Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 0.0e+00 1157.9 591 100.0
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 2.4e-177 626.3 406 82.8
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 8.8e-108 395.2 411 61.3
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 4.8e-106 389.4 432 56.5
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.5e-102 377.9 409 58.4
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 1.8e-97 360.9 415 56.6
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 3.6e-93 346.7 413 52.5
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 5.4e-89 332.8 412 51.9
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 5.4e-89 332.8 427 53.6
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 2.7e-88 330.5 423 50.1
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 7.3e-86 322.4 412 51.5
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 2.8e-85 320.5 415 48.4
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.0e-84 318.5 410 52.0
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.4e-81 308.1 492 44.3
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 2.4e-81 307.4 417 48.9
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 1.3e-79 301.6 416 47.4
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.7e-79 301.2 423 49.9
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 1.7e-79 301.2 410 49.3
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 3.9e-79 300.1 416 48.6
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 5.0e-79 299.7 449 46.1
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 2.5e-78 297.4 443 48.5
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 7.3e-78 295.8 414 48.6
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.2e-75 288.5 425 46.4
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 5.4e-73 279.6 438 46.3
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.7e-72 277.3 425 46.8
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 5.6e-70 269.6 412 43.0
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 5.6e-70 269.6 533 39.4
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 5.6e-70 269.6 422 44.3
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.6e-69 268.1 407 46.9
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 3.6e-69 266.9 383 47.0
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 6.8e-68 262.7 406 45.8
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.5e-67 261.5 406 45.1
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 9.9e-67 258.8 327 52.0
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.9e-66 257.3 413 44.6
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 3.5e-64 250.4 415 44.1
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.3e-63 248.4 405 41.7
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.3e-63 248.4 417 43.9
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 3.0e-63 247.3 356 48.0
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.1e-62 245.4 406 43.1
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 4.3e-62 243.4 389 43.7
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 5.6e-62 243.0 332 47.6
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.4e-60 238.4 414 44.4
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.2e-59 235.3 318 47.5
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.4e-59 233.8 410 43.4
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.4e-59 233.4 410 42.4
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 4.4e-59 233.4 432 40.7
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.3e-58 231.9 301 46.5
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 2.9e-58 230.7 407 42.5
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 4.2e-57 226.9 404 43.1
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 4.2e-57 226.9 404 43.1
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 1.2e-56 225.3 252 52.8
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 7.8e-56 222.6 442 40.5
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.0e-55 222.2 407 42.3
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.0e-55 222.2 405 42.0
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 3.3e-54 217.2 378 39.9
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.1e-53 214.5 406 40.1
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 4.8e-53 213.4 409 41.1
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 5.3e-52 209.9 362 39.5
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 9.0e-52 209.1 402 40.8
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.0e-51 208.0 376 39.6
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 4.2e-49 200.3 424 40.6
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 4.6e-48 196.8 413 39.7
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.8e-47 194.9 416 39.9
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 1.8e-47 194.9 352 44.9
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 2.3e-47 194.5 403 39.2
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.1e-47 193.4 413 36.8
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 8.7e-47 192.6 357 44.5
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.1e-46 192.2 399 38.3
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 3.3e-46 190.7 407 38.3
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 9.6e-46 189.1 398 36.2
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 1.3e-45 188.7 158 62.7
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.1e-45 188.0 401 37.2
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.8e-45 187.6 397 35.8
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 2.8e-45 187.6 362 39.8
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 3.6e-45 187.2 397 35.8
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.8e-44 184.9 404 39.4
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.8e-44 184.9 352 39.2
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 4.0e-44 183.7 418 38.3
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.3e-44 183.3 413 36.1
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 3.4e-43 180.6 394 38.1
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 7.6e-43 179.5 408 37.3
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 9.9e-43 179.1 415 35.7
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.7e-42 178.3 385 35.3
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.2e-42 177.9 400 35.8
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 2.9e-42 177.6 415 35.9
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.8e-42 177.2 421 35.2
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 6.4e-42 176.4 404 36.4
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.4e-41 175.3 387 37.5
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.4e-41 175.3 407 35.1
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.4e-41 175.3 401 35.4
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 2.4e-41 174.5 403 36.5
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 5.5e-41 173.3 415 35.7
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 7.1e-41 172.9 328 36.9
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.6e-40 171.8 401 36.7
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 2.7e-40 171.0 405 35.1
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.7e-40 171.0 394 37.1
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 7.9e-40 169.5 403 36.5
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 3.9e-39 167.2 401 34.2
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 3.9e-39 167.2 412 34.7
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 8.7e-39 166.0 403 36.0
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 8.7e-39 166.0 408 35.3
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 8.7e-39 166.0 125 68.8
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 8.7e-39 166.0 422 35.8
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-38 165.6 410 34.9
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.9e-38 164.9 440 35.9
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.9e-38 164.9 408 35.3
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.9e-38 164.9 401 34.7
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 4.3e-38 163.7 401 33.9
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 4.3e-38 163.7 219 44.3
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 7.4e-38 162.9 425 35.1
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.3e-37 162.2 416 35.1
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.6e-37 161.8 401 34.9
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 1.6e-37 161.8 363 36.6
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.6e-37 161.8 410 35.4
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.8e-37 161.0 432 33.3
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 3.7e-37 160.6 363 37.2
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 4.8e-37 160.2 419 34.6
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 4.0e-36 157.1 411 33.6
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 9.0e-36 156.0 313 38.7
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.2e-35 155.6 401 35.2
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.2e-35 155.6 408 32.1
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.5e-35 155.2 401 34.9
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.6e-35 154.5 354 36.2
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 2.2e-34 151.4 351 37.6
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 2.9e-34 151.0 358 33.2
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.9e-30 138.3 417 33.8
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 3.3e-30 137.5 408 32.4
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 5.3e-28 130.2 84 75.0
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.2e-27 129.0 225 39.6
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.6e-24 118.6 189 43.4
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.1e-24 116.7 352 31.5
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 8.7e-23 112.8 383 31.6
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 1.1e-20 105.9 435 28.0
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 1.1e-20 105.9 435 28.0
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 9.1e-20 102.8 332 31.9
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.5e-17 94.7 333 31.5
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.5e-17 94.7 326 32.2
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.1e-12 79.3 57 70.2
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 6.9e-12 76.6 61 60.7
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 6.9e-12 76.6 61 60.7
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 2.9e-10 71.2 38 84.2
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 1.9e-09 68.6 37 81.1
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 7.2e-09 66.6 57 63.2
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 9.4e-09 66.2 79 43.0
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 6.1e-08 63.5 80 40.0
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 5.2e-07 60.5 66 42.4
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 5.2e-07 60.5 67 38.8
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 2.6e-06 58.2 54 50.0
Lsat_1_v5_gn_1_31700 Lactuca sativa HOM05D003936 ORTHO05D229426 2.6e-06 58.2 111 43.2
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 3.3e-06 57.8 52 51.9
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 3.3e-06 57.8 52 51.9


User provided reference genes

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