Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30821 Davidia involucrata HOM05D046959 ORTHO05D002581 4.1e-93 344.7 178 100.0
Dinv01612 Davidia involucrata HOM05D046959 ORTHO05D002581 2.4e-56 222.6 139 81.3
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 7.2e-13 78.2 49 77.6
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 7.2e-13 78.2 49 77.6
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 9.4e-13 77.8 49 77.6
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 1.6e-12 77.0 49 75.5
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 1.6e-12 77.0 49 77.6
Cfa006636 Carpinus fangiana HOM05D002454 ORTHO05D002581 2.7e-12 76.3 46 82.6
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 4.7e-12 75.5 49 75.5
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 4.7e-12 75.5 49 75.5
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 6.1e-12 75.1 49 73.5
Haze_04132 Corylus avellana HOM05D002454 ORTHO05D002581 6.1e-12 75.1 51 72.5
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 6.1e-12 75.1 49 73.5
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 1.4e-11 73.9 53 71.7
Hma1.2p1_1292F.1_g273860 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 1.4e-11 73.9 53 69.8
Hma1.2p1_1292F.1_g273861 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 1.4e-11 73.9 53 69.8
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 2.3e-11 73.2 52 69.2
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 3.0e-11 72.8 49 73.5
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 3.9e-11 72.4 50 76.0
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 3.9e-11 72.4 49 71.4
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 8.8e-11 71.2 50 74.0
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 8.8e-11 71.2 49 71.4
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 8.8e-11 71.2 49 69.4
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 8.8e-11 71.2 49 73.5
Dinv39041 Davidia involucrata HOM05D006448 ORTHO05D002680 1.1e-10 70.9 97 44.3
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 1.1e-10 70.9 49 67.3
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 2.0e-10 70.1 50 72.0
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 2.0e-10 70.1 49 69.4
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 2.0e-10 70.1 49 71.4
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 2.0e-10 70.1 49 71.4
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 2.6e-10 69.7 49 67.3
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 4.4e-10 68.9 49 67.3
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 5.7e-10 68.6 49 69.4
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 5.7e-10 68.6 49 69.4
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 7.4e-10 68.2 49 69.4
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 9.7e-10 67.8 49 69.4
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.3e-09 67.4 49 69.4
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.3e-09 67.4 49 69.4
Hma1.2p1_0371F.1_g138330 Hydrangea macrophylla HOM05D006448 ORTHO05D002680 1.3e-09 67.4 88 42.0
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 1.3e-09 67.4 54 63.0
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 1.3e-09 67.4 50 68.0
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 1.7e-09 67.0 50 70.0
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 1.7e-09 67.0 49 69.4
Aqoxy311s003 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 2.2e-09 66.6 47 74.5
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 2.2e-09 66.6 49 69.4
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 2.8e-09 66.2 58 62.1
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 2.8e-09 66.2 52 61.5
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 2.8e-09 66.2 49 71.4
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 3.7e-09 65.9 52 69.2
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 8.2e-09 64.7 49 67.3
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 8.2e-09 64.7 49 65.3
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 8.2e-09 64.7 49 67.3
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 8.2e-09 64.7 49 67.3
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 8.2e-09 64.7 49 67.3
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 1.1e-08 64.3 49 65.3
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 1.1e-08 64.3 49 65.3
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 1.1e-08 64.3 48 62.5
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 1.4e-08 63.9 49 71.4
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 1.8e-08 63.5 50 62.0
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.8e-08 63.5 52 61.5
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.8e-08 63.5 52 61.5
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 1.8e-08 63.5 49 63.3
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 1.8e-08 63.5 48 62.5
SalBow2G3642 Salvia bowleyana HOM05D002454 ORTHO05D002581 1.8e-08 63.5 45 73.3
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 2.4e-08 63.2 56 66.1
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 3.1e-08 62.8 52 65.4
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 3.1e-08 62.8 49 69.4
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 4.1e-08 62.4 49 69.4
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 4.1e-08 62.4 49 69.4
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 4.1e-08 62.4 49 69.4
Oeu043338.1 Olea europaea HOM05D001586 ORTHO05D001543 4.1e-08 62.4 49 61.2
Sc19g0005280 Simmondsia chinensis HOM05D002454 ORTHO05D002581 4.1e-08 62.4 66 53.0
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 5.3e-08 62.0 49 63.3
MSTRG.20409 Avicennia marina HOM05D002454 ORTHO05D002581 7.0e-08 61.6 50 66.0
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 7.0e-08 61.6 42 73.8
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 9.1e-08 61.2 49 61.2
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 1.2e-07 60.8 51 62.7
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.2e-07 60.8 50 66.0
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 1.6e-07 60.5 52 63.5
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 1.6e-07 60.5 49 57.1
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 1.6e-07 60.5 43 67.4
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 1.6e-07 60.5 49 65.3
Nitab4.5_0002761g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.0e-07 60.1 57 61.4
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 2.0e-07 60.1 50 62.0
Sc19g0005380 Simmondsia chinensis HOM05D002454 ORTHO05D002581 2.0e-07 60.1 47 63.8
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 2.6e-07 59.7 53 64.2
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 2.6e-07 59.7 56 55.4
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 3.5e-07 59.3 49 65.3
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 4.5e-07 58.9 50 56.0
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 4.5e-07 58.9 40 70.0
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 4.5e-07 58.9 40 70.0
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 4.5e-07 58.9 52 55.8
Actinidia05239 Actinidia chinensis HOM05D006448 ORTHO05D002680 5.9e-07 58.5 104 38.5
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 1.0e-06 57.8 49 63.3
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.3e-06 57.4 49 63.3
Peaxi162Scf00246g01119 Petunia axillaris HOM05D002454 ORTHO05D002581 1.3e-06 57.4 40 72.5
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 1.3e-06 57.4 46 60.9
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 1.7e-06 57.0 45 68.9
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 1.7e-06 57.0 45 68.9
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 1.7e-06 57.0 45 68.9
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 1.7e-06 57.0 45 68.9
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 1.7e-06 57.0 45 68.9
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 1.7e-06 57.0 45 68.9
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 1.7e-06 57.0 45 68.9
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 1.7e-06 57.0 45 68.9
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 1.7e-06 57.0 45 68.9
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.7e-06 57.0 49 63.3
Cfa012062 Carpinus fangiana HOM05D006448 ORTHO05D009463 2.2e-06 56.6 91 39.6
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 2.2e-06 56.6 49 57.1
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 2.2e-06 56.6 49 59.2
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 2.9e-06 56.2 49 61.2
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 2.9e-06 56.2 51 60.8
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 2.9e-06 56.2 50 54.0
BolC7t44640H Brassica oleracea HOM05D002454 ORTHO05D002581 3.8e-06 55.8 39 76.9
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 3.8e-06 55.8 49 61.2
A02p38900 Brassica napus HOM05D002454 ORTHO05D002581 5.0e-06 55.5 45 66.7
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 5.0e-06 55.5 42 71.4
FvH4_6g06640 Fragaria vesca HOM05D002454 ORTHO05D002581 5.0e-06 55.5 49 51.0
FAN02G0394 Fragaria x ananassa HOM05D002454 ORTHO05D002581 5.0e-06 55.5 49 51.0
FAN05G1278 Fragaria x ananassa HOM05D002454 ORTHO05D002581 5.0e-06 55.5 49 51.0
FAN09G3878 Fragaria x ananassa HOM05D002454 ORTHO05D002581 5.0e-06 55.5 49 51.0
FAN14G3867 Fragaria x ananassa HOM05D002454 ORTHO05D002581 5.0e-06 55.5 49 51.0
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 5.0e-06 55.5 40 67.5
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 5.0e-06 55.5 42 71.4
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 6.5e-06 55.1 50 52.0
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 6.5e-06 55.1 39 71.8
RcHm_v2.0_Chr3g0455841 Rosa chinensis HOM05D002454 ORTHO05D002581 6.5e-06 55.1 52 48.1


User provided reference genes

Program Settings