Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 2.9e-168 595.1 293 100.0
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 3.3e-148 528.5 290 87.2
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 4.6e-134 481.5 287 80.8
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.4e-133 479.9 295 79.0
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 8.8e-133 477.2 283 80.2
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.5e-129 466.5 288 78.1
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.3e-128 463.4 286 77.3
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 5.0e-128 461.5 291 76.6
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 1.6e-126 456.4 288 78.5
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 8.8e-125 450.7 291 75.3
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 3.3e-124 448.7 292 75.3
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.3e-123 446.8 293 74.7
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.2e-123 446.0 297 71.7
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 2.2e-123 446.0 291 74.2
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 4.8e-123 444.9 291 75.3
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.5e-121 439.9 292 74.7
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.0e-121 439.5 297 72.4
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.6e-121 439.1 297 72.4
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 7.7e-121 437.6 294 73.1
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.0e-120 437.2 297 72.1
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.7e-120 436.4 291 73.5
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 1.7e-120 436.4 283 73.9
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 2.2e-120 436.0 283 73.5
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 5.0e-120 434.9 283 73.5
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.5e-119 432.6 297 72.7
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 3.2e-119 432.2 291 72.2
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 3.2e-119 432.2 297 72.1
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.2e-118 430.3 293 71.3
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 8.0e-118 427.6 283 72.4
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.4e-117 426.8 284 71.5
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.8e-117 426.4 295 70.2
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 3.0e-117 425.6 275 73.5
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.5e-116 423.3 272 73.9
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.5e-116 423.3 295 69.2
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 2.6e-116 422.5 270 74.4
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 3.3e-116 422.2 280 72.5
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 4.4e-116 421.8 290 71.0
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 4.4e-116 421.8 277 72.9
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 5.7e-116 421.4 289 72.7
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 7.4e-116 421.0 294 70.4
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 3.7e-115 418.7 277 69.7
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 3.7e-115 418.7 287 67.9
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.8e-114 416.4 266 74.1
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 3.1e-114 415.6 290 70.0
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 7.0e-114 414.5 293 67.9
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 2.6e-113 412.5 290 69.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.6e-113 412.5 285 69.8
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 3.5e-113 412.1 289 70.2
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.0e-112 410.6 287 70.7
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.9e-112 409.1 296 67.2
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.1e-111 407.1 282 70.9
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.5e-111 406.8 234 80.3
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 3.2e-111 405.6 289 68.5
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 2.1e-110 402.9 282 70.2
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.7e-110 402.5 290 69.0
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 2.7e-110 402.5 284 67.3
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 3.6e-110 402.1 294 66.7
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 6.1e-110 401.4 294 68.4
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.0e-109 400.6 285 65.6
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.4e-109 400.2 286 66.1
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 3.0e-109 399.1 289 67.8
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 4.0e-109 398.7 243 77.4
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 5.2e-109 398.3 282 69.1
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 5.2e-109 398.3 282 69.9
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.2e-108 397.1 283 69.3
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 5.7e-108 394.8 287 65.2
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.2e-107 392.9 284 64.8
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 3.7e-107 392.1 280 65.7
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 4.8e-107 391.7 275 66.9
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.4e-106 390.2 280 65.0
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.4e-106 390.2 283 68.6
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.8e-106 389.8 270 70.4
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.6e-105 386.7 248 72.6
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 2.7e-105 386.0 281 66.5
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 5.9e-105 384.8 278 65.1
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.1e-103 380.6 313 59.7
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.1e-103 380.6 255 69.0
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 5.5e-103 378.3 276 64.9
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 6.8e-101 371.3 299 61.2
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 3.4e-100 369.0 256 65.6
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 2.2e-99 366.3 281 65.1
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.4e-98 362.8 278 65.1
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 7.0e-98 361.3 254 69.7
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 4.5e-97 358.6 287 63.1
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 8.6e-96 354.4 276 62.3
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 2.5e-95 352.8 290 59.7
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 9.5e-95 350.9 260 61.9
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 4.7e-94 348.6 277 58.1
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 9.8e-92 340.9 276 61.6
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.6e-89 333.6 250 61.2
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.4e-85 320.5 238 64.7
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 6.0e-81 305.1 262 58.0
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 2.3e-80 303.1 293 49.5
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 8.0e-78 294.7 286 51.7
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.2e-76 290.8 286 50.0
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 4.4e-76 288.9 286 50.7
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 4.4e-76 288.9 286 50.7
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 5.8e-76 288.5 286 50.0
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 9.8e-76 287.7 289 51.6
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.7e-75 287.0 249 54.2
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 2.9e-75 286.2 278 51.4
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 3.2e-74 282.7 293 49.8
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 5.4e-74 282.0 278 50.0
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 7.0e-74 281.6 294 50.0
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 9.2e-74 281.2 269 50.9
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 9.2e-74 281.2 287 49.1
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.7e-73 279.6 277 57.4
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 7.8e-73 278.1 279 48.7
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 7.8e-73 278.1 289 49.1
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 3.0e-72 276.2 291 48.8
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.1e-72 275.4 287 49.5
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 3.3e-71 272.7 266 50.0
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 7.5e-68 261.5 273 49.8
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 1.3e-67 260.8 279 50.2
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 1.1e-61 241.1 281 43.1
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.3e-51 207.6 238 44.1
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 9.3e-50 201.4 187 50.8
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 4.6e-49 199.1 300 38.0
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.3e-48 196.8 240 43.8
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.1e-45 188.0 275 37.8
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.4e-42 177.6 225 40.0
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 6.0e-41 172.2 277 40.4
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 7.4e-39 165.2 217 43.8
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 7.4e-39 165.2 190 45.8
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 4.8e-38 162.5 179 44.7
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-37 161.4 184 45.7
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.4e-37 161.0 211 44.1
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-37 160.2 239 41.0
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 9.0e-37 158.3 190 45.8
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.5e-36 157.5 243 40.7
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-36 156.8 196 44.9
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 7.6e-36 155.2 196 45.4
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 3.8e-35 152.9 196 43.9
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.0e-32 144.8 278 35.6
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-31 141.0 142 47.9
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.4e-29 134.4 175 41.7
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 1.5e-28 131.0 142 47.2
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.5e-28 129.4 144 43.1
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 3.5e-25 119.8 190 38.4
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 3.5e-25 119.8 190 38.4
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.3e-22 111.3 172 36.6
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 3.7e-22 109.8 156 39.7
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-17 94.4 64 60.9
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 1.6e-17 94.4 64 60.9
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 2.7e-17 93.6 69 62.3
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 3.6e-17 93.2 93 52.7
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 2.3e-16 90.5 148 41.2
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.3e-15 86.3 100 47.0
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 8.2e-06 55.5 146 24.7


User provided reference genes

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