Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 4.9e-218 760.8 364 100.0
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 2.3e-199 698.7 364 89.8
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.1e-183 644.4 361 83.4
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 9.7e-182 640.2 359 81.6
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.5e-179 632.9 352 81.5
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 4.2e-177 624.8 360 80.3
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.8e-175 619.4 358 80.2
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 4.5e-171 604.7 366 77.9
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 5.9e-171 604.4 362 76.2
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 7.2e-169 597.4 362 74.3
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 4.7e-168 594.7 361 75.1
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 3.0e-167 592.0 362 74.0
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.2e-167 591.3 364 73.6
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.2e-166 590.1 362 76.2
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.2e-166 590.1 359 72.4
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.6e-166 589.0 364 74.7
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.6e-166 589.0 364 74.7
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.3e-166 588.6 364 73.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 9.7e-166 587.0 356 74.2
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 9.7e-166 587.0 364 73.6
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.7e-166 587.0 359 73.5
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.8e-165 585.5 343 77.0
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.2e-165 583.9 343 74.9
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 8.2e-165 583.9 343 76.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.4e-164 583.2 359 74.9
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 2.4e-164 582.4 364 73.6
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 9.1e-164 580.5 362 71.8
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 3.5e-163 578.6 350 75.1
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 4.5e-163 578.2 362 72.7
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 7.7e-163 577.4 359 71.6
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.0e-162 577.0 355 71.5
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-162 576.2 348 74.7
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.9e-162 575.5 349 72.5
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 5.0e-162 574.7 364 72.5
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 8.5e-162 573.9 349 72.5
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.1e-161 573.5 353 74.2
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 4.2e-161 571.6 360 73.9
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.6e-160 569.7 364 70.6
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 6.1e-160 567.8 362 71.8
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.4e-159 566.6 357 72.8
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.4e-159 566.6 454 61.7
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 3.0e-159 565.5 366 71.9
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 4.0e-159 565.1 364 71.2
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 4.0e-159 565.1 361 70.9
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.2e-158 563.5 363 71.1
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.7e-158 561.2 364 70.3
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 9.8e-158 560.5 365 69.6
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 9.8e-158 560.5 367 69.5
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-157 560.1 349 73.6
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 2.8e-157 558.9 360 68.6
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.8e-157 558.9 313 80.8
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 3.7e-157 558.5 345 73.3
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 6.3e-157 557.8 364 70.3
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 8.3e-157 557.4 364 70.1
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 3.1e-156 555.4 360 70.0
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 3.1e-156 555.4 367 70.0
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 5.4e-156 554.7 354 71.8
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 3.5e-155 552.0 360 68.9
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.0e-154 550.4 365 69.9
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 6.6e-154 547.7 356 68.3
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.9e-153 546.2 357 69.5
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.9e-153 546.2 360 67.8
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 2.5e-153 545.8 366 67.2
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 2.5e-153 545.8 353 69.1
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 4.2e-153 545.0 358 69.8
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 7.2e-153 544.3 349 70.2
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.2e-152 543.5 360 67.2
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.2e-152 543.5 359 68.0
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.2e-152 543.5 360 68.1
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.6e-152 543.1 447 60.0
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 2.8e-152 542.3 364 69.8
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 2.8e-152 542.3 359 67.4
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 6.1e-152 541.2 318 76.4
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.0e-151 540.4 359 67.7
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.0e-151 540.4 318 76.4
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.8e-151 539.7 325 77.2
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.3e-151 539.3 359 67.4
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.3e-151 539.3 359 67.4
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 2.3e-151 539.3 319 75.5
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 2.3e-151 539.3 362 68.0
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 6.8e-151 537.7 318 76.1
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 5.7e-150 534.6 364 67.9
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 5.7e-150 534.6 352 67.9
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 7.5e-150 534.3 352 68.5
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 7.5e-150 534.3 352 67.9
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 1.3e-149 533.5 361 66.2
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 2.2e-149 532.7 363 65.3
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 7.0e-148 527.7 359 68.0
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.3e-146 522.7 354 68.4
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.9e-146 522.3 403 62.3
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 8.6e-146 520.8 367 65.9
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.3e-145 518.5 350 67.1
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 2.1e-144 516.2 358 66.5
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.8e-144 515.8 352 65.9
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.0e-143 513.8 363 65.8
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.8e-143 513.1 351 66.1
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 3.1e-143 512.3 353 68.0
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 5.2e-143 511.5 358 65.1
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.4e-140 503.4 360 62.5
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.4e-140 503.4 357 63.6
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.4e-140 501.5 363 66.4
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.0e-139 499.6 363 65.6
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 5.0e-138 495.0 314 74.2
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.6e-134 482.6 335 66.0
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.7e-133 479.9 359 63.0
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 7.0e-132 474.6 354 64.1
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 7.0e-132 474.6 361 61.2
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.7e-130 469.9 368 62.2
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 5.1e-130 468.4 345 65.2
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 4.3e-129 465.3 275 76.4
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 9.5e-129 464.2 275 76.0
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 8.1e-128 461.1 275 75.6
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 1.2e-123 447.2 264 75.0
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.8e-119 433.3 315 69.2
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 5.2e-119 431.8 258 74.8
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 6.9e-111 404.8 337 57.3
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 2.7e-107 392.9 287 63.1
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 6.6e-106 388.3 289 60.6
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.6e-105 384.4 232 74.6
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.6e-102 376.3 254 68.9
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.6e-99 367.1 230 70.9
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.7e-96 355.9 206 76.7
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 5.3e-95 352.1 363 46.3
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.3e-92 341.3 341 50.4
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 2.7e-91 339.7 237 65.0
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 4.6e-91 339.0 211 70.6
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 4.0e-87 325.9 267 57.7
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 5.3e-87 325.5 339 47.5
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 7.6e-86 321.6 360 45.8
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.8e-85 319.3 340 45.9
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 5.7e-81 305.4 194 73.7
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.3e-80 304.3 182 74.2
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.9e-79 298.5 197 68.5
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 9.4e-76 288.1 370 43.0
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.3e-74 283.5 209 63.6
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.1e-63 246.5 155 74.2
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.0e-58 231.5 242 48.8
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.1e-57 228.0 160 66.9
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 9.4e-52 208.4 280 41.8
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.1e-39 168.3 226 41.2
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.5e-38 163.3 110 72.7
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 2.8e-35 153.7 101 67.3
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 8.9e-34 148.7 99 67.7
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 5.4e-31 139.4 98 62.2
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 7.8e-22 109.0 97 47.4
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 9.5e-12 75.5 121 29.8
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 6.4e-08 62.8 102 37.3


User provided reference genes

Program Settings