Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 4.0e-190 667.9 331 100.0
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.8e-142 509.6 331 75.2
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.9e-140 501.5 332 74.7
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.4e-139 499.2 333 75.7
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.9e-136 489.6 328 76.8
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 3.3e-136 488.8 329 77.8
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 2.8e-135 485.7 331 74.0
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 4.7e-135 485.0 325 74.8
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 5.2e-134 481.5 329 76.3
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 5.2e-134 481.5 328 73.5
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.2e-130 470.3 331 70.4
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 7.8e-130 467.6 327 74.0
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.8e-126 456.4 329 70.2
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 4.0e-126 455.3 329 70.8
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 6.9e-126 454.5 329 70.2
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 6.9e-126 454.5 333 69.7
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 5.8e-125 451.4 330 66.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 6.4e-124 448.0 333 69.4
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.9e-123 446.4 325 68.6
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 6.0e-122 441.4 331 70.1
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.0e-121 440.7 331 68.3
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.0e-121 439.1 331 68.3
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 3.0e-121 439.1 331 67.4
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.9e-121 438.7 322 69.9
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 3.9e-121 438.7 323 68.4
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.7e-121 437.6 322 69.6
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 8.7e-121 437.6 337 66.8
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.9e-120 436.4 331 68.6
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 9.6e-120 434.1 251 85.7
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.8e-119 432.6 325 68.9
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.8e-118 429.9 335 65.1
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.4e-118 429.5 335 65.7
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 9.0e-118 427.6 328 66.5
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 4.5e-117 425.2 332 64.5
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 5.8e-117 424.9 331 66.2
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.7e-116 423.3 325 68.0
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 4.9e-116 421.8 332 65.1
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 4.9e-116 421.8 328 65.9
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.4e-116 421.4 322 69.6
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.4e-115 420.2 322 69.3
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.9e-115 419.9 293 73.4
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 4.2e-115 418.7 325 67.1
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 9.3e-115 417.5 325 66.8
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 9.3e-115 417.5 329 64.1
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 2.7e-114 416.0 326 64.4
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 4.6e-114 415.2 333 66.7
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 7.9e-114 414.5 329 65.3
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.8e-113 413.3 320 68.8
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.3e-113 412.9 328 64.3
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 3.9e-113 412.1 306 67.6
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 8.7e-113 411.0 328 62.5
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.6e-112 408.3 326 67.2
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 7.4e-112 407.9 310 67.4
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.6e-111 406.8 332 65.7
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.8e-111 405.2 326 66.6
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 6.2e-111 404.8 329 65.3
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.1e-111 404.4 328 63.7
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 8.1e-111 404.4 324 65.4
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.4e-110 403.7 327 64.2
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.4e-110 403.7 328 62.2
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 3.1e-110 402.5 306 67.0
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.0e-110 402.1 324 63.3
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 4.0e-110 402.1 327 63.9
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.0e-110 402.1 332 65.7
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.5e-109 400.2 330 60.3
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.7e-108 396.7 307 65.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.7e-108 396.7 253 77.1
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 2.2e-108 396.4 328 63.1
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.9e-108 396.0 312 65.4
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 2.9e-108 396.0 327 61.2
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 6.5e-108 394.8 328 61.0
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.2e-107 392.5 328 62.5
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 3.2e-107 392.5 327 62.4
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.6e-106 388.7 325 59.7
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 4.6e-106 388.7 299 66.6
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 6.0e-106 388.3 328 61.0
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.3e-105 387.1 331 60.4
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.8e-105 386.7 328 60.1
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.3e-105 386.3 325 59.7
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 5.1e-105 385.2 325 58.8
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.7e-105 384.8 325 59.7
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 8.7e-105 384.4 325 61.5
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 2.5e-104 382.9 327 61.2
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 4.3e-104 382.1 327 60.9
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 4.3e-104 382.1 324 60.5
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 4.3e-104 382.1 324 60.5
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 4.3e-104 382.1 302 67.9
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 5.7e-104 381.7 327 61.5
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.3e-103 380.6 324 60.2
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.6e-103 380.2 333 61.3
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.1e-103 379.8 329 61.4
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.7e-103 379.0 328 58.2
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 8.2e-103 377.9 324 59.9
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 8.2e-103 377.9 361 58.4
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.1e-102 377.5 319 61.8
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 1.1e-102 377.5 296 67.2
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.4e-102 376.3 328 58.8
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 2.4e-102 376.3 328 59.1
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.1e-102 375.6 328 58.5
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.2e-101 374.0 328 59.5
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 1.2e-101 374.0 275 69.8
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.0e-101 373.2 330 60.3
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 5.9e-101 371.7 306 64.7
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 5.9e-101 371.7 306 64.7
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.9e-100 369.4 332 56.3
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-98 363.6 332 56.9
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 2.1e-98 363.2 325 58.8
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 3.5e-98 362.5 332 56.9
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.5e-98 362.5 332 57.5
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.0e-97 360.9 332 56.6
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.0e-97 359.4 351 55.6
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 5.1e-97 358.6 327 59.3
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 5.1e-97 358.6 276 67.0
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.7e-96 355.1 355 54.4
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.4e-94 349.7 329 55.6
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.5e-93 347.1 336 56.0
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 4.5e-93 345.5 263 67.7
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.9e-91 340.1 337 56.4
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.5e-91 339.7 330 54.8
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 3.6e-90 335.9 262 66.0
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 7.9e-90 334.7 334 54.5
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 3.3e-88 329.3 331 50.2
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.3e-88 328.9 330 53.3
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.3e-88 328.9 325 51.4
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.7e-87 327.0 316 55.7
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 2.2e-87 326.6 329 50.8
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 2.8e-87 326.2 325 53.2
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.8e-87 326.2 295 56.6
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 4.8e-87 325.5 320 53.1
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 6.3e-87 325.1 330 52.1
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 8.2e-87 324.7 329 49.5
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-86 323.9 325 52.6
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.8e-86 323.6 330 51.5
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 3.1e-86 322.8 333 51.1
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 3.1e-86 322.8 331 50.8
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 3.1e-86 322.8 321 52.6
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.5e-85 320.5 310 53.9
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.6e-85 319.7 325 51.7
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.4e-85 319.3 326 50.6
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.2e-84 316.6 329 52.0
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 3.8e-84 315.8 325 50.5
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 6.5e-84 315.1 326 50.3
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.4e-83 313.9 326 49.7
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.4e-83 313.9 283 59.4
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.9e-83 313.5 286 62.9
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 3.2e-83 312.8 328 53.4
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.2e-82 310.8 326 49.4
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 7.4e-80 301.6 237 61.6
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 9.1e-78 294.7 295 52.2
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 6.5e-76 288.5 302 52.6
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 6.7e-73 278.5 285 50.9
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 2.6e-72 276.6 278 54.0
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 6.3e-71 271.9 289 48.4
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 2.7e-69 266.5 158 81.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.2e-66 257.7 237 59.5
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 2.1e-66 256.9 157 76.4
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 2.0e-64 250.4 239 53.6
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.3e-60 237.7 230 53.5
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.0e-60 235.7 160 72.5
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.9e-59 233.8 177 62.1
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.2e-59 233.0 153 79.7
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 1.2e-58 231.1 224 57.1
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 3.3e-51 206.5 206 52.9
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-50 204.5 247 46.6
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 8.3e-39 165.2 128 72.7
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.4e-38 163.7 263 38.4
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 1.6e-37 161.0 235 42.6
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.5e-35 151.8 89 83.1
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 3.9e-28 129.8 93 68.8
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.1e-28 129.4 79 78.5
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 8.1e-26 122.1 84 71.4
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 8.9e-25 118.6 80 68.8
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 3.4e-24 116.7 83 71.1
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.3e-23 114.8 132 41.7
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.9e-15 86.3 56 71.4


User provided reference genes

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