Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 5.4e-112 407.9 208 100.0
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 8.1e-92 340.9 201 85.6
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 2.2e-89 332.8 206 81.1
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 3.8e-89 332.0 205 82.9
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 4.9e-89 331.6 206 80.6
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 2.7e-87 325.9 206 79.6
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 2.5e-85 319.3 208 76.9
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 4.3e-85 318.5 206 78.2
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.8e-84 315.8 216 74.1
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.6e-84 315.5 200 79.0
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 3.6e-84 315.5 202 78.7
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 6.2e-84 314.7 201 76.6
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.1e-83 313.9 205 76.6
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 1.4e-83 313.5 214 77.1
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 4.0e-83 312.0 204 76.5
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 5.3e-83 311.6 205 74.6
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 6.9e-83 311.2 198 76.3
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 4.4e-82 308.5 204 75.5
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 7.6e-82 307.8 199 73.9
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 9.9e-82 307.4 206 72.3
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.7e-81 306.6 205 74.6
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 2.2e-81 306.2 199 73.9
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.2e-81 306.2 206 74.8
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 1.4e-80 303.5 206 72.8
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.4e-80 303.5 202 75.2
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 3.2e-80 302.4 206 74.8
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 3.2e-80 302.4 204 75.0
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 5.4e-80 301.6 187 78.6
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 2.3e-78 296.2 204 72.5
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 3.0e-78 295.8 187 77.0
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 8.7e-78 294.3 190 73.7
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 8.7e-78 294.3 201 70.6
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.9e-77 293.1 206 71.8
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 9.6e-77 290.8 206 72.8
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 1.3e-76 290.4 205 69.8
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 3.6e-76 288.9 203 71.9
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.4e-75 287.0 201 72.6
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 6.9e-75 284.6 199 69.3
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.5e-74 283.5 206 70.4
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 4.5e-74 282.0 206 69.4
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 9.9e-74 280.8 187 74.3
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.2e-73 279.6 202 70.8
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 2.9e-73 279.3 193 71.0
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 6.4e-73 278.1 206 69.9
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 6.4e-73 278.1 204 66.7
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 2.4e-72 276.2 197 69.5
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 3.2e-72 275.8 218 65.1
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 7.1e-72 274.6 178 73.0
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 7.1e-72 274.6 204 66.2
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 1.2e-71 273.9 206 68.9
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.6e-71 273.5 212 67.5
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.0e-70 270.8 205 68.3
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 1.3e-70 270.4 217 65.4
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 1.5e-69 266.9 180 72.8
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 4.3e-69 265.4 185 71.9
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 5.6e-69 265.0 195 65.1
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 7.4e-69 264.6 192 68.2
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 9.6e-69 264.2 181 69.1
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 9.6e-69 264.2 203 66.0
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.3e-68 263.8 195 68.2
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 2.1e-68 263.1 199 68.8
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 3.7e-68 262.3 192 68.2
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 3.7e-68 262.3 205 67.8
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 6.2e-68 261.5 192 68.8
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.8e-67 260.0 191 69.1
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 2.4e-67 259.6 201 65.2
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 3.1e-67 259.2 197 65.0
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 3.1e-67 259.2 186 67.7
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 3.1e-67 259.2 186 67.7
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 4.0e-67 258.8 214 65.0
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 4.0e-67 258.8 202 66.8
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 5.3e-67 258.5 201 67.2
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 9.0e-67 257.7 203 67.5
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 9.0e-67 257.7 199 65.8
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.2e-66 257.3 206 64.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.5e-66 256.9 199 66.8
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 2.6e-66 256.1 200 63.5
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.4e-66 255.8 206 66.5
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 4.5e-66 255.4 204 63.7
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.0e-65 254.2 202 62.9
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.0e-65 254.2 185 63.8
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 2.5e-64 249.6 206 60.2
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 5.5e-64 248.4 180 64.4
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 9.3e-64 247.7 206 61.7
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 7.9e-63 244.6 214 60.3
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.0e-62 244.2 206 64.6
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.0e-62 244.2 206 64.6
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 5.1e-62 241.9 213 60.1
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 5.1e-62 241.9 158 74.1
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 6.7e-62 241.5 206 58.7
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 1.5e-61 240.4 179 70.9
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 5.7e-61 238.4 206 61.7
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 5.7e-61 238.4 206 61.7
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 7.4e-61 238.0 179 65.4
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.1e-60 236.5 214 58.9
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 2.8e-60 236.1 197 61.4
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 3.7e-60 235.7 184 62.0
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.1e-59 234.2 211 59.7
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.1e-59 232.3 205 60.5
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 6.9e-59 231.5 177 63.3
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 1.5e-58 230.3 213 58.7
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 1.5e-58 230.3 197 60.9
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.0e-58 229.9 206 59.7
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.0e-58 229.9 206 59.7
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 3.4e-58 229.2 185 61.6
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 5.8e-58 228.4 203 59.1
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.0e-57 227.6 203 59.1
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.7e-57 226.9 203 58.6
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.8e-57 225.7 202 56.9
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 2.7e-55 219.5 185 58.9
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 7.9e-55 218.0 179 58.7
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.0e-54 217.6 156 70.5
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 2.3e-54 216.5 188 59.6
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 3.9e-54 215.7 204 56.9
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 5.1e-54 215.3 206 55.8
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 1.1e-53 214.2 180 56.7
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 5.7e-53 211.8 191 56.5
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.3e-52 210.7 191 56.0
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.4e-51 206.5 204 54.9
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 9.0e-51 204.5 188 56.4
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.5e-50 203.8 183 57.4
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.5e-50 203.8 206 51.9
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 1.0e-49 201.1 187 58.3
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 2.2e-49 199.9 139 73.4
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 6.5e-49 198.4 206 52.9
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 6.5e-49 198.4 206 52.9
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.5e-49 198.4 189 51.9
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.5e-49 198.4 189 51.9
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 6.5e-49 198.4 189 51.9
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.1e-48 197.6 206 53.9
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.1e-48 197.6 208 51.0
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.9e-48 196.8 189 51.3
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 9.4e-48 194.5 181 52.5
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.7e-47 193.0 195 54.4
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.7e-47 193.0 188 53.2
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 3.9e-46 189.1 184 51.1
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 6.3e-44 181.8 201 48.3
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 4.1e-43 179.1 188 50.5
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 7.7e-42 174.9 178 54.5
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 2.9e-41 172.9 200 49.0
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 6.5e-41 171.8 203 48.8
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.9e-40 170.2 179 46.4
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.9e-40 170.2 179 46.4
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 3.2e-40 169.5 189 46.6
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.2e-40 169.5 191 45.5
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 7.2e-40 168.3 189 46.0
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.1e-39 166.8 209 43.1
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 4.7e-39 165.6 189 45.0
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.0e-38 162.9 153 52.9
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.9e-38 162.5 190 46.8
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 8.8e-38 161.4 131 66.4
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 2.0e-37 160.2 208 39.4
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 2.0e-37 160.2 147 57.8
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 4.4e-37 159.1 199 42.7
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 5.7e-37 158.7 184 47.3
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.3e-30 136.7 181 41.4
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 9.7e-29 131.3 156 44.2
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.4e-27 127.5 156 43.6
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.6e-26 124.0 106 60.4
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 5.5e-24 115.5 183 38.3
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 3.4e-21 106.3 90 57.8
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 4.4e-21 105.9 78 67.9
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 5.7e-21 105.5 76 75.0
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 3.1e-19 99.8 90 60.0
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 7.7e-18 95.1 159 34.6
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 5.0e-17 92.4 68 72.1
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 4.2e-16 89.4 63 63.5
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 2.7e-15 86.7 63 65.1
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 1.7e-09 67.4 202 23.3
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.5e-08 63.5 41 68.3
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 2.3e-06 57.0 201 23.4


User provided reference genes

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