Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30585 Davidia involucrata HOM05D006629 ORTHO05D008430 2.2e-79 298.9 153 100.0
CiPaw.01G246000 Carya illinoinensis HOM05D006629 ORTHO05D008430 1.4e-60 236.5 151 81.5
Haze_16533 Corylus avellana HOM05D006629 ORTHO05D008430 2.0e-59 232.6 152 80.9
Manes.04G115000 Manihot esculenta HOM05D006629 ORTHO05D008430 4.4e-59 231.5 152 80.3
Prupe.3G083500 Prunus persica HOM05D006629 ORTHO05D008430 5.7e-59 231.1 152 78.9
TAR383G1031 Trochodendron aralioides HOM05D006629 ORTHO05D008430 9.7e-59 230.3 152 80.3
CSS0009902 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 1.7e-58 229.6 157 78.3
Ciclev10026597m.g Citrus clementina HOM05D006629 ORTHO05D008430 4.8e-58 228.0 151 77.5
CSS0049498 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 8.2e-58 227.3 157 77.1
Actinidia15782 Actinidia chinensis HOM05D006629 ORTHO05D008430 1.4e-57 226.5 156 79.5
Cpa.g.sc10.240 Carica papaya HOM05D006629 ORTHO05D008430 3.1e-57 225.3 141 83.7
FAN02G3434 Fragaria x ananassa HOM05D006629 ORTHO05D008430 3.1e-57 225.3 154 76.0
QL05p028345 Quercus lobata HOM05D006629 ORTHO05D008430 5.3e-57 224.6 155 77.4
FvH4_6g30000 Fragaria vesca HOM05D006629 ORTHO05D008430 7.0e-57 224.2 154 76.6
FAN14G1255 Fragaria x ananassa HOM05D006629 ORTHO05D008430 7.0e-57 224.2 154 76.6
Nn8g39443 Nelumbo nucifera HOM05D006629 ORTHO05D008430 1.2e-56 223.4 153 77.8
Rhsim08G0214800 Rhododendron simsii HOM05D006629 ORTHO05D008430 1.2e-56 223.4 157 79.0
Cc04_g04220 Coffea canephora HOM05D006629 ORTHO05D008430 4.5e-56 221.5 156 77.6
RcHm_v2.0_Chr2g0136021 Rosa chinensis HOM05D006629 ORTHO05D008430 5.9e-56 221.1 153 75.8
Migut.I00787 Erythranthe guttata HOM05D006629 ORTHO05D008430 7.7e-56 220.7 154 76.0
Duzib235G0045 Durio zibethinus HOM05D006629 ORTHO05D008430 1.7e-55 219.5 145 80.7
PGR102G3125 Punica granatum HOM05D006629 ORTHO05D008430 1.7e-55 219.5 151 75.5
Lsat_1_v5_gn_5_131321 Lactuca sativa HOM05D006629 ORTHO05D008430 3.8e-55 218.4 159 75.5
MD00G1022200 Malus domestica HOM05D006629 ORTHO05D008430 6.5e-55 217.6 157 73.2
SGA_v2.0_scaffold5G02676 Striga asiatica HOM05D006629 ORTHO05D008430 8.5e-55 217.2 137 81.0
Gorai.010G226500 Gossypium raimondii HOM05D006629 ORTHO05D008430 1.9e-54 216.1 150 74.7
Gohir.D06G192700 Gossypium hirsutum HOM05D006629 ORTHO05D008430 2.5e-54 215.7 150 74.7
Gohir.A06G186400 Gossypium hirsutum HOM05D006629 ORTHO05D008430 7.2e-54 214.2 150 74.0
Atru.chr1.3007 Acer truncatum HOM05D006629 ORTHO05D008430 1.2e-53 213.4 151 75.5
Aqoxy7G03710 Aquilegia oxysepala HOM05D006629 ORTHO05D008430 2.1e-53 212.6 154 74.7
ECA234G2539 Erigeron canadensis HOM05D006629 ORTHO05D008430 2.1e-53 212.6 131 84.0
Potri.008G213200 Populus trichocarpa HOM05D006629 ORTHO05D008430 2.1e-53 212.6 145 75.9
Solyc03g116570.3 Solanum lycopersicum HOM05D006629 ORTHO05D008430 2.7e-53 212.2 158 73.4
DCAR_025501 Daucus carota HOM05D006629 ORTHO05D008430 3.6e-53 211.8 156 74.4
HanXRQChr12g0361441 Helianthus annuus HOM05D006629 ORTHO05D008430 4.7e-53 211.5 154 76.6
Lj5C70G0 Lonicera japonica HOM05D006629 ORTHO05D008430 4.7e-53 211.5 147 77.6
Sopen03g035480 Solanum pennellii HOM05D006629 ORTHO05D008430 6.1e-53 211.1 158 72.8
Ah.01g020720 Amaranthus hybridus HOM05D006629 ORTHO05D008430 8.0e-53 210.7 128 82.0
Eucgr.F02534 Eucalyptus grandis HOM05D006629 ORTHO05D008430 1.0e-52 210.3 152 75.7
MSTRG.11130 Avicennia marina HOM05D006629 ORTHO05D008430 1.4e-52 209.9 152 73.7
Sabra08G0150000 Salix brachista HOM05D006629 ORTHO05D008430 1.4e-52 209.9 145 75.2
THA.LOC104818030 Tarenaya hassleriana HOM05D006629 ORTHO05D008430 1.8e-52 209.5 152 72.4
SalBow2G3434 Salvia bowleyana HOM05D006629 ORTHO05D008430 4.0e-52 208.4 153 72.5
C03p90690 Brassica napus HOM05D006629 ORTHO05D008430 6.8e-52 207.6 152 73.7
CAN.G407.97 Capsicum annuum HOM05D006629 ORTHO05D008430 6.8e-52 207.6 158 72.2
Oeu052266.1 Olea europaea HOM05D006629 ORTHO05D008430 6.8e-52 207.6 153 73.9
Thecc.06G069100 Theobroma cacao HOM05D006629 ORTHO05D008430 8.8e-52 207.2 152 74.3
A08p02130 Brassica napus HOM05D006629 ORTHO05D008430 1.5e-51 206.5 152 73.0
Phvul.005G176800 Phaseolus vulgaris HOM05D006629 ORTHO05D008430 1.5e-51 206.5 152 71.1
BcaB04g17151 Brassica carinata HOM05D006629 ORTHO05D008430 2.0e-51 206.1 152 73.7
Sp1g39150 Schrenkiella parvula HOM05D006629 ORTHO05D008430 2.0e-51 206.1 152 71.1
BcaC01g01330 Brassica carinata HOM05D006629 ORTHO05D008430 2.6e-51 205.7 152 73.0
BolC3t21390H Brassica oleracea HOM05D006629 ORTHO05D008430 2.6e-51 205.7 152 73.0
AL1G60870 Arabidopsis lyrata HOM05D006629 ORTHO05D008430 3.4e-51 205.3 152 70.4
AT1G52590 Arabidopsis thaliana HOM05D006629 ORTHO05D008430 3.4e-51 205.3 152 71.1
Thhalv10011823m.g Eutrema salsugineum HOM05D006629 ORTHO05D008430 4.4e-51 204.9 152 70.4
Nitab4.5_0001764g0020 Nicotiana tabacum HOM05D006629 ORTHO05D008430 4.4e-51 204.9 156 70.5
Psat5g301760 Pisum sativum HOM05D006629 ORTHO05D008430 4.4e-51 204.9 130 83.1
Carub.0001s4159 Capsella rubella HOM05D006629 ORTHO05D008430 5.7e-51 204.5 152 70.4
Nitab4.5_0010254g0040 Nicotiana tabacum HOM05D006629 ORTHO05D008430 5.7e-51 204.5 156 70.5
BraA08t32260Z Brassica rapa HOM05D006629 ORTHO05D008430 7.5e-51 204.1 152 72.4
PGSC0003DMG400000613 Solanum tuberosum HOM05D006629 ORTHO05D008430 1.3e-50 203.4 158 72.2
MELO3C017890.2 Cucumis melo HOM05D006629 ORTHO05D008430 1.7e-50 203.0 120 83.3
Lj3g0011933 Lotus japonicus HOM05D006629 ORTHO05D008430 1.7e-50 203.0 152 71.1
MBI01_g47382_MAGBIO Magnolia biondii HOM05D006629 ORTHO05D008430 1.7e-50 203.0 152 73.0
Sc23g0006680 Simmondsia chinensis HOM05D006629 ORTHO05D008430 2.2e-50 202.6 146 74.0
TPR.G37207 Trifolium pratense HOM05D006629 ORTHO05D008430 2.2e-50 202.6 128 80.5
CARHR042720 Cardamine hirsuta HOM05D006629 ORTHO05D008430 2.8e-50 202.2 152 68.4
ClCG07G012710 Citrullus lanatus HOM05D006629 ORTHO05D008430 3.7e-50 201.8 150 70.0
Medtr2g103590 Medicago truncatula HOM05D006629 ORTHO05D008430 3.7e-50 201.8 148 73.0
Sed0005686 Sechium edule HOM05D006629 ORTHO05D008430 4.8e-50 201.4 134 76.1
EL10Ac9g21916 Beta vulgaris HOM05D006629 ORTHO05D008430 6.3e-50 201.1 119 83.2
CsaV3_4G001490 Cucumis sativus L. HOM05D006629 ORTHO05D008430 6.3e-50 201.1 120 82.5
PSO017G2975 Papaver somniferum HOM05D006629 ORTHO05D008430 3.1e-49 198.7 155 69.7
Ca_01063_v3 Cicer arietinum L. HOM05D006629 ORTHO05D008430 4.1e-49 198.4 119 84.9
Glyma.13G364600 Glycine max HOM05D006629 ORTHO05D008430 7.0e-49 197.6 126 80.2
Lalb_Chr22g0350921 Lupinus albus HOM05D006629 ORTHO05D008430 9.1e-49 197.2 123 80.5
VMungo1080G1280 Vigna mungo HOM05D006629 ORTHO05D008430 9.1e-49 197.2 152 70.4
Hund00536 Selenicereus undatus HOM05D006629 ORTHO05D008430 1.3e-47 193.4 118 81.4
Aa31LG10G2420 Aethionema arabicum HOM05D006629 ORTHO05D008430 1.7e-47 193.0 152 68.4
MBI01_g40020_MAGBIO Magnolia biondii HOM05D006629 ORTHO05D008430 2.2e-47 192.6 169 65.7
unitig_52.g17452 Utricularia gibba HOM05D006629 ORTHO05D008430 1.1e-46 190.3 153 67.3
Eucgr.F02111 Eucalyptus grandis HOM05D006629 ORTHO05D008430 1.9e-46 189.5 152 71.1
FAN09G3876 Fragaria x ananassa HOM05D006629 ORTHO05D008430 1.9e-46 189.5 213 54.0
TWI18G0931 Tripterygium wilfordii HOM05D006629 ORTHO05D008430 1.9e-46 189.5 152 69.7
Hma1.2p1_0042F.1_g025470 Hydrangea macrophylla HOM05D006629 ORTHO05D008430 1.0e-44 183.7 103 90.3
CDE06G1467 Ceratophyllum demersum HOM05D006629 ORTHO05D008430 1.4e-44 183.3 153 62.7
CDE04G2501 Ceratophyllum demersum HOM05D006629 ORTHO05D008430 4.0e-44 181.8 153 62.7
Rhsim04G0187300 Rhododendron simsii HOM05D006629 ORTHO05D008430 8.8e-44 180.6 147 68.0
vmacro18979 Vaccinium macrocarpon HOM05D006629 ORTHO05D008430 4.4e-43 178.3 161 65.2
ATR0322G059 Amborella trichopoda HOM05D006629 ORTHO05D008430 1.7e-42 176.4 147 61.9
Peaxi162Scf00332g00758 Petunia axillaris HOM05D006629 ORTHO05D008430 3.1e-41 172.2 158 64.6
GSVIVG01017300001 Vitis vinifera HOM05D006629 ORTHO05D008430 3.1e-41 172.2 91 95.6
Os01g0173000 Oryza sativa ssp. japonica HOM05D006629 ORTHO05D008430 2.1e-37 159.5 129 63.6
Zm00001eb122820 Zea mays HOM05D006629 ORTHO05D008430 2.8e-37 159.1 136 61.8
HPP92_021817 Vanilla planifolia HOM05D006629 ORTHO05D008430 8.0e-37 157.5 130 63.8
AUR62016355 Chenopodium quinoa HOM05D006629 ORTHO05D008430 1.2e-35 153.7 116 69.8
COL.COLO4_12927 Corchorus olitorius HOM05D006629 ORTHO05D008430 1.3e-34 150.2 97 80.4
AUR62011536 Chenopodium quinoa HOM05D006629 ORTHO05D008430 4.9e-34 148.3 86 87.2
PSO170G1412 Papaver somniferum HOM05D006629 ORTHO05D008430 4.9e-34 148.3 94 80.9
Mapoly0033s0027 Marchantia polymorpha HOM05D006629 ORTHO05D008430 2.5e-30 136.0 145 49.7
MBI14_g42957_MAGBIO Magnolia biondii HOM05D006629 ORTHO05D008430 1.2e-29 133.7 99 69.7
SMO266G0086 Selaginella moellendorffii HOM05D006629 ORTHO05D008430 4.7e-29 131.7 99 64.6
vmacro23010 Vaccinium macrocarpon HOM05D006629 ORTHO05D008430 1.3e-26 123.6 68 94.1
Pp3c1_15690 Physcomitrium patens HOM05D006629 ORTHO05D008430 2.0e-24 116.3 135 48.1
Cre14.g622750 Chlamydomonas reinhardtii HOM05D006629 ORTHO05D008430 2.7e-24 115.9 151 46.4
PRCOL_00001525 Prasinoderma coloniale HOM05D006629 ORTHO05D008430 3.5e-24 115.5 89 65.2
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 4.6e-24 115.2 66 89.4
MCO16G483 Micromonas commoda HOM05D006629 ORTHO05D008430 1.0e-23 114.0 98 57.1
FAN05G0483 Fragaria x ananassa HOM05D006629 ORTHO05D008430 2.1e-21 106.3 84 65.5
Lj3g0020878 Lotus japonicus HOM05D006629 ORTHO05D008430 1.4e-17 93.6 53 88.7
Zm00001eb421390 Zea mays HOM05D006629 ORTHO05D008430 1.4e-17 93.6 73 61.6
Zm00001eb227190 Zea mays HOM05D002349 ORTHO05D002464 3.2e-17 92.4 71 62.0
Zm00001eb108740 Zea mays HOM05D006629 ORTHO05D008430 4.1e-17 92.0 73 61.6
vmacro23011 Vaccinium macrocarpon HOM05D006629 ORTHO05D008430 1.3e-10 70.5 69 60.9
Zm00001eb319360 Zea mays HOM05D006629 ORTHO05D008430 1.4e-09 67.0 56 58.9
CDE04G3384 Ceratophyllum demersum HOM05D001690 ORTHO05D009096 5.4e-09 65.1 89 42.7
Atru.chr11.1963 Acer truncatum HOM05D001690 ORTHO05D009096 1.2e-08 63.9 141 30.5
Cpa.g.sc5.350 Carica papaya HOM05D001690 ORTHO05D009096 2.1e-08 63.2 89 39.3
PGR119G1314 Punica granatum HOM05D001690 ORTHO05D009096 3.5e-08 62.4 150 32.0
Aqoxy3G03080 Aquilegia oxysepala HOM05D001690 ORTHO05D009096 6.0e-08 61.6 115 35.7
FvH4_4g35000 Fragaria vesca HOM05D001690 ORTHO05D009096 6.0e-08 61.6 89 39.3
FAN12G1851 Fragaria x ananassa HOM05D001690 ORTHO05D009096 6.0e-08 61.6 89 39.3
unitig_699.g19928 Utricularia gibba HOM05D001690 ORTHO05D009096 7.8e-08 61.2 97 38.1
CsaV3_5G031860 Cucumis sativus L. HOM05D001690 ORTHO05D009096 1.0e-07 60.8 89 38.2
FAN07G2318 Fragaria x ananassa HOM05D001690 ORTHO05D009096 1.3e-07 60.5 89 39.3
FAN22G0616 Fragaria x ananassa HOM05D001690 ORTHO05D009096 1.3e-07 60.5 89 39.3
RcHm_v2.0_Chr4g0444521 Rosa chinensis HOM05D001690 ORTHO05D009096 1.3e-07 60.5 86 39.5
Sp1g21410 Schrenkiella parvula HOM05D001690 ORTHO05D009096 1.3e-07 60.5 88 37.5
MSTRG.621 Avicennia marina HOM05D001690 ORTHO05D009096 1.7e-07 60.1 86 36.0
MD13G1087000 Malus domestica HOM05D001690 ORTHO05D009096 1.7e-07 60.1 89 37.1
arahy.Tifrunner.gnm1.ann1.00SZA6 Arachis hypogaea HOM05D001690 ORTHO05D009096 3.0e-07 59.3 86 36.0
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 3.0e-07 59.3 86 36.0
Thhalv10008745m.g Eutrema salsugineum HOM05D001690 ORTHO05D009096 3.0e-07 59.3 95 37.9
HanXRQChr04g0103621 Helianthus annuus HOM05D001690 ORTHO05D009096 3.0e-07 59.3 86 36.0
Lsat_1_v5_gn_4_6521 Lactuca sativa HOM05D001690 ORTHO05D009096 3.9e-07 58.9 94 35.1
MD16G1087300 Malus domestica HOM05D001690 ORTHO05D009096 3.9e-07 58.9 89 37.1
BcaB07g32380 Brassica carinata HOM05D001690 ORTHO05D009096 5.1e-07 58.5 88 37.5
BcaC05g26303 Brassica carinata HOM05D001690 ORTHO05D009096 6.6e-07 58.2 88 36.4
BolC5t31021H Brassica oleracea HOM05D001690 ORTHO05D009096 6.6e-07 58.2 88 36.4
TWI36G1443 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 6.6e-07 58.2 89 38.2
Carub.0001s2353 Capsella rubella HOM05D001690 ORTHO05D009096 8.6e-07 57.8 88 35.2
CARHR024380 Cardamine hirsuta HOM05D001690 ORTHO05D009096 8.6e-07 57.8 88 36.4
COL.COLO4_37898 Corchorus olitorius HOM05D001690 ORTHO05D002627 8.6e-07 57.8 89 37.1
DCAR_026553 Daucus carota HOM05D001690 ORTHO05D009096 8.6e-07 57.8 89 32.6
MCO09G691 Micromonas commoda HOM05D006629 ORTHO05D049056 1.1e-06 57.4 101 35.6
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.5e-06 57.0 88 35.2
BraA09t39574Z Brassica rapa HOM05D001690 ORTHO05D009096 1.5e-06 57.0 88 36.4
Psat2g111480 Pisum sativum HOM05D001690 ORTHO05D009096 1.5e-06 57.0 87 35.6
QL03p062480 Quercus lobata HOM05D001690 ORTHO05D009096 1.5e-06 57.0 89 36.0
AL1G37900 Arabidopsis lyrata HOM05D001690 ORTHO05D009096 1.9e-06 56.6 88 34.1
Ciclev10033984m.g Citrus clementina HOM05D001690 ORTHO05D009096 1.9e-06 56.6 89 37.1
Psat2g111840 Pisum sativum HOM05D000009 ORTHO05D000008 1.9e-06 56.6 87 35.6
Gohir.D02G165700 Gossypium hirsutum HOM05D001690 ORTHO05D009096 2.5e-06 56.2 89 36.0
Gorai.005G185800 Gossypium raimondii HOM05D001690 ORTHO05D009096 2.5e-06 56.2 89 36.0
Prupe.1G259700 Prunus persica HOM05D001690 ORTHO05D009096 2.5e-06 56.2 88 37.5
SEGI_04544 Sequoiadendron giganteum HOM05D001690 ORTHO05D009096 2.5e-06 56.2 89 37.1
AT1G24095 Arabidopsis thaliana HOM05D001690 ORTHO05D009096 3.3e-06 55.8 95 34.7
Gohir.A03G142400 Gossypium hirsutum HOM05D001690 ORTHO05D009096 3.3e-06 55.8 89 36.0
Hma1.2p1_0160F.1_g070590 Hydrangea macrophylla HOM05D001690 ORTHO05D009096 3.3e-06 55.8 89 33.7
Manes.01G196800 Manihot esculenta HOM05D001690 ORTHO05D009096 3.3e-06 55.8 89 34.8
Sabra08G0111900 Salix brachista HOM05D001690 ORTHO05D009096 3.3e-06 55.8 89 36.0
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.3e-06 55.5 88 35.2
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 4.3e-06 55.5 93 34.4
Migut.L01445 Erythranthe guttata HOM05D001690 ORTHO05D009096 4.3e-06 55.5 89 34.8
Dinv30998 Davidia involucrata HOM05D001690 ORTHO05D009096 5.6e-06 55.1 89 34.8
Dinv31105 Davidia involucrata HOM05D001690 ORTHO05D009096 5.6e-06 55.1 89 34.8
Medtr5g035310 Medicago truncatula HOM05D001690 ORTHO05D009096 5.6e-06 55.1 86 34.9
Thecc.02G242600 Theobroma cacao HOM05D001690 ORTHO05D009096 7.3e-06 54.7 89 36.0
Aa31LG7G7870 Aethionema arabicum HOM05D001690 ORTHO05D009096 9.6e-06 54.3 128 29.7
Zm00001eb371950 Zea mays HOM05D001690 ORTHO05D009096 9.6e-06 54.3 89 34.8


User provided reference genes

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