Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 0.0e+00 1391.7 719 100.0
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 0.0e+00 1107.0 775 76.9
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.5e-253 879.0 760 65.1
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 9.3e-253 877.1 760 65.1
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.1e-248 863.6 777 63.8
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 1.3e-246 856.7 804 60.6
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.2e-246 855.9 746 63.9
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 4.6e-244 848.2 746 62.9
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 3.3e-242 842.0 754 61.7
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 7.4e-242 840.9 738 62.1
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 2.8e-241 839.0 746 62.7
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.7e-241 838.6 747 62.8
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 3.4e-239 832.0 739 62.2
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.5e-237 824.7 740 61.5
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.0e-235 820.5 738 60.6
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.4e-235 820.1 762 60.5
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 2.3e-235 819.3 798 58.9
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 3.9e-235 818.5 740 61.5
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 9.7e-234 813.9 735 61.6
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.3e-233 813.5 851 56.9
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.7e-233 813.1 740 60.9
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 3.7e-233 812.0 750 62.0
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.8e-232 809.7 735 61.1
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.8e-232 809.7 740 60.5
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 9.1e-232 807.4 851 56.4
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.0e-230 803.9 741 61.0
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.9e-229 799.7 739 60.6
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 3.2e-229 798.9 761 59.0
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 5.5e-229 798.1 741 60.3
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 7.2e-229 797.7 806 56.9
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 3.0e-227 792.3 832 55.3
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.1e-226 790.4 772 58.7
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 4.8e-225 785.0 809 56.1
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 1.8e-224 783.1 738 58.9
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 4.1e-224 781.9 743 59.2
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 7.0e-224 781.2 737 60.5
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.2e-223 780.4 803 56.8
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.2e-223 780.4 809 55.9
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 1.5e-223 780.0 806 56.3
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.5e-223 778.5 790 57.2
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 2.5e-221 772.7 798 56.1
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.1e-220 769.6 777 56.9
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.4e-219 766.9 777 56.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 7.4e-218 761.1 762 57.1
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 1.8e-216 756.5 732 58.2
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 7.0e-216 754.6 743 58.1
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 2.2e-214 749.6 754 57.0
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 9.4e-213 744.2 745 56.5
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.1e-212 743.0 748 57.6
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.0e-211 739.2 805 54.2
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 4.0e-211 738.8 788 54.6
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 6.3e-209 731.5 777 54.7
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.1e-208 730.7 737 57.0
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.8e-208 729.9 765 54.9
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 5.3e-208 728.4 744 54.7
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 2.0e-207 726.5 754 56.4
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 2.2e-206 723.0 759 58.1
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 2.9e-206 722.6 753 56.3
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.1e-205 720.7 772 55.3
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 9.4e-205 717.6 745 54.1
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 9.8e-202 707.6 740 55.3
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 2.2e-201 706.4 770 53.2
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.1e-200 704.1 798 52.4
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.8e-200 703.4 750 55.6
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 7.0e-200 701.4 749 55.4
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 7.0e-200 701.4 733 54.7
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 2.0e-199 699.9 610 63.4
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 2.7e-199 699.5 745 53.8
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 3.3e-197 692.6 742 52.8
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 3.7e-193 679.1 713 55.7
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 4.9e-193 678.7 805 50.4
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 6.3e-193 678.3 736 54.2
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 8.3e-193 677.9 755 53.4
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.0e-191 673.3 760 50.9
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 5.0e-190 668.7 735 53.6
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 6.6e-190 668.3 745 52.8
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 6.6e-190 668.3 745 52.9
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.3e-189 665.6 822 49.9
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.2e-188 664.1 762 52.1
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 2.8e-188 662.9 611 60.2
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 4.0e-187 659.1 754 52.5
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 2.0e-186 656.8 671 56.0
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 7.5e-186 654.8 741 52.2
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.3e-185 654.1 748 51.1
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 5.4e-184 648.7 588 60.5
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 1.6e-183 647.1 746 53.6
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 6.0e-183 645.2 744 51.1
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.7e-182 643.7 753 50.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.5e-181 639.8 611 57.8
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 5.6e-181 638.6 738 49.5
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 7.3e-181 638.3 735 52.5
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 2.8e-180 636.3 768 51.4
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 5.4e-176 622.1 744 51.1
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 7.1e-176 621.7 743 50.5
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.2e-175 620.9 727 50.6
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 3.9e-174 615.9 744 50.3
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 8.6e-174 614.8 743 49.9
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.1e-173 614.4 745 49.7
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-173 614.0 744 49.9
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 7.3e-173 611.7 745 49.3
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 2.8e-172 609.8 721 50.3
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.8e-172 609.8 705 50.8
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 2.8e-172 609.8 692 52.6
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 4.0e-171 605.9 738 50.7
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 2.0e-170 603.6 740 48.8
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 2.0e-170 603.6 743 49.5
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 3.4e-170 602.8 677 52.4
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 4.4e-170 602.4 746 49.1
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.2e-167 594.3 369 78.6
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.7e-167 593.2 748 49.1
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.1e-164 583.6 636 50.8
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.8e-163 580.5 721 49.4
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.3e-153 547.7 738 47.7
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 2.7e-151 540.0 811 42.3
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.7e-150 537.3 820 43.4
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.5e-149 534.3 805 43.0
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.8e-142 510.8 718 46.4
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 3.1e-139 500.0 754 43.0
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.1e-127 460.7 505 51.3
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 4.6e-119 433.0 546 48.5
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.3e-105 388.3 646 38.5
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.7e-101 372.9 308 63.6
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.2e-98 365.2 659 37.9
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.6e-93 347.4 801 34.5
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 9.1e-91 339.0 450 42.9
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.7e-85 319.7 473 40.8
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.9e-81 307.4 461 39.9
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.6e-81 305.8 464 39.9
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.9e-76 290.0 453 37.1
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.9e-76 290.0 453 37.1
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.9e-76 290.0 407 40.5
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.0e-73 280.8 452 37.6
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.6e-73 279.3 448 39.5
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.2e-68 264.6 402 40.8
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.9e-68 264.2 299 54.8
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.6e-66 258.5 498 41.4
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.7e-60 238.4 316 51.6
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 5.1e-57 226.9 192 54.7
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.7e-50 204.5 611 33.2
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.3e-49 202.2 203 58.1
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.0e-41 174.5 407 37.3
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 4.0e-30 137.5 92 67.4
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.8e-22 112.1 357 32.8
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 3.8e-20 104.4 71 69.0
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 8.7e-17 93.2 103 48.5
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.1e-15 88.6 53 71.7
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 5.0e-12 77.4 74 50.0
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.0e-12 77.4 74 50.0
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 3.2e-11 74.7 58 53.4
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.6e-10 72.4 77 42.9
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 6.1e-10 70.5 53 56.6
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 6.7e-09 67.0 49 65.3
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.8e-07 61.6 45 64.4
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 4.8e-07 60.8 60 56.7
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 6.3e-07 60.5 65 55.4
unitig_61.g26414 Utricularia gibba HOM05D000584 ORTHO05D000458 2.4e-06 58.5 82 45.1


User provided reference genes

Program Settings