Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30498 Davidia involucrata HOM05D000044 ORTHO05D004085 2.7e-61 238.4 117 100.0
Hma1.2p1_1455F.1_g284450 Hydrangea macrophylla HOM05D000044 ORTHO05D004085 6.6e-31 137.5 145 57.9
Hma1.2p1_2022F.1_g311315 Hydrangea macrophylla HOM05D000044 ORTHO05D004085 6.6e-31 137.5 145 57.9
CSS0023396 Camellia sinensis var. sinensis HOM05D000044 ORTHO05D004085 4.4e-27 124.8 134 56.7
Lj9C508T12 Lonicera japonica HOM05D000044 ORTHO05D004085 3.7e-26 121.7 142 52.1
Actinidia24748 Actinidia chinensis HOM05D000044 ORTHO05D004085 4.9e-26 121.3 141 56.0
Rhsim12G0199100 Rhododendron simsii HOM05D000044 ORTHO05D004085 6.4e-26 120.9 146 52.1
Cc04_g03200 Coffea canephora HOM05D000044 ORTHO05D004085 1.4e-25 119.8 139 52.5
Rhsim08G0222500 Rhododendron simsii HOM05D000044 ORTHO05D004085 5.4e-25 117.9 145 51.7
Nitab4.5_0001315g0260 Nicotiana tabacum HOM05D000044 ORTHO05D004085 3.5e-24 115.2 147 48.3
Nitab4.5_0007758g0060 Nicotiana tabacum HOM05D000039 ORTHO05D004085 3.5e-24 115.2 147 48.3
Eucgr.F03025 Eucalyptus grandis HOM05D000044 ORTHO05D004085 1.3e-23 113.2 136 51.5
CAN.G438.11 Capsicum annuum HOM05D000039 ORTHO05D004085 1.7e-23 112.8 147 49.7
Sopen03g039620 Solanum pennellii HOM05D000044 ORTHO05D004085 3.9e-23 111.7 147 49.0
Solyc03g120800.4 Solanum lycopersicum HOM05D000044 ORTHO05D004085 5.0e-23 111.3 147 49.0
Duzib235G0193 Durio zibethinus HOM05D000044 ORTHO05D004085 6.6e-23 110.9 159 45.3
PGSC0003DMG401002540 Solanum tuberosum HOM05D000039 ORTHO05D004085 6.6e-23 110.9 147 48.3
TAR383G1102 Trochodendron aralioides HOM05D000039 ORTHO05D004085 8.6e-23 110.5 123 52.8
Actinidia08984 Actinidia chinensis HOM05D000044 ORTHO05D004085 1.5e-22 109.8 141 51.8
unitig_52.g17444 Utricularia gibba HOM05D000044 ORTHO05D004085 3.3e-22 108.6 132 51.5
QL05p022594 Quercus lobata HOM05D000039 ORTHO05D004085 7.3e-22 107.5 143 48.3
Nn2g11741 Nelumbo nucifera HOM05D000044 ORTHO05D004085 9.5e-22 107.1 130 46.9
Manes.11G046500 Manihot esculenta HOM05D000044 ORTHO05D004085 1.6e-21 106.3 161 44.1
Thecc.06G090400 Theobroma cacao HOM05D000044 ORTHO05D004085 2.1e-21 105.9 158 43.7
DCAR_023057 Daucus carota HOM05D001267 ORTHO05D001323 2.8e-21 105.5 152 44.7
GSVIVG01017084001 Vitis vinifera HOM05D000044 ORTHO05D004085 4.7e-21 104.8 147 46.9
arahy.Tifrunner.gnm1.ann1.920YZA Arachis hypogaea HOM05D000044 ORTHO05D004085 2.3e-20 102.4 143 45.5
arahy.Tifrunner.gnm1.ann1.EQZW73 Arachis hypogaea HOM05D000044 ORTHO05D004085 2.3e-20 102.4 143 45.5
ECA236G2647 Erigeron canadensis HOM05D000044 ORTHO05D004085 1.5e-19 99.8 136 47.1
CSS0003029 Camellia sinensis var. sinensis HOM05D000044 ORTHO05D004085 2.2e-18 95.9 132 48.5
Atru.chr1.3307 Acer truncatum HOM05D000039 ORTHO05D004085 3.7e-18 95.1 163 39.9
MD09G1211000 Malus domestica HOM05D000044 ORTHO05D004085 6.4e-18 94.4 145 43.4
SalBow2G0277 Salvia bowleyana HOM05D000039 ORTHO05D004085 6.4e-18 94.4 131 43.5
TPR.G17688 Trifolium pratense HOM05D000044 ORTHO05D004085 1.1e-17 93.6 132 47.0
TWI75G0172 Tripterygium wilfordii HOM05D000039 ORTHO05D004085 1.4e-17 93.2 162 40.7
COL.COLO4_30399 Corchorus olitorius HOM05D000044 ORTHO05D004085 3.2e-17 92.0 156 41.7
Ca_20382_v3 Cicer arietinum L. HOM05D000044 ORTHO05D004085 7.0e-17 90.9 128 46.1
Lalb_Chr25g0279871 Lupinus albus HOM05D000039 ORTHO05D004085 9.2e-17 90.5 125 41.6
Migut.I00888 Erythranthe guttata HOM05D000044 ORTHO05D004085 3.5e-16 88.6 146 39.7
Aqoxy7G03801 Aquilegia oxysepala HOM05D000044 ORTHO05D004085 6.0e-16 87.8 126 44.4
Ciclev10025449m.g Citrus clementina HOM05D000044 ORTHO05D004085 3.0e-15 85.5 201 34.3
PGR119G1838 Punica granatum HOM05D000044 ORTHO05D004085 5.1e-15 84.7 143 42.7
PGR102G2904 Punica granatum HOM05D000044 ORTHO05D004085 6.6e-15 84.3 143 42.0
Hund06619 Selenicereus undatus HOM05D000044 ORTHO05D004085 1.1e-14 83.6 131 42.0
CANSAT25G3063 Cannabis sativa HOM05D000044 ORTHO05D004085 1.5e-14 83.2 132 46.2
Potri.003G053700 Populus trichocarpa HOM05D000039 ORTHO05D004085 1.5e-14 83.2 205 34.1
PGR119G1734 Punica granatum HOM05D000044 ORTHO05D004085 1.5e-14 83.2 143 42.0
Manes.11G044766 Manihot esculenta HOM05D000044 ORTHO05D004085 3.3e-14 82.0 204 32.8
Manes.11G045000 Manihot esculenta HOM05D000044 ORTHO05D004085 3.3e-14 82.0 204 32.8
Medtr0147s0010 Medicago truncatula HOM05D000039 ORTHO05D004085 3.3e-14 82.0 132 45.5
C01p04890 Brassica napus HOM05D000044 ORTHO05D004085 7.3e-14 80.9 140 40.7
Lsat_1_v5_gn_9_87100 Lactuca sativa HOM05D000044 ORTHO05D004085 9.5e-14 80.5 135 43.0
BcaC09g52191 Brassica carinata HOM05D000044 ORTHO05D004085 1.6e-13 79.7 140 40.0
BolC1t00473H Brassica oleracea HOM05D000044 ORTHO05D004085 1.6e-13 79.7 140 40.0
BraA01t00436Z Brassica rapa HOM05D000044 ORTHO05D004085 2.1e-13 79.3 140 40.0
A01p04510 Brassica napus HOM05D000044 ORTHO05D004085 2.8e-13 79.0 140 40.0
Rhsim12G0198900 Rhododendron simsii HOM05D000044 ORTHO05D338705 3.6e-13 78.6 121 46.3
BraA03t15086Z Brassica rapa HOM05D000044 ORTHO05D004085 4.7e-13 78.2 147 38.1
Carub.0007s0657 Capsella rubella HOM05D000044 ORTHO05D004085 4.7e-13 78.2 148 37.8
Aqoxy7G03793 Aquilegia oxysepala HOM05D000044 ORTHO05D004085 6.2e-13 77.8 118 43.2
BcaNung04669 Brassica carinata HOM05D000044 ORTHO05D004085 6.2e-13 77.8 141 39.7
AT4G33870 Arabidopsis thaliana HOM05D000044 ORTHO05D004085 1.4e-12 76.6 147 38.1
Psat7g250640 Pisum sativum HOM05D000039 ORTHO05D004085 1.8e-12 76.3 157 36.9
CARHR241960 Cardamine hirsuta HOM05D000044 ORTHO05D004085 3.1e-12 75.5 150 38.0
THA.LOC104819530 Tarenaya hassleriana HOM05D000039 ORTHO05D004085 3.1e-12 75.5 137 40.9
Thhalv10025607m.g Eutrema salsugineum HOM05D000044 ORTHO05D004085 4.0e-12 75.1 139 38.1
AL7G17590 Arabidopsis lyrata HOM05D000044 ORTHO05D004085 1.2e-11 73.6 147 39.5
Potri.001G182400 Populus trichocarpa HOM05D000039 ORTHO05D004085 1.2e-11 73.6 240 29.6
Sp7g31590 Schrenkiella parvula HOM05D000044 ORTHO05D004085 1.5e-11 73.2 143 37.8
Carub.0007s0966 Capsella rubella HOM05D000044 ORTHO05D004085 2.0e-11 72.8 143 36.4
Sabra01G0145200 Salix brachista HOM05D000044 ORTHO05D004085 2.0e-11 72.8 192 32.8
HanXRQChr11g0339521 Helianthus annuus HOM05D000044 ORTHO05D004085 7.5e-11 70.9 139 36.7
Aqoxy7G03802 Aquilegia oxysepala HOM05D000044 ORTHO05D004085 9.9e-11 70.5 126 39.7
THA.LOC104804559 Tarenaya hassleriana HOM05D000039 ORTHO05D004085 9.9e-11 70.5 150 35.3
Thhalv10027558m.g Eutrema salsugineum HOM05D000044 ORTHO05D004085 2.2e-10 69.3 148 35.1
PSO566G0200 Papaver somniferum HOM05D000039 ORTHO05D004085 3.7e-10 68.6 123 36.6
PSO210G4517 Papaver somniferum HOM05D000044 ORTHO05D004085 2.4e-09 65.9 124 36.3
ClCG09G022680 Citrullus lanatus HOM05D000044 ORTHO05D004085 3.2e-09 65.5 142 40.8
MELO3C012610.2 Cucumis melo HOM05D000044 ORTHO05D004085 5.4e-09 64.7 143 38.5
CsaV3_7G022880 Cucumis sativus L. HOM05D000044 ORTHO05D004085 7.1e-09 64.3 144 38.2
GSVIVG01010156001 Vitis vinifera HOM05D000044 ORTHO05D004085 9.2e-09 63.9 136 38.2
Sed0006609 Sechium edule HOM05D000039 ORTHO05D004085 1.6e-08 63.2 137 40.1
PSO782G5733 Papaver somniferum HOM05D000039 ORTHO05D004085 2.1e-08 62.8 123 32.5
Ciclev10017909m.g Citrus clementina HOM05D000044 ORTHO05D004085 2.3e-07 59.3 135 35.6
PSO210G3584 Papaver somniferum HOM05D000034 ORTHO05D000037 2.3e-07 59.3 113 34.5
Actinidia07386 Actinidia chinensis HOM05D000044 ORTHO05D004085 3.0e-07 58.9 133 37.6
Eucgr.F01472 Eucalyptus grandis HOM05D000039 ORTHO05D004085 3.9e-07 58.5 131 35.9
Thecc.07G166500 Theobroma cacao HOM05D000044 ORTHO05D004085 3.9e-07 58.5 122 36.1
QL02p013226 Quercus lobata HOM05D000044 ORTHO05D004085 8.6e-07 57.4 133 36.1
TAR626G0795 Trochodendron aralioides HOM05D000044 ORTHO05D004085 8.6e-07 57.4 124 36.3
VMungo1080G0559 Vigna mungo HOM05D000044 ORTHO05D004085 1.9e-06 56.2 133 38.3
vmacro11703 Vaccinium macrocarpon HOM05D000044 ORTHO05D004085 2.5e-06 55.8 127 36.2
Glyma.15G259500 Glycine max HOM05D000044 ORTHO05D004085 5.6e-06 54.7 124 34.7
Os01g0712800 Oryza sativa ssp. japonica HOM05D000044 ORTHO05D004085 9.5e-06 53.9 116 33.6


User provided reference genes

Program Settings