Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 1.5e-50 202.6 108 100.0
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 2.8e-36 155.2 104 77.9
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 5.0e-33 144.4 107 69.2
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 9.3e-32 140.2 102 69.6
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 1.4e-27 126.3 93 72.0
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 2.6e-26 122.1 112 64.3
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 7.7e-26 120.6 94 64.9
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 2.9e-25 118.6 93 64.5
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 1.4e-24 116.3 90 70.0
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 5.5e-24 114.4 102 64.7
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 1.2e-23 113.2 97 66.0
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 4.7e-23 111.3 112 60.7
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 6.1e-23 110.9 93 63.4
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 2.3e-22 109.0 93 62.4
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 3.9e-22 108.2 94 62.8
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 7.4e-21 104.0 89 64.0
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 2.8e-20 102.1 112 57.1
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 8.2e-20 100.5 110 50.9
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 1.8e-19 99.4 99 58.6
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 2.4e-19 99.0 104 60.6
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 2.4e-19 99.0 107 55.1
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 4.1e-19 98.2 93 54.8
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 5.3e-19 97.8 94 58.5
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 6.9e-19 97.4 103 57.3
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 6.9e-19 97.4 106 54.7
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 1.2e-18 96.7 93 63.4
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 2.6e-18 95.5 108 54.6
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 2.6e-18 95.5 68 67.6
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 2.6e-18 95.5 110 50.9
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 7.7e-18 94.0 100 57.0
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 1.0e-17 93.6 102 50.0
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 1.3e-17 93.2 97 56.7
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 1.3e-17 93.2 110 50.0
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 2.2e-17 92.4 82 61.0
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 5.0e-17 91.3 97 57.7
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 5.0e-17 91.3 64 79.7
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 6.5e-17 90.9 90 53.3
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 6.5e-17 90.9 74 67.6
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 8.5e-17 90.5 104 54.8
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 1.1e-16 90.1 108 52.8
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 1.4e-16 89.7 109 52.3
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.9e-16 89.4 109 52.3
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 1.9e-16 89.4 58 74.1
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 1.9e-16 89.4 110 48.2
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 2.5e-16 89.0 93 57.0
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 4.2e-16 88.2 94 57.4
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 7.2e-16 87.4 108 51.9
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 2.1e-15 85.9 108 50.9
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 2.7e-15 85.5 70 65.7
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 2.7e-15 85.5 90 56.7
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 4.7e-15 84.7 109 49.5
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 6.1e-15 84.3 66 69.7
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 6.1e-15 84.3 91 53.8
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 6.1e-15 84.3 108 51.9
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 6.1e-15 84.3 92 55.4
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 6.1e-15 84.3 92 53.3
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 8.0e-15 84.0 92 53.3
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 8.0e-15 84.0 92 53.3
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 8.0e-15 84.0 70 64.3
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 8.0e-15 84.0 95 52.6
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.0e-14 83.6 103 49.5
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 1.8e-14 82.8 60 73.3
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 2.3e-14 82.4 92 52.2
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 2.3e-14 82.4 104 49.0
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.9e-14 81.6 78 55.1
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 5.2e-14 81.3 92 52.2
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 5.2e-14 81.3 92 52.2
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 5.2e-14 81.3 92 52.2
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 1.1e-13 80.1 87 50.6
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 1.1e-13 80.1 93 50.5
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 2.0e-13 79.3 87 55.2
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 2.6e-13 79.0 82 52.4
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 2.6e-13 79.0 95 52.6
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 2.6e-13 79.0 57 71.9
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 2.6e-13 79.0 86 52.3
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 7.4e-13 77.4 81 53.1
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 9.7e-13 77.0 57 68.4
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 1.7e-12 76.3 87 51.7
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 1.7e-12 76.3 88 51.1
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 2.2e-12 75.9 94 52.1
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 2.2e-12 75.9 94 52.1
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 2.2e-12 75.9 96 52.1
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 4.8e-12 74.7 57 64.9
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 1.1e-11 73.6 84 53.6
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 1.4e-11 73.2 80 52.5
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.4e-11 73.2 109 41.3
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.1e-11 72.0 48 77.1
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 4.1e-11 71.6 104 48.1
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 5.3e-11 71.2 114 40.4
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 5.3e-11 71.2 103 47.6
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 9.1e-11 70.5 58 65.5
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 9.1e-11 70.5 104 47.1
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 1.6e-10 69.7 85 50.6
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 1.6e-10 69.7 61 59.0
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 1.7e-09 66.2 46 67.4
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 1.1e-08 63.5 57 59.6
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 5.2e-06 54.7 113 35.4


User provided reference genes

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