Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.0e-63 246.5 117 100.0
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 6.0e-24 114.4 73 74.0
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 2.1e-16 89.4 80 52.5
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.5e-16 88.6 81 53.1
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 3.5e-16 88.6 105 43.8
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 6.0e-16 87.8 91 48.4
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 7.8e-16 87.4 95 47.4
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.7e-15 86.3 95 48.4
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 2.3e-15 85.9 83 53.0
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 2.3e-15 85.9 80 50.0
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 3.0e-15 85.5 70 57.1
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 3.0e-15 85.5 89 49.4
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 3.9e-15 85.1 73 53.4
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 5.1e-15 84.7 95 47.4
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 6.6e-15 84.3 79 49.4
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 6.6e-15 84.3 83 50.6
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 8.6e-15 84.0 80 50.0
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 1.5e-14 83.2 93 46.2
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.9e-14 82.8 93 46.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 2.5e-14 82.4 109 43.1
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 2.5e-14 82.4 86 48.8
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 3.3e-14 82.0 83 48.2
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 3.3e-14 82.0 98 44.9
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 4.3e-14 81.6 71 53.5
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 5.6e-14 81.3 110 40.9
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 5.6e-14 81.3 70 52.9
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 5.6e-14 81.3 64 53.1
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 5.6e-14 81.3 85 48.2
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 7.3e-14 80.9 89 44.9
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 9.5e-14 80.5 109 38.5
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 9.5e-14 80.5 86 46.5
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 1.2e-13 80.1 79 44.3
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.2e-13 80.1 82 50.0
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.2e-13 80.1 64 57.8
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.6e-13 79.7 79 45.6
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 2.1e-13 79.3 78 50.0
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 2.1e-13 79.3 105 41.0
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.8e-13 79.0 71 50.7
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 2.8e-13 79.0 86 44.2
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 2.8e-13 79.0 89 44.9
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.8e-13 79.0 69 50.7
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.8e-13 79.0 68 51.5
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 2.8e-13 79.0 70 51.4
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 2.8e-13 79.0 68 51.5
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 2.8e-13 79.0 78 46.2
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 2.8e-13 79.0 70 51.4
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 4.7e-13 78.2 92 43.5
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 4.7e-13 78.2 86 44.2
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 4.7e-13 78.2 70 52.9
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 8.1e-13 77.4 65 52.3
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.1e-12 77.0 95 45.3
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.8e-12 76.3 106 39.6
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.8e-12 76.3 106 41.5
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 1.8e-12 76.3 106 41.5
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.3e-12 75.9 65 52.3
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.3e-12 75.9 74 45.9
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 3.1e-12 75.5 96 38.5
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 3.1e-12 75.5 114 36.8
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 4.0e-12 75.1 116 35.3
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 5.2e-12 74.7 35 97.1
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 6.8e-12 74.3 94 42.6
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 1.2e-11 73.6 59 66.1
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.5e-11 73.2 116 37.9
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 2.0e-11 72.8 93 41.9
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 2.0e-11 72.8 69 49.3
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.6e-11 72.4 74 43.2
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 2.6e-11 72.4 95 38.9
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 2.6e-11 72.4 85 41.2
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.6e-11 72.4 71 46.5
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 2.6e-11 72.4 67 52.2
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 3.4e-11 72.0 81 39.5
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 3.4e-11 72.0 66 50.0
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 3.4e-11 72.0 66 50.0
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 3.4e-11 72.0 69 44.9
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 3.4e-11 72.0 82 42.7
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.4e-11 72.0 92 42.4
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 4.4e-11 71.6 69 46.4
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 4.4e-11 71.6 69 46.4
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 4.4e-11 71.6 69 46.4
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 4.4e-11 71.6 69 46.4
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 4.4e-11 71.6 74 50.0
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 5.8e-11 71.2 74 47.3
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 7.5e-11 70.9 105 39.0
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 7.5e-11 70.9 86 41.9
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 9.9e-11 70.5 69 44.9
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 9.9e-11 70.5 69 44.9
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 9.9e-11 70.5 69 44.9
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 9.9e-11 70.5 92 43.5
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 1.3e-10 70.1 66 47.0
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.2e-10 69.3 69 52.2
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.2e-10 69.3 95 48.4
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.9e-10 68.9 89 46.1
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 8.3e-10 67.4 117 38.5
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.9e-09 66.2 65 47.7
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.9e-09 66.2 82 45.1
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 2.4e-09 65.9 81 45.7
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.2e-09 65.5 64 45.3
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 5.4e-09 64.7 64 48.4
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 5.4e-09 64.7 78 48.7
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 7.1e-09 64.3 63 46.0
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 9.2e-09 63.9 66 42.4
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.2e-08 63.5 63 46.0
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 2.1e-08 62.8 61 47.5
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 2.1e-08 62.8 61 47.5
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 3.5e-08 62.0 60 46.7
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 4.6e-08 61.6 78 46.2
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 6.0e-08 61.2 107 38.3
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 7.8e-08 60.8 96 33.3
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 7.8e-08 60.8 31 80.6
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.0e-07 58.9 97 38.1
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.9e-07 58.5 66 42.4
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.1e-07 58.2 40 65.0
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 8.6e-07 57.4 61 42.6
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 8.6e-07 57.4 66 36.4
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.1e-06 57.0 97 37.1
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.1e-06 57.0 70 42.9
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.1e-06 57.0 70 42.9
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 4.3e-06 55.1 64 45.3


User provided reference genes

Program Settings