Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.8e-159 565.8 284 100.0
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 9.4e-108 394.0 231 83.5
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.2e-105 387.1 225 84.4
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.2e-105 387.1 225 84.4
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.3e-104 383.6 266 73.7
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.7e-104 383.3 226 81.9
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.2e-104 382.9 252 79.8
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 8.3e-104 380.9 263 71.5
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 8.3e-104 380.9 266 74.8
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 7.0e-103 377.9 253 78.3
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 9.1e-103 377.5 251 77.7
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.8e-101 372.1 260 72.3
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 5.0e-101 371.7 243 74.5
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 3.3e-100 369.0 239 76.2
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 5.6e-100 368.2 223 80.3
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 4.7e-99 365.2 252 74.2
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 6.1e-99 364.8 240 75.0
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.4e-98 363.6 268 70.1
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.4e-98 363.6 232 76.7
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.0e-98 362.5 264 70.1
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 4.0e-98 362.1 225 79.1
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 5.2e-98 361.7 256 70.7
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.2e-97 360.5 221 78.7
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.5e-97 360.1 283 66.4
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.5e-97 360.1 222 78.4
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.0e-97 359.8 269 69.1
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 2.0e-97 359.8 285 64.6
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.6e-97 359.4 227 77.5
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 3.4e-97 359.0 268 70.1
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 3.4e-97 359.0 283 66.1
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.4e-97 358.6 289 67.5
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 5.7e-97 358.2 227 77.5
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.7e-97 358.2 227 77.5
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.7e-96 356.7 277 68.2
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.7e-96 356.7 255 70.2
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.7e-96 356.7 284 66.9
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.7e-96 356.7 284 66.9
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 4.9e-96 355.1 217 78.3
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 4.9e-96 355.1 239 73.6
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.1e-95 354.0 267 69.3
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 3.2e-95 352.4 268 68.3
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 4.1e-95 352.1 257 70.4
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 4.1e-95 352.1 247 71.7
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 7.0e-95 351.3 274 65.3
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 7.0e-95 351.3 228 74.1
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 7.0e-95 351.3 259 66.8
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 9.2e-95 350.9 250 70.0
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.2e-94 350.5 225 76.9
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.6e-94 350.1 260 71.9
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.7e-94 349.4 221 76.9
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 2.7e-94 349.4 229 74.7
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 3.5e-94 349.0 244 69.7
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 4.6e-94 348.6 269 66.5
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 4.6e-94 348.6 270 68.9
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 4.6e-94 348.6 227 74.9
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 5.9e-94 348.2 227 74.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 7.8e-94 347.8 249 71.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.0e-93 347.4 227 74.9
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.3e-93 347.1 218 75.7
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.7e-93 346.7 262 68.3
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.7e-93 346.7 260 69.2
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.3e-93 346.3 254 70.9
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.0e-93 345.9 251 70.1
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 5.0e-93 345.1 265 65.7
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.1e-92 344.0 224 75.0
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.9e-92 343.2 239 71.5
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.9e-92 343.2 242 70.7
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 4.3e-92 342.0 238 71.0
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 9.5e-92 340.9 252 69.4
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 9.5e-92 340.9 250 68.8
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 1.2e-91 340.5 222 73.9
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 2.1e-91 339.7 259 68.3
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.8e-91 339.3 260 67.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.8e-91 339.3 260 67.7
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.7e-91 338.6 276 65.6
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.7e-91 338.6 250 68.4
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 6.2e-91 338.2 227 74.0
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 8.0e-91 337.8 260 66.9
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.4e-90 337.0 260 67.3
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.4e-90 337.0 251 66.5
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.8e-90 336.7 260 66.9
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.8e-90 336.7 261 65.1
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 2.3e-90 336.3 253 69.6
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.1e-90 335.9 273 65.2
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 4.0e-90 335.5 221 73.3
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.0e-90 335.5 252 67.9
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 5.2e-90 335.1 253 64.8
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.2e-89 334.0 254 69.7
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-89 334.0 257 68.5
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-89 334.0 257 68.5
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.2e-89 334.0 257 68.5
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.2e-89 334.0 257 69.3
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 2.0e-89 333.2 221 73.8
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-89 333.2 259 67.6
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.0e-89 333.2 259 67.6
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.6e-89 332.8 225 74.2
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.6e-89 332.8 219 73.1
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 9.8e-89 330.9 221 73.8
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.7e-88 330.1 231 70.6
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.7e-88 330.1 272 63.2
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.7e-88 328.9 216 73.6
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 3.7e-88 328.9 211 73.9
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 4.9e-88 328.6 209 75.1
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.9e-87 326.6 267 62.9
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 4.1e-87 325.5 242 66.5
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 4.1e-87 325.5 240 69.6
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 7.0e-87 324.7 276 62.0
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 7.0e-87 324.7 266 63.9
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.0e-86 323.2 225 70.2
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.0e-85 320.9 274 62.8
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 3.0e-85 319.3 263 62.0
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.0e-85 319.3 215 71.6
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.5e-84 317.0 224 70.1
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.5e-84 316.2 273 61.5
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 2.8e-83 312.8 211 75.4
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.8e-83 312.8 214 71.0
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.6e-83 312.4 210 74.8
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 6.2e-83 311.6 268 59.0
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 6.2e-83 311.6 182 82.4
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 8.1e-83 311.2 211 74.9
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 8.1e-83 311.2 211 74.9
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-82 310.8 226 66.8
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 4.0e-82 308.9 211 74.4
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 5.2e-82 308.5 226 66.8
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 5.2e-82 308.5 207 71.5
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-81 306.6 210 74.3
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 9.8e-81 304.3 268 57.8
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 2.2e-80 303.1 179 83.8
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.4e-79 300.4 213 72.8
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.9e-79 300.1 180 80.0
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 3.0e-77 292.7 219 65.8
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 3.3e-76 289.3 220 65.0
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 7.3e-76 288.1 200 71.5
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.8e-75 286.2 215 65.6
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.4e-74 283.9 223 62.3
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.4e-74 283.9 223 62.3
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.8e-74 283.5 220 67.7
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.3e-74 283.1 227 61.2
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 4.0e-74 282.3 223 61.9
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 4.0e-74 282.3 223 61.9
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 4.0e-74 282.3 223 61.9
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 3.7e-72 275.8 243 58.8
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.0e-69 267.7 217 64.5
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 6.8e-66 255.0 202 62.9
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.3e-61 240.7 280 51.8
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.7e-61 240.4 227 56.8
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 6.2e-59 231.9 235 52.3
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 2.4e-58 229.9 195 57.9
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 3.4e-57 226.1 136 79.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 9.9e-57 224.6 136 78.7
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.1e-55 221.1 223 53.8
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 7.1e-55 218.4 135 77.0
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 5.6e-52 208.8 225 51.6
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.8e-50 203.8 152 71.1
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.8e-50 203.8 220 47.7
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 2.4e-42 176.8 179 55.3
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 5.8e-41 172.2 176 48.3
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.9e-30 135.2 75 86.7
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 1.3e-24 117.9 114 56.1
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.6e-22 109.4 72 68.1
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 1.0e-16 91.7 69 65.2
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.2e-14 84.7 72 65.3
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.6e-14 84.3 89 48.3
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 7.9e-14 82.0 75 50.7
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 2.4e-10 70.5 44 79.5
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.0e-08 65.1 81 49.4
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.2e-07 60.1 34 76.5


User provided reference genes

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