Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 5.4e-139 497.7 254 100.0
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 2.4e-86 322.8 259 65.3
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 7.7e-85 317.8 259 65.6
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 1.9e-83 313.2 260 65.4
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 9.4e-83 310.8 260 65.8
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.6e-82 310.1 257 64.2
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.6e-82 310.1 257 63.4
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 2.1e-82 309.7 263 61.6
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 2.7e-82 309.3 267 60.7
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 4.7e-82 308.5 256 64.1
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 6.1e-82 308.1 259 61.8
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 8.0e-82 307.8 260 62.3
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 8.0e-82 307.8 258 62.0
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 8.0e-82 307.8 258 62.0
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 1.0e-81 307.4 260 62.7
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 2.3e-81 306.2 258 60.5
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 4.0e-81 305.4 260 62.7
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 4.0e-81 305.4 259 62.9
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 5.2e-81 305.1 271 59.4
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 8.8e-81 304.3 256 63.3
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 8.8e-81 304.3 260 62.3
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 1.1e-80 303.9 259 62.2
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 1.1e-80 303.9 258 61.6
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.5e-80 303.5 260 62.3
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 1.5e-80 303.5 271 59.8
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 2.6e-80 302.8 258 60.5
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 3.3e-80 302.4 257 63.0
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 4.4e-80 302.0 260 62.7
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 5.7e-80 301.6 260 62.7
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 2.2e-79 299.7 261 60.5
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 2.2e-79 299.7 258 61.6
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 2.8e-79 299.3 256 60.5
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 4.8e-79 298.5 259 60.6
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 1.1e-78 297.4 258 60.5
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 1.1e-78 297.4 268 60.4
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 1.4e-78 297.0 275 58.2
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 1.8e-78 296.6 258 59.7
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 2.4e-78 296.2 261 59.8
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 2.4e-78 296.2 258 60.1
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 2.4e-78 296.2 275 57.8
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 3.1e-78 295.8 272 58.1
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 4.1e-78 295.4 259 60.6
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 5.3e-78 295.0 260 59.6
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 5.3e-78 295.0 257 61.1
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 5.3e-78 295.0 254 59.1
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 7.0e-78 294.7 266 58.6
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 1.2e-77 293.9 258 58.9
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 1.2e-77 293.9 275 57.5
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 1.2e-77 293.9 260 61.9
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 1.6e-77 293.5 259 61.8
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 3.5e-77 292.4 259 60.2
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 1.0e-76 290.8 259 60.6
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 1.3e-76 290.4 257 59.9
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 1.7e-76 290.0 258 58.9
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 2.2e-76 289.7 259 61.8
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 2.2e-76 289.7 257 60.7
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 2.9e-76 289.3 258 58.9
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 3.8e-76 288.9 264 58.0
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 3.8e-76 288.9 258 60.9
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 6.5e-76 288.1 265 58.9
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 8.5e-76 287.7 262 59.5
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 1.5e-75 287.0 275 56.0
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 2.5e-75 286.2 266 56.0
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 2.5e-75 286.2 257 59.1
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 3.2e-75 285.8 262 58.4
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 4.2e-75 285.4 258 57.8
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 4.2e-75 285.4 259 58.7
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 5.5e-75 285.0 264 57.2
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 5.5e-75 285.0 259 58.7
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 5.5e-75 285.0 257 60.3
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 1.6e-74 283.5 259 61.4
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 6.1e-74 281.6 250 62.0
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 2.3e-73 279.6 263 58.2
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 3.4e-72 275.8 258 58.1
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 5.7e-72 275.0 259 58.3
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 7.5e-72 274.6 256 58.2
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 7.5e-72 274.6 261 57.5
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 1.3e-71 273.9 259 59.1
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 1.7e-71 273.5 258 58.5
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 2.8e-71 272.7 258 57.8
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 4.8e-71 271.9 251 57.8
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 1.4e-70 270.4 258 57.8
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 1.8e-70 270.0 259 57.5
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 2.4e-70 269.6 258 57.8
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 2.4e-70 269.6 282 54.6
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 3.1e-70 269.2 256 58.2
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 9.1e-70 267.7 260 57.3
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 1.2e-69 267.3 335 47.8
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 2.0e-69 266.5 257 57.6
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 2.7e-69 266.2 259 56.8
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 2.7e-69 266.2 260 56.2
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 2.7e-69 266.2 260 56.2
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 3.5e-69 265.8 259 56.0
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 7.7e-69 264.6 267 53.6
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 1.7e-68 263.5 259 55.6
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 8.5e-68 261.2 259 55.6
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 1.9e-67 260.0 255 55.3
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.9e-67 260.0 261 55.9
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 7.2e-67 258.1 213 65.7
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.2e-66 257.3 261 55.6
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 2.7e-66 256.1 262 55.0
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 3.0e-65 252.7 257 55.3
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 1.0e-60 237.7 220 58.2
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 8.6e-60 234.6 411 38.7
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 1.1e-59 234.2 244 54.9
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.1e-59 234.2 204 62.3
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 2.8e-58 229.6 248 53.2
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 4.0e-57 225.7 263 48.3
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 9.8e-56 221.1 258 47.3
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 4.1e-54 215.7 259 47.9
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 5.9e-53 211.8 264 45.8
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 7.8e-53 211.5 166 64.5
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 1.7e-52 210.3 257 45.1
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 1.9e-51 206.8 191 59.2
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 1.2e-50 204.1 254 46.5
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 1.4e-49 200.7 246 48.0
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 6.8e-49 198.4 259 45.2
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 1.5e-48 197.2 258 44.6
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 2.7e-45 186.4 260 44.6
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 1.0e-44 184.5 133 69.9
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 2.3e-44 183.3 255 42.4
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 3.9e-44 182.6 252 43.3
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 8.6e-44 181.4 131 68.7
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 1.6e-42 177.2 133 67.7
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 8.9e-41 171.4 192 54.7
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 6.6e-36 155.2 131 64.9
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 6.2e-34 148.7 254 42.1
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 1.5e-32 144.1 198 48.0
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 9.9e-32 141.4 113 62.8
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 6.2e-26 122.1 134 53.7
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 7.8e-21 105.1 133 45.1
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 6.7e-12 75.5 71 54.9
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 1.9e-11 73.9 118 37.3
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 5.5e-06 55.8 237 30.4


User provided reference genes

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