Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 0.0e+00 1476.5 736 100.0
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 3.6e-276 954.9 835 63.6
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.4e-126 458.0 749 41.8
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 3.1e-110 403.7 728 38.9
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.3e-105 387.5 856 35.2
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.3e-89 334.3 736 35.2
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 7.7e-61 239.6 564 35.5
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.5e-51 208.8 868 26.8
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 3.4e-48 197.6 833 27.5
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 5.4e-46 190.3 807 26.4
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 6.6e-44 183.3 827 26.0
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 8.6e-44 183.0 822 26.0
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 4.3e-43 180.6 867 25.6
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.1e-38 166.0 815 26.5
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.2e-37 162.5 714 27.9
Rhsim08G0224300 Rhododendron simsii HOM05D004021 ORTHO05D003767 4.6e-37 160.6 468 30.3
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.9e-37 160.2 719 27.4
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 5.9e-37 160.2 810 26.3
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.7e-36 158.7 704 27.8
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.0e-36 157.9 714 27.2
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.9e-35 155.2 836 25.7
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 2.5e-35 154.8 717 27.6
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.5e-35 154.8 717 27.6
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 7.5e-32 143.3 698 26.8
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 8.3e-31 139.8 765 23.9
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 4.6e-29 134.0 519 29.3
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 6.0e-29 133.7 544 26.5
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 6.0e-29 133.7 642 26.9
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 7.8e-29 133.3 826 23.8
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.0e-28 132.9 602 28.1
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.7e-28 132.1 798 22.8
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 2.3e-28 131.7 595 26.7
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.1e-27 129.4 865 24.9
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.5e-27 129.0 779 26.3
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 3.3e-27 127.9 563 26.5
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.2e-26 125.9 523 28.9
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.6e-26 125.6 545 27.5
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 2.1e-26 125.2 822 24.1
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.2e-26 123.6 824 23.2
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 6.2e-26 123.6 649 26.0
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 8.1e-26 123.2 511 28.4
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 2.3e-25 121.7 513 26.9
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.1e-25 121.3 824 23.3
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.1e-25 121.3 824 22.7
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 3.1e-25 121.3 519 27.2
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.2e-24 119.4 492 26.8
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 1.5e-24 119.0 824 23.2
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.5e-24 119.0 523 27.5
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 5.8e-24 117.1 558 27.2
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.3e-23 115.9 792 22.6
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 2.9e-23 114.8 508 26.6
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.4e-22 112.5 516 26.9
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 1.9e-22 112.1 796 23.1
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.4e-22 111.7 792 22.7
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.4e-22 111.7 286 32.5
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.2e-22 111.3 797 23.1
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 3.2e-22 111.3 511 26.6
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 9.2e-22 109.8 507 26.8
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.7e-21 108.2 506 26.7
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 3.5e-21 107.8 236 35.2
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 3.9e-20 104.4 509 27.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.9e-20 104.4 654 24.2
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 5.1e-20 104.0 287 31.7
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 4.3e-19 100.9 510 26.3
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 5.6e-19 100.5 605 24.6
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.1e-18 98.6 683 24.0
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 4.7e-18 97.4 619 24.7
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.1e-17 96.3 530 25.7
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.4e-17 95.9 504 26.0
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 4.0e-17 94.4 499 26.7
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 8.9e-17 93.2 480 24.8
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.2e-16 92.8 517 26.7
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.5e-16 92.4 465 24.7
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.6e-16 90.1 493 26.4
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 9.9e-16 89.7 638 24.3
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.7e-15 89.0 649 24.0
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-15 89.0 483 25.7
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 3.8e-15 87.8 566 24.2
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 3.8e-15 87.8 524 24.6
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 8.4e-15 86.7 517 24.8
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.1e-14 86.3 524 24.8
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.9e-14 85.5 757 23.1
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.2e-14 84.7 545 24.2
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 3.2e-14 84.7 676 23.8
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 9.2e-14 83.2 556 23.9
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.6e-13 82.4 468 25.0
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.6e-13 82.4 676 23.8
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 2.1e-13 82.0 346 26.3
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 2.7e-13 81.6 482 25.7
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 3.5e-13 81.3 309 27.2
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 6.0e-13 80.5 552 24.5
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 6.0e-13 80.5 522 25.5
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 7.8e-13 80.1 523 25.8
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.0e-12 79.7 304 27.3
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.0e-12 79.7 764 23.6
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.7e-12 79.0 523 25.6
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.7e-12 79.0 490 25.1
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.9e-12 77.8 466 24.5
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 5.1e-12 77.4 491 25.7
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 2.5e-11 75.1 500 25.6
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.3e-11 74.7 279 27.6
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 3.3e-11 74.7 548 23.0
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 4.3e-11 74.3 596 25.2
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 4.3e-11 74.3 515 24.5
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 4.3e-11 74.3 262 29.4
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 4.3e-11 74.3 225 32.4
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 1.2e-10 72.8 597 23.3
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 2.8e-10 71.6 177 31.6
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 2.8e-10 71.6 272 27.9
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 3.6e-10 71.2 494 25.1
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.4e-09 69.3 375 25.9
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 1.8e-09 68.9 519 24.5
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 3.1e-09 68.2 530 24.0
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.1e-09 68.2 505 23.2
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 4.0e-09 67.8 583 22.0
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 5.2e-09 67.4 520 24.6
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 5.2e-09 67.4 520 24.6
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 1.2e-08 66.2 484 22.7
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.5e-08 65.9 520 24.2
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 3.4e-08 64.7 370 24.3
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 4.4e-08 64.3 48 60.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 9.9e-08 63.2 472 24.6
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 9.9e-08 63.2 472 24.6
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 9.9e-08 63.2 472 24.6
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 9.9e-08 63.2 518 22.6
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.7e-07 62.4 526 23.8
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 2.9e-07 61.6 530 24.7
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.9e-07 61.6 495 25.1
CDE05G2697 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 4.9e-07 60.8 523 24.3
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 8.4e-07 60.1 495 23.8
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.1e-06 59.7 628 22.9
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 3.2e-06 58.2 512 23.6
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 7.1e-06 57.0 476 21.8


User provided reference genes

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