Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 2.3e-42 175.3 94 100.0
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.7e-37 159.1 92 92.4
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 2.9e-37 158.3 92 91.3
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 4.9e-37 157.5 93 88.2
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 6.4e-37 157.1 92 90.2
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 8.4e-37 156.8 92 91.3
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 1.4e-36 156.0 92 91.3
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 1.4e-36 156.0 92 90.2
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 1.4e-36 156.0 92 90.2
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 1.9e-36 155.6 92 90.2
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 1.9e-36 155.6 92 91.3
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 2.4e-36 155.2 92 90.2
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 4.2e-36 154.5 92 90.2
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 5.4e-36 154.1 90 91.1
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 5.4e-36 154.1 90 92.2
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 5.4e-36 154.1 92 89.1
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 7.1e-36 153.7 90 91.1
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 9.3e-36 153.3 92 88.0
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 9.3e-36 153.3 92 88.0
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 9.3e-36 153.3 92 88.0
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 1.6e-35 152.5 90 90.0
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 1.6e-35 152.5 90 90.0
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 2.1e-35 152.1 92 88.0
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.1e-35 152.1 90 90.0
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.1e-35 152.1 90 90.0
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.1e-35 152.1 90 90.0
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.1e-35 152.1 90 90.0
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 2.1e-35 152.1 92 85.9
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 2.1e-35 152.1 92 85.9
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 2.1e-35 152.1 92 85.9
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 2.7e-35 151.8 89 91.0
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 2.7e-35 151.8 89 91.0
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 2.7e-35 151.8 90 90.0
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 3.5e-35 151.4 92 85.9
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 3.5e-35 151.4 92 85.9
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 3.5e-35 151.4 90 88.9
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 3.5e-35 151.4 92 89.1
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 4.6e-35 151.0 88 89.8
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 4.6e-35 151.0 92 88.0
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 4.6e-35 151.0 92 87.0
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 4.6e-35 151.0 88 89.8
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 4.6e-35 151.0 90 90.0
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 6.0e-35 150.6 90 88.9
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 6.0e-35 150.6 90 88.9
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 6.0e-35 150.6 90 88.9
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 6.0e-35 150.6 92 87.0
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 7.9e-35 150.2 92 87.0
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 7.9e-35 150.2 90 87.8
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 1.0e-34 149.8 88 88.6
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.0e-34 149.8 90 90.0
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 1.0e-34 149.8 90 87.8
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 1.3e-34 149.4 92 87.0
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 1.3e-34 149.4 92 83.7
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.3e-34 149.4 92 84.8
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 1.3e-34 149.4 88 90.9
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 1.8e-34 149.1 90 87.8
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 1.8e-34 149.1 89 87.6
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 1.8e-34 149.1 92 87.0
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 1.8e-34 149.1 92 87.0
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 2.3e-34 148.7 92 83.7
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 2.3e-34 148.7 92 83.7
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 2.3e-34 148.7 90 86.7
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 2.3e-34 148.7 92 87.0
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 2.3e-34 148.7 92 84.8
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 2.3e-34 148.7 85 91.8
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 3.0e-34 148.3 92 84.8
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 3.0e-34 148.3 90 86.7
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 3.0e-34 148.3 85 90.6
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 5.1e-34 147.5 90 85.6
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 5.1e-34 147.5 88 87.5
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 5.1e-34 147.5 90 84.4
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 5.1e-34 147.5 88 87.5
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 8.7e-34 146.7 88 87.5
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 8.7e-34 146.7 92 84.8
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 8.7e-34 146.7 89 85.4
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 1.1e-33 146.4 92 83.7
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 1.5e-33 146.0 92 81.5
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.5e-33 146.0 90 87.8
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 1.9e-33 145.6 88 86.4
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 1.9e-33 145.6 92 82.6
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 1.9e-33 145.6 92 82.6
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 1.9e-33 145.6 92 82.6
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 1.9e-33 145.6 92 82.6
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 1.9e-33 145.6 92 82.6
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 1.9e-33 145.6 92 82.6
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 2.5e-33 145.2 92 83.7
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 7.4e-33 143.7 92 81.5
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 7.4e-33 143.7 92 81.5
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 7.4e-33 143.7 88 85.2
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 9.6e-33 143.3 92 81.5
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 1.6e-32 142.5 90 82.2
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 1.6e-32 142.5 90 82.2
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 2.1e-32 142.1 92 80.4
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.1e-32 142.1 92 81.5
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 2.8e-32 141.7 90 81.1
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 8.1e-32 140.2 101 78.2
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 8.1e-32 140.2 100 78.0
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 2.4e-31 138.7 92 79.3
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.5e-30 136.0 90 84.4
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 2.0e-30 135.6 94 77.7
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 3.4e-30 134.8 90 80.0
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 4.5e-30 134.4 88 80.7
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 4.5e-30 134.4 109 70.6
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 4.5e-30 134.4 90 78.9
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 4.5e-30 134.4 90 78.9
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 5.8e-30 134.0 90 83.3
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 9.9e-30 133.3 92 78.3
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 1.3e-29 132.9 88 77.3
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 2.2e-29 132.1 105 71.4
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 1.9e-28 129.0 100 72.0
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 7.1e-28 127.1 89 71.9
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 1.2e-27 126.3 89 71.9
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 2.7e-27 125.2 147 54.4
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 4.6e-27 124.4 90 75.6
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 1.3e-26 122.9 73 84.9
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 6.7e-26 120.6 66 93.9
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 8.7e-26 120.2 89 68.5
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 1.1e-25 119.8 69 88.4
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 1.5e-25 119.4 66 92.4
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 1.9e-25 119.0 66 92.4
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 3.3e-25 118.2 67 89.6
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 5.6e-25 117.5 65 92.3
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 9.6e-25 116.7 93 69.9
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 2.8e-24 115.2 65 87.7
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 2.8e-24 115.2 86 72.1
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 4.8e-24 114.4 92 62.0
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 6.2e-24 114.0 89 71.9
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 1.4e-23 112.8 92 69.6
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 2.4e-23 112.1 66 86.4
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 6.9e-23 110.5 92 71.7
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 6.9e-23 110.5 66 84.8
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 2.6e-22 108.6 88 69.3
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 2.1e-19 99.0 94 61.7
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 2.2e-16 89.0 92 59.8
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.7e-16 88.2 50 90.0
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 3.1e-15 85.1 48 89.6
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 5.3e-15 84.3 49 87.8
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 5.9e-14 80.9 89 48.3
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 5.0e-13 77.8 166 39.2
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 1.9e-12 75.9 92 54.3
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 3.2e-12 75.1 165 38.8
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 5.5e-12 74.3 87 46.0
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 5.5e-12 74.3 42 88.1
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 7.2e-12 73.9 42 88.1
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 3.9e-10 68.2 90 43.3
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 1.1e-09 66.6 43 76.7
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 1.1e-09 66.6 43 76.7
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 3.3e-09 65.1 43 74.4
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 5.7e-09 64.3 54 63.0
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 1.3e-08 63.2 45 71.1
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 2.2e-08 62.4 42 73.8
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 3.7e-08 61.6 90 40.0
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 4.8e-08 61.2 45 68.9


User provided reference genes

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