 73 54.8
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 1.5e-10 69.7 94 46.8
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 2.6e-10 68.9 71 54.9
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 2.6e-10 68.9 95 47.4
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 2.6e-10 68.9 66 54.5
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 4.4e-10 68.2 99 47.5
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 7.6e-10 67.4 108 42.6
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 1.3e-09 66.6 84 46.4
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.7e-09 66.2 55 69.1
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 2.2e-09 65.9 108 50.0
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.2e-09 65.9 43 76.7
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 2.2e-09 65.9 89 44.9
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 2.2e-09 65.9 51 62.7
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 2.9e-09 65.5 85 48.2
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 2.9e-09 65.5 87 46.0
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 4.9e-09 64.7 85 56.5
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 8.4e-09 63.9 86 54.7
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.1e-08 63.5 44 72.7
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 1.1e-08 63.5 82 47.6
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.1e-08 63.5 50 62.0
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.1e-08 63.5 105 41.9
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 1.1e-08 63.5 73 53.4
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 2.4e-08 62.4 101 49.5
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 2.4e-08 62.4 106 42.5
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 2.4e-08 62.4 106 42.5
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 2.4e-08 62.4 106 42.5
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 2.4e-08 62.4 82 46.3
Oeu006910.1 Olea europaea HOM05D007325 ORTHO05D009251 2.4e-08 62.4 86 45.3
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 4.1e-08 61.6 104 48.1
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 5.4e-08 61.2 74 58.1
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 5.4e-08 61.2 62 58.1
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 9.2e-08 60.5 85 54.1
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 1.2e-07 60.1 52 59.6
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-07 60.1 44 68.2
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 1.6e-07 59.7 85 52.9
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 1.6e-07 59.7 85 52.9
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 1.6e-07 59.7 85 52.9
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 2.1e-07 59.3 102 49.0
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 4.6e-07 58.2 108 45.4
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 4.6e-07 58.2 87 44.8
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 6.0e-07 57.8 91 50.5
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 6.0e-07 57.8 84 47.6
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 7.8e-07 57.4 70 51.4
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 7.8e-07 57.4 91 45.1
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.7e-06 56.2 44 63.6
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 2.3e-06 55.8 66 57.6
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 3.9e-06 55.1 84 54.8
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 5.1e-06 54.7 85 42.4
Sed0022272 Sechium edule HOM05D007325 ORTHO05D009251 6.6e-06 54.3 72 43.1
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 8.6e-06 53.9 68 57.4


User provided reference genes

Program Settings