Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30941 Davidia involucrata HOM05D003412 ORTHO05D003962 5.9e-47 190.7 105 100.0
Manes.09G180600 Manihot esculenta HOM05D003412 ORTHO05D003962 8.5e-30 133.7 89 83.1
Hma1.2p1_0052F.1_g030415 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 1.1e-29 133.3 89 83.1
Dinv24506 Davidia involucrata HOM05D003412 ORTHO05D003962 2.5e-29 132.1 94 83.0
Ciclev10012076m.g Citrus clementina HOM05D003412 ORTHO05D003962 9.4e-29 130.2 89 79.8
Actinidia01664 Actinidia chinensis HOM05D003412 ORTHO05D003962 2.7e-28 128.6 93 79.6
Manes.08G107900 Manihot esculenta HOM05D003412 ORTHO05D003962 3.6e-28 128.3 89 80.9
Rhsim05G0121800 Rhododendron simsii HOM05D003412 ORTHO05D003962 4.7e-28 127.9 85 82.4
Hma1.2p1_3304F.1_g335080 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 8.0e-28 127.1 92 80.4
TWI56G0029 Tripterygium wilfordii HOM05D003412 ORTHO05D003962 1.8e-27 125.9 92 76.1
DCAR_029287 Daucus carota HOM05D003412 ORTHO05D003962 4.0e-27 124.8 87 77.0
CANSAT54G2189 Cannabis sativa HOM05D003412 ORTHO05D003962 8.8e-27 123.6 89 77.5
vmacro19768 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 1.1e-26 123.2 105 69.5
Actinidia16911 Actinidia chinensis HOM05D003412 ORTHO05D003962 1.5e-26 122.9 90 75.6
Nn4g25397 Nelumbo nucifera HOM05D003412 ORTHO05D003962 1.5e-26 122.9 89 75.3
Cpa.g.sc48.220 Carica papaya HOM05D003412 ORTHO05D003962 2.6e-26 122.1 89 78.7
Gorai.013G131200 Gossypium raimondii HOM05D003412 ORTHO05D003962 2.6e-26 122.1 89 78.7
Oeu036644.1 Olea europaea HOM05D003412 ORTHO05D003962 2.6e-26 122.1 90 75.6
Eucgr.H01317 Eucalyptus grandis HOM05D003412 ORTHO05D003962 3.3e-26 121.7 83 80.7
PGR031G1608 Punica granatum HOM05D003412 ORTHO05D003962 3.3e-26 121.7 85 80.0
Thecc.05G329000 Theobroma cacao HOM05D003412 ORTHO05D003962 3.3e-26 121.7 85 80.0
QL03p010471 Quercus lobata HOM05D003412 ORTHO05D003962 5.7e-26 120.9 87 78.2
Gohir.D13G116700 Gossypium hirsutum HOM05D003412 ORTHO05D003962 7.5e-26 120.6 89 77.5
CiPaw.07G035400 Carya illinoinensis HOM05D003412 ORTHO05D003962 9.7e-26 120.2 89 75.3
CSS0037128 Camellia sinensis var. sinensis HOM05D003412 ORTHO05D003962 1.3e-25 119.8 86 79.1
TAR636G2549 Trochodendron aralioides HOM05D003412 ORTHO05D003962 1.7e-25 119.4 93 73.1
PGSC0003DMG400018247 Solanum tuberosum HOM05D003412 ORTHO05D003962 2.2e-25 119.0 94 73.4
TAR362G0077 Trochodendron aralioides HOM05D003412 ORTHO05D003962 2.8e-25 118.6 89 74.2
Aqoxy2G02528 Aquilegia oxysepala HOM05D003412 ORTHO05D003962 3.7e-25 118.2 87 75.9
Lalb_Chr21g0310081 Lupinus albus HOM05D003412 ORTHO05D003962 3.7e-25 118.2 89 73.0
MBI19_g32732_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 3.7e-25 118.2 89 75.3
Nitab4.5_0014791g0020 Nicotiana tabacum HOM05D003412 ORTHO05D003962 4.8e-25 117.9 88 72.7
Potri.013G003400 Populus trichocarpa HOM05D003412 ORTHO05D003962 4.8e-25 117.9 90 73.3
Sopen01g044580 Solanum pennellii HOM05D003412 ORTHO05D003962 6.3e-25 117.5 83 78.3
COL.COLO4_05512 Corchorus olitorius HOM05D003412 ORTHO05D003962 8.2e-25 117.1 89 74.2
DCAR_025305 Daucus carota HOM05D003412 ORTHO05D003962 8.2e-25 117.1 85 74.1
QL03p010236 Quercus lobata HOM05D003412 ORTHO05D003962 8.2e-25 117.1 91 75.8
Migut.N00969 Erythranthe guttata HOM05D003412 ORTHO05D003962 1.1e-24 116.7 85 75.3
arahy.Tifrunner.gnm1.ann1.LCTE14 Arachis hypogaea HOM05D003412 ORTHO05D003962 1.4e-24 116.3 85 76.5
MSTRG.16423 Avicennia marina HOM05D003412 ORTHO05D003962 1.4e-24 116.3 85 78.8
Haze_03996 Corylus avellana HOM05D003412 ORTHO05D003962 1.4e-24 116.3 95 72.6
Solyc01g101130.3 Solanum lycopersicum HOM05D003412 ORTHO05D003962 1.4e-24 116.3 83 77.1
Duzib177G0752 Durio zibethinus HOM05D003412 ORTHO05D003962 1.8e-24 115.9 85 75.3
arahy.Tifrunner.gnm1.ann1.WSUD3I Arachis hypogaea HOM05D003412 ORTHO05D003962 2.4e-24 115.5 85 75.3
Sabra05G0000900 Salix brachista HOM05D003412 ORTHO05D003962 3.1e-24 115.2 85 75.3
Nitab4.5_0001931g0010 Nicotiana tabacum HOM05D003412 ORTHO05D003962 4.1e-24 114.8 83 73.5
RcHm_v2.0_Chr3g0458381 Rosa chinensis HOM05D003412 ORTHO05D003962 4.1e-24 114.8 89 71.9
TAR365G0256 Trochodendron aralioides HOM05D003412 ORTHO05D003962 4.1e-24 114.8 99 68.7
CiPaw.08G150800 Carya illinoinensis HOM05D003412 ORTHO05D003962 5.3e-24 114.4 84 76.2
MELO3C004154.2 Cucumis melo HOM05D003412 ORTHO05D003962 5.3e-24 114.4 88 72.7
Ah.06g190650 Amaranthus hybridus HOM05D003412 ORTHO05D003962 7.0e-24 114.0 89 71.9
Glyma.10G144000 Glycine max HOM05D003412 ORTHO05D003962 7.0e-24 114.0 89 70.8
Lalb_Chr06g0167331 Lupinus albus HOM05D003412 ORTHO05D003962 7.0e-24 114.0 89 69.7
MSTRG.5167 Avicennia marina HOM05D003412 ORTHO05D003962 9.1e-24 113.6 85 74.1
Ca_10195_v3 Cicer arietinum L. HOM05D003412 ORTHO05D003962 9.1e-24 113.6 89 70.8
Aa31LG5G16210 Aethionema arabicum HOM05D003412 ORTHO05D003962 1.2e-23 113.2 91 69.2
MSTRG.27914 Avicennia marina HOM05D003412 ORTHO05D003962 1.6e-23 112.8 80 77.5
Medtr1g484830 Medicago truncatula HOM05D003412 ORTHO05D003962 1.6e-23 112.8 92 70.7
Glyma.20G092900 Glycine max HOM05D003412 ORTHO05D003962 2.0e-23 112.5 89 70.8
TAR365G0905 Trochodendron aralioides HOM05D003412 ORTHO05D003962 2.0e-23 112.5 99 67.7
ClCG02G014670 Citrullus lanatus HOM05D003412 ORTHO05D003962 2.7e-23 112.1 84 75.0
Potri.005G003600 Populus trichocarpa HOM05D003412 ORTHO05D003962 2.7e-23 112.1 85 74.1
Sabra13G0002900 Salix brachista HOM05D003412 ORTHO05D003962 2.7e-23 112.1 90 73.3
VMungo0720G0630 Vigna mungo HOM05D003412 ORTHO05D003962 2.7e-23 112.1 89 70.8
FAN05G5683 Fragaria x ananassa HOM05D003412 ORTHO05D003962 3.5e-23 111.7 92 70.7
Prupe.6G305600 Prunus persica HOM05D003412 ORTHO05D003962 3.5e-23 111.7 89 69.7
vmacro01603 Vaccinium macrocarpon HOM05D003412 ORTHO05D003962 3.5e-23 111.7 92 69.6
FAN09G0161 Fragaria x ananassa HOM05D003412 ORTHO05D003962 5.9e-23 110.9 91 71.4
FAN14G3569 Fragaria x ananassa HOM05D003412 ORTHO05D003962 5.9e-23 110.9 91 71.4
Sc16g0009380 Simmondsia chinensis HOM05D003412 ORTHO05D003962 5.9e-23 110.9 84 71.4
TPR.G2623 Trifolium pratense HOM05D003412 ORTHO05D003962 1.0e-22 110.2 89 68.5
Duzib128G1566 Durio zibethinus HOM05D003412 ORTHO05D003962 1.7e-22 109.4 88 70.5
Rhsim11G0101900 Rhododendron simsii HOM05D003412 ORTHO05D003962 1.7e-22 109.4 99 65.7
Lj5g0005042 Lotus japonicus HOM05D003412 ORTHO05D003962 2.2e-22 109.0 89 67.4
MD04G1187100 Malus domestica HOM05D003412 ORTHO05D003962 2.2e-22 109.0 88 68.2
PSO210G2054 Papaver somniferum HOM05D003412 ORTHO05D003962 2.2e-22 109.0 87 67.8
PGR083G2508 Punica granatum HOM05D003412 ORTHO05D003962 2.9e-22 108.6 90 68.9
Sabra05G0015000 Salix brachista HOM05D003412 ORTHO05D003962 3.8e-22 108.2 97 67.0
BcaC05g29778 Brassica carinata HOM05D003412 ORTHO05D003962 5.0e-22 107.8 91 68.1
AUR62006809 Chenopodium quinoa HOM05D003412 ORTHO05D003962 6.5e-22 107.5 99 65.7
PSO761G0645 Papaver somniferum HOM05D003412 ORTHO05D003962 6.5e-22 107.5 87 66.7
BcaC05g30086 Brassica carinata HOM05D003412 ORTHO05D003962 8.5e-22 107.1 91 68.1
C05p61450 Brassica napus HOM05D003412 ORTHO05D003962 8.5e-22 107.1 91 68.1
BolC5t34803H Brassica oleracea HOM05D003412 ORTHO05D003962 8.5e-22 107.1 91 68.1
Sp3g04690 Schrenkiella parvula HOM05D003412 ORTHO05D003962 8.5e-22 107.1 91 67.0
AT3G05830 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 1.5e-21 106.3 91 65.9
CARHR080290 Cardamine hirsuta HOM05D003412 ORTHO05D003962 1.5e-21 106.3 91 67.0
arahy.Tifrunner.gnm1.ann1.7ZMX5M Arachis hypogaea HOM05D003412 ORTHO05D003962 1.9e-21 105.9 76 76.3
Lsat_1_v5_gn_9_77100 Lactuca sativa HOM05D003412 ORTHO05D003962 1.9e-21 105.9 87 66.7
A05p42230 Brassica napus HOM05D003412 ORTHO05D003962 3.2e-21 105.1 92 65.2
BraA05t22941Z Brassica rapa HOM05D003412 ORTHO05D003962 3.2e-21 105.1 92 65.2
Carub.0003s0519 Capsella rubella HOM05D003412 ORTHO05D003962 3.2e-21 105.1 91 65.9
THA.LOC104818749 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 5.5e-21 104.4 91 65.9
Nn3g21904 Nelumbo nucifera HOM05D003412 ORTHO05D003962 7.2e-21 104.0 89 64.0
THA.LOC104821745 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 7.2e-21 104.0 91 64.8
CsaV3_2G007300 Cucumis sativus L. HOM05D003412 ORTHO05D003962 9.4e-21 103.6 106 61.3
arahy.Tifrunner.gnm1.ann1.US2PL9 Arachis hypogaea HOM05D003412 ORTHO05D003962 1.6e-20 102.8 77 74.0
AL3G16570 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 2.1e-20 102.4 91 63.7
ECA236G3082 Erigeron canadensis HOM05D003412 ORTHO05D003962 2.1e-20 102.4 84 66.7
Thhalv10021934m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 2.1e-20 102.4 91 63.7
Sed0023403 Sechium edule HOM05D003412 ORTHO05D003962 2.1e-20 102.4 84 69.0
arahy.Tifrunner.gnm1.ann1.36CNLM Arachis hypogaea HOM05D003412 ORTHO05D003962 2.7e-20 102.1 88 65.9
arahy.Tifrunner.gnm1.ann1.D23GS1 Arachis hypogaea HOM05D003412 ORTHO05D003962 2.7e-20 102.1 88 65.9
Carub.0006s2442 Capsella rubella HOM05D003412 ORTHO05D003962 2.7e-20 102.1 83 67.5
A09p05660 Brassica napus HOM05D003412 ORTHO05D003962 4.7e-20 101.3 83 66.3
BraA09t36208Z Brassica rapa HOM05D003412 ORTHO05D003962 4.7e-20 101.3 83 66.3
Psat6g155400 Pisum sativum HOM05D003412 ORTHO05D003962 4.7e-20 101.3 89 62.9
SalBow1G0001 Salvia bowleyana HOM05D003412 ORTHO05D003962 4.7e-20 101.3 85 69.4
PGR119G1398 Punica granatum HOM05D003412 ORTHO05D003962 6.1e-20 100.9 90 65.6
HPP92_026058 Vanilla planifolia HOM05D003412 ORTHO05D003962 8.0e-20 100.5 89 64.0
Os05g0135900 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 1.0e-19 100.1 89 61.8
ATR0796G311 Amborella trichopoda HOM05D003412 ORTHO05D003962 1.4e-19 99.8 84 69.0
BcaB04g19713 Brassica carinata HOM05D003412 ORTHO05D003962 1.4e-19 99.8 83 65.1
THA.LOC104816843 Tarenaya hassleriana HOM05D003412 ORTHO05D003962 1.4e-19 99.8 89 61.8
CDE02G2375 Ceratophyllum demersum HOM05D000427 ORTHO05D000386 2.3e-19 99.0 95 58.9
BcaNung03912 Brassica carinata HOM05D003412 ORTHO05D003962 4.0e-19 98.2 82 63.4
A06p37010 Brassica napus HOM05D003412 ORTHO05D003962 4.0e-19 98.2 82 63.4
BraA06t26626Z Brassica rapa HOM05D003412 ORTHO05D003962 4.0e-19 98.2 82 63.4
Migut.B00877 Erythranthe guttata HOM05D003412 ORTHO05D003962 4.0e-19 98.2 74 74.3
Thhalv10004552m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 4.0e-19 98.2 83 65.1
MD12G1200500 Malus domestica HOM05D003412 ORTHO05D003962 4.0e-19 98.2 89 64.0
BcaNung03675 Brassica carinata HOM05D003412 ORTHO05D003962 6.8e-19 97.4 82 62.2
C07p41480 Brassica napus HOM05D003412 ORTHO05D003962 6.8e-19 97.4 82 62.2
BolC7t44681H Brassica oleracea HOM05D003412 ORTHO05D003962 6.8e-19 97.4 82 62.2
GSVIVG01028212001 Vitis vinifera HOM05D003412 ORTHO05D003962 6.8e-19 97.4 83 65.1
CDE08G0751 Ceratophyllum demersum HOM05D003412 ORTHO05D003962 1.2e-18 96.7 92 60.9
AT5G26770 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 1.5e-18 96.3 83 63.9
Zm00001eb354610 Zea mays HOM05D003412 ORTHO05D003962 1.5e-18 96.3 87 58.6
AL6G38640 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 2.0e-18 95.9 83 62.7
Aa31LG11G9870 Aethionema arabicum HOM05D003412 ORTHO05D003962 2.6e-18 95.5 83 62.7
Zm00001eb417390 Zea mays HOM05D003412 ORTHO05D003962 2.6e-18 95.5 87 59.8
Aa31LG1G5630 Aethionema arabicum HOM05D003412 ORTHO05D003962 4.4e-18 94.7 89 59.6
BcaC04g23636 Brassica carinata HOM05D003412 ORTHO05D003962 4.4e-18 94.7 72 68.1
Sp2g21210 Schrenkiella parvula HOM05D003412 ORTHO05D003962 4.4e-18 94.7 83 63.9
Hma1.2p1_3841F.1_g337660 Hydrangea macrophylla HOM05D003412 ORTHO05D003962 7.5e-18 94.0 90 63.3
Eucgr.B01817 Eucalyptus grandis HOM05D003412 ORTHO05D003962 9.8e-18 93.6 88 56.8
Carub.0001s0882 Capsella rubella HOM05D003412 ORTHO05D003962 1.3e-17 93.2 89 59.6
Oeu029183.1 Olea europaea HOM05D003412 ORTHO05D003962 1.7e-17 92.8 87 63.2
PSO357G0133 Papaver somniferum HOM05D003412 ORTHO05D003962 2.2e-17 92.4 85 62.4
CARHR009430 Cardamine hirsuta HOM05D003412 ORTHO05D003962 2.8e-17 92.0 89 58.4
CARHR186800 Cardamine hirsuta HOM05D003412 ORTHO05D003962 2.8e-17 92.0 83 62.7
Lalb_Chr04g0260311 Lupinus albus HOM05D003412 ORTHO05D003962 6.3e-17 90.9 87 56.3
GSVIVG01031318001 Vitis vinifera HOM05D003412 ORTHO05D003962 6.3e-17 90.9 77 68.8
Thhalv10008143m.g Eutrema salsugineum HOM05D003412 ORTHO05D003962 1.1e-16 90.1 89 56.2
Sp1g08080 Schrenkiella parvula HOM05D003412 ORTHO05D003962 7.0e-16 87.4 89 56.2
EL10Ac4g09549 Beta vulgaris HOM05D003412 ORTHO05D003962 1.6e-15 86.3 85 62.4
BolC5t29502H Brassica oleracea HOM05D003412 ORTHO05D003962 2.7e-15 85.5 90 55.6
unitig_22.g5801 Utricularia gibba HOM05D003412 ORTHO05D003962 2.7e-15 85.5 94 59.6
A06p06180 Brassica napus HOM05D003412 ORTHO05D003962 3.5e-15 85.1 90 55.6
C05p07470 Brassica napus HOM05D003412 ORTHO05D003962 3.5e-15 85.1 90 55.6
HanXRQChr03g0088701 Helianthus annuus HOM05D003412 ORTHO05D003962 2.2e-14 82.4 55 80.0
Lj5A319T47 Lonicera japonica HOM05D003412 ORTHO05D003962 6.5e-14 80.9 89 58.4
unitig_26.g8997 Utricularia gibba HOM05D003412 ORTHO05D003962 8.5e-14 80.5 83 55.4
BraA06t23830Z Brassica rapa HOM05D003412 ORTHO05D003962 3.2e-13 78.6 96 52.1
SEGI_01307 Sequoiadendron giganteum HOM05D003412 ORTHO05D003962 3.2e-13 78.6 83 54.2
SEGI_23842 Sequoiadendron giganteum HOM05D003412 ORTHO05D003962 3.2e-13 78.6 83 54.2
AUR62000468 Chenopodium quinoa HOM05D003412 ORTHO05D003962 5.5e-13 77.8 89 56.2
MBI18_g09639_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 5.5e-13 77.8 89 51.7
Hund07277 Selenicereus undatus HOM05D003412 ORTHO05D003962 6.1e-12 74.3 89 52.8
Zm00001eb129850 Zea mays HOM05D003412 ORTHO05D003962 8.0e-12 73.9 84 47.6
Hund07273 Selenicereus undatus HOM05D003412 ORTHO05D003962 1.8e-11 72.8 89 51.7
AL1G19990 Arabidopsis lyrata HOM05D003412 ORTHO05D003962 3.0e-11 72.0 54 72.2
AT1G09470 Arabidopsis thaliana HOM05D003412 ORTHO05D003962 3.0e-11 72.0 54 72.2
BcaC09g50034 Brassica carinata HOM05D003412 ORTHO05D003962 3.0e-11 72.0 79 53.2
Sabra17G0096700 Salix brachista HOM05D003412 ORTHO05D003962 5.2e-11 71.2 53 73.6
arahy.Tifrunner.gnm1.ann1.B9BAGZ Arachis hypogaea HOM05D003412 ORTHO05D003962 8.8e-11 70.5 55 65.5
BolC4t26374H Brassica oleracea HOM05D003412 ORTHO05D003962 8.8e-11 70.5 68 57.4
Oeu061921.1 Olea europaea HOM05D003412 ORTHO05D003962 2.0e-10 69.3 86 51.2
SGA_v2.0_scaffold279G46784 Striga asiatica HOM05D003412 ORTHO05D003962 3.4e-10 68.6 87 49.4
Os01g0292700 Oryza sativa ssp. japonica HOM05D003412 ORTHO05D003962 4.4e-10 68.2 85 47.1
C09p06270 Brassica napus HOM05D003412 ORTHO05D003962 1.7e-09 66.2 83 51.8
BcaB01g00664 Brassica carinata HOM05D003412 ORTHO05D014430 1.8e-08 62.8 54 59.3
arahy.Tifrunner.gnm1.ann1.4B7523 Arachis hypogaea HOM05D003412 ORTHO05D003962 3.1e-08 62.0 95 47.4
Lj9C230G11 Lonicera japonica HOM05D003412 ORTHO05D003962 1.3e-06 56.6 85 47.1
BolC4t26373H Brassica oleracea HOM05D003412 ORTHO05D003962 8.6e-06 53.9 62 53.2


User provided reference genes

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