Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30762 Davidia involucrata HOM05D001016 ORTHO05D028673 1.2e-37 159.5 85 100.0
CSS0003349 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D004071 5.3e-22 107.5 85 72.9
Ciclev10015440m.g Citrus clementina HOM05D001016 ORTHO05D004071 1.3e-20 102.8 85 68.2
CSS0036432 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D004071 3.8e-20 101.3 86 70.9
vmacro03332 Vaccinium macrocarpon HOM05D001016 ORTHO05D004071 3.2e-19 98.2 85 67.1
CiPaw.09G122500 Carya illinoinensis HOM05D001016 ORTHO05D004071 2.1e-18 95.5 85 67.1
Atru.chr10.1195 Acer truncatum HOM05D001016 ORTHO05D004071 6.0e-18 94.0 79 69.6
Gohir.A06G138500 Gossypium hirsutum HOM05D001016 ORTHO05D004071 7.9e-18 93.6 87 69.0
Gohir.D06G143200 Gossypium hirsutum HOM05D001016 ORTHO05D004071 1.0e-17 93.2 88 67.0
Duzib192G0341 Durio zibethinus HOM05D001016 ORTHO05D004071 1.3e-17 92.8 88 67.0
Gorai.010G167000 Gossypium raimondii HOM05D001016 ORTHO05D004071 1.3e-17 92.8 88 67.0
Thecc.06G148900 Theobroma cacao HOM05D001016 ORTHO05D004071 1.3e-17 92.8 88 67.0
Sopen08g007290 Solanum pennellii HOM05D001016 ORTHO05D004071 2.3e-17 92.0 86 66.3
COL.COLO4_31054 Corchorus olitorius HOM05D001016 ORTHO05D004071 3.0e-17 91.7 88 65.9
PGSC0003DMG400007488 Solanum tuberosum HOM05D001016 ORTHO05D004071 3.0e-17 91.7 87 67.8
Peaxi162Scf00317g00114 Petunia axillaris HOM05D001016 ORTHO05D004071 5.1e-17 90.9 86 66.3
TAR626G0024 Trochodendron aralioides HOM05D001016 ORTHO05D004071 6.7e-17 90.5 87 63.2
Solyc08g016750.3 Solanum lycopersicum HOM05D001016 ORTHO05D004071 1.5e-16 89.4 86 65.1
Lsat_1_v5_gn_7_28120 Lactuca sativa HOM05D001016 ORTHO05D004071 2.5e-16 88.6 86 62.8
Haze_05616 Corylus avellana HOM05D001016 ORTHO05D004071 3.3e-16 88.2 85 63.5
Solyc04g008590.3 Solanum lycopersicum HOM05D001016 ORTHO05D004071 3.3e-16 88.2 86 65.1
TWI53G0035 Tripterygium wilfordii HOM05D001016 ORTHO05D004071 7.4e-16 87.0 87 63.2
Gorai.009G154500 Gossypium raimondii HOM05D001016 ORTHO05D004071 9.7e-16 86.7 88 64.8
Cfa000933 Carpinus fangiana HOM05D001016 ORTHO05D004071 1.3e-15 86.3 85 62.4
PGR031G1194 Punica granatum HOM05D001016 ORTHO05D004071 1.3e-15 86.3 85 63.5
TAR624G0005 Trochodendron aralioides HOM05D001016 ORTHO05D004071 1.3e-15 86.3 83 61.4
Rhsim13G0114600 Rhododendron simsii HOM05D001016 ORTHO05D004071 1.6e-15 85.9 85 62.4
Gohir.A05G147900 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.2e-15 85.5 87 63.2
Potri.017G076500 Populus trichocarpa HOM05D001016 ORTHO05D004071 2.2e-15 85.5 89 62.9
Manes.15G122600 Manihot esculenta HOM05D001016 ORTHO05D004071 3.7e-15 84.7 87 63.2
Nitab4.5_0000348g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 3.7e-15 84.7 90 62.2
CAN.G68.10 Capsicum annuum HOM05D001016 ORTHO05D004071 6.3e-15 84.0 86 60.5
CAN.G880.3 Capsicum annuum HOM05D001016 ORTHO05D004071 6.3e-15 84.0 86 64.0
Duzib235G1429 Durio zibethinus HOM05D001016 ORTHO05D004071 8.2e-15 83.6 88 63.6
Lsat_1_v5_gn_4_29381 Lactuca sativa HOM05D001016 ORTHO05D004071 8.2e-15 83.6 83 59.0
Prupe.4G082200 Prunus persica HOM05D001016 ORTHO05D004071 1.8e-14 82.4 85 60.0
TWI09G0448 Tripterygium wilfordii HOM05D001016 ORTHO05D004071 3.1e-14 81.6 87 58.6
CANSAT35G1281 Cannabis sativa HOM05D001016 ORTHO05D004071 4.1e-14 81.3 88 60.2
Actinidia39581 Actinidia chinensis HOM05D001016 ORTHO05D004071 5.3e-14 80.9 83 59.0
Nitab4.5_0011303g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 6.9e-14 80.5 100 56.0
Sopen04g003750 Solanum pennellii HOM05D001016 ORTHO05D004071 6.9e-14 80.5 89 61.8
Manes.17G071300 Manihot esculenta HOM05D001016 ORTHO05D004071 1.2e-13 79.7 87 57.5
Peaxi162Scf00394g00118 Petunia axillaris HOM05D001016 ORTHO05D004071 2.0e-13 79.0 85 58.8
DCAR_003906 Daucus carota HOM05D001016 ORTHO05D004071 2.6e-13 78.6 86 58.1
FvH4_3g05390 Fragaria vesca HOM05D001016 ORTHO05D004071 2.6e-13 78.6 85 58.8
FAN11G0472 Fragaria x ananassa HOM05D001016 ORTHO05D004071 2.6e-13 78.6 85 58.8
Actinidia07704 Actinidia chinensis HOM05D001016 ORTHO05D004071 4.5e-13 77.8 83 56.6
FAN25G0750 Fragaria x ananassa HOM05D001016 ORTHO05D004071 5.9e-13 77.4 85 58.8
MD05G1282600 Malus domestica HOM05D001016 ORTHO05D004071 7.7e-13 77.0 85 57.6
Ca_18175_v3 Cicer arietinum L. HOM05D001016 ORTHO05D004071 1.0e-12 76.6 85 56.5
Rhsim13G0114500 Rhododendron simsii HOM05D001016 ORTHO05D004071 1.0e-12 76.6 84 60.7
Cpa.g.sc246.2 Carica papaya HOM05D001016 ORTHO05D004071 1.3e-12 76.3 85 56.5
THA.LOC104814305 Tarenaya hassleriana HOM05D001016 ORTHO05D004071 1.3e-12 76.3 85 54.1
FAN21G2759 Fragaria x ananassa HOM05D001016 ORTHO05D004071 2.2e-12 75.5 85 60.0
Sed0004585 Sechium edule HOM05D001016 ORTHO05D004071 2.9e-12 75.1 87 57.5
PGSC0003DMG400031370 Solanum tuberosum HOM05D001016 ORTHO05D004071 2.9e-12 75.1 73 67.1
DCAR_007886 Daucus carota HOM05D001016 ORTHO05D028673 3.8e-12 74.7 86 55.8
Aa31LG10G6800 Aethionema arabicum HOM05D001016 ORTHO05D004071 6.5e-12 73.9 85 54.1
CiPaw.10G090900 Carya illinoinensis HOM05D001016 ORTHO05D028673 6.5e-12 73.9 74 59.5
HanXRQChr16g0525591 Helianthus annuus HOM05D001016 ORTHO05D004071 6.5e-12 73.9 86 55.8
HanXRQChr04g0114361 Helianthus annuus HOM05D001016 ORTHO05D004071 8.5e-12 73.6 86 59.3
Eucgr.E01909 Eucalyptus grandis HOM05D001016 ORTHO05D004071 1.1e-11 73.2 84 57.1
Gorai.010G238200 Gossypium raimondii HOM05D001016 ORTHO05D004071 1.4e-11 72.8 94 53.2
Nitab4.5_0003681g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 1.4e-11 72.8 73 64.4
GSVIVG01026353001 Vitis vinifera HOM05D001016 ORTHO05D004071 1.4e-11 72.8 85 55.3
QL05p057475 Quercus lobata HOM05D001016 ORTHO05D004071 7.2e-11 70.5 80 60.0
FAN16G1622 Fragaria x ananassa HOM05D001016 ORTHO05D004071 1.2e-10 69.7 85 56.5
Oeu052363.1 Olea europaea HOM05D001016 ORTHO05D004071 2.1e-10 68.9 85 51.8
Gohir.D06G204200 Gossypium hirsutum HOM05D001016 ORTHO05D004071 4.6e-10 67.8 98 53.1
HanXRQChr17g0564651 Helianthus annuus HOM05D001016 ORTHO05D004071 7.9e-10 67.0 79 54.4
Sabra04G0087800 Salix brachista HOM05D001016 ORTHO05D004071 7.9e-10 67.0 93 54.8
TPR.G9587 Trifolium pratense HOM05D001016 ORTHO05D004071 7.9e-10 67.0 85 51.8
THA.LOC104812671 Tarenaya hassleriana HOM05D001016 ORTHO05D004071 1.0e-09 66.6 85 52.9
Hund21544 Selenicereus undatus HOM05D001016 ORTHO05D004071 2.3e-09 65.5 83 50.6
Lj4g0002862 Lotus japonicus HOM05D001016 ORTHO05D004071 6.7e-09 63.9 84 51.2
Thhalv10016731m.g Eutrema salsugineum HOM05D001016 ORTHO05D004071 1.5e-08 62.8 89 48.3
RcHm_v2.0_Chr5g0014341 Rosa chinensis HOM05D001016 ORTHO05D004071 2.5e-08 62.0 85 52.9
ClCG03G006760 Citrullus lanatus HOM05D001016 ORTHO05D004071 5.7e-08 60.8 88 52.3
Nitab4.5_0008296g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 7.4e-08 60.5 58 63.8
arahy.Tifrunner.gnm1.ann1.IZT7WB Arachis hypogaea HOM05D001016 ORTHO05D004071 9.7e-08 60.1 85 48.2
arahy.Tifrunner.gnm1.ann1.KY59Q5 Arachis hypogaea HOM05D001016 ORTHO05D004071 1.7e-07 59.3 85 48.2
ECA234G4142 Erigeron canadensis HOM05D001016 ORTHO05D004071 1.7e-07 59.3 86 50.0
Migut.D01762 Erythranthe guttata HOM05D001016 ORTHO05D004071 2.2e-07 58.9 84 47.6
Cc03_g15970 Coffea canephora HOM05D001016 ORTHO05D004071 3.7e-07 58.2 86 48.8
MELO3C002746.2 Cucumis melo HOM05D001016 ORTHO05D004071 3.7e-07 58.2 89 50.6
PSO541G5613 Papaver somniferum HOM05D001016 ORTHO05D004071 3.7e-07 58.2 90 50.0
AL4G30570 Arabidopsis lyrata HOM05D001016 ORTHO05D004071 4.8e-07 57.8 79 50.6
Sp1g25980 Schrenkiella parvula HOM05D001016 ORTHO05D004071 6.3e-07 57.4 77 42.9
ECA234G4093 Erigeron canadensis HOM05D001016 ORTHO05D004071 1.1e-06 56.6 88 51.1
Nn3g20468 Nelumbo nucifera HOM05D001016 ORTHO05D028673 1.4e-06 56.2 85 49.4
PSO675G8635 Papaver somniferum HOM05D001016 ORTHO05D004071 1.4e-06 56.2 90 47.8
Lalb_Chr13g0293861 Lupinus albus HOM05D001016 ORTHO05D004071 2.4e-06 55.5 85 47.1
PSO017G6714 Papaver somniferum HOM05D001016 ORTHO05D004071 2.4e-06 55.5 90 47.8


User provided reference genes

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