Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30454 Davidia involucrata HOM05D000454 ORTHO05D002637 9.6e-181 636.7 325 100.0
Dinv37996 Davidia involucrata HOM05D000454 ORTHO05D002637 6.0e-42 175.6 380 35.0
Actinidia39143 Actinidia chinensis HOM05D000454 ORTHO05D002637 6.3e-39 165.6 411 34.1
GSVIVG01017031001 Vitis vinifera HOM05D000454 ORTHO05D002637 3.8e-36 156.4 370 34.1
CiPaw.01G233300 Carya illinoinensis HOM05D000454 ORTHO05D002637 5.5e-35 152.5 367 33.0
Potri.001G187600 Populus trichocarpa HOM05D000454 ORTHO05D002637 1.3e-31 141.4 385 34.0
arahy.Tifrunner.gnm1.ann1.2M4JN6 Arachis hypogaea HOM05D000454 ORTHO05D002637 2.2e-31 140.6 382 32.5
Cfa012706 Carpinus fangiana HOM05D000454 ORTHO05D002637 4.8e-31 139.4 368 31.8
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 4.8e-31 139.4 400 30.5
CiPaw.01G233400 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.8e-30 137.5 365 30.7
Thecc.06G096900 Theobroma cacao HOM05D000454 ORTHO05D002637 2.4e-30 137.1 471 29.3
Haze_07928 Corylus avellana HOM05D000454 ORTHO05D002637 1.5e-29 134.4 362 31.2
Ciclev10025077m.g Citrus clementina HOM05D000454 ORTHO05D002637 2.0e-29 134.0 388 30.7
Medtr2g101320 Medicago truncatula HOM05D000454 ORTHO05D002637 1.0e-28 131.7 375 30.9
arahy.Tifrunner.gnm1.ann1.VK618R Arachis hypogaea HOM05D000454 ORTHO05D002637 3.8e-28 129.8 381 30.4
Glyma.15G018600 Glycine max HOM05D000454 ORTHO05D002637 3.8e-28 129.8 379 28.5
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 5.0e-28 129.4 330 32.4
QL05p020689 Quercus lobata HOM05D000454 ORTHO05D002637 1.1e-27 128.3 382 30.6
Hma1.2p1_1056F.1_g252690 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 1.9e-27 127.5 296 32.4
QL05p020802 Quercus lobata HOM05D000454 ORTHO05D002637 2.5e-27 127.1 380 29.7
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 4.2e-27 126.3 376 30.1
RcHm_v2.0_Chr2g0139761 Rosa chinensis HOM05D000454 ORTHO05D002637 4.2e-27 126.3 398 29.4
Prupe.3G062300 Prunus persica HOM05D000454 ORTHO05D002637 7.2e-27 125.6 409 28.1
QL05p020655 Quercus lobata HOM05D000454 ORTHO05D002637 9.4e-27 125.2 355 30.4
Haze_07930 Corylus avellana HOM05D000454 ORTHO05D002637 1.6e-26 124.4 355 31.3
Prupe.3G065300 Prunus persica HOM05D000454 ORTHO05D002637 3.6e-26 123.2 409 27.9
Medtr2g101310 Medicago truncatula HOM05D000454 ORTHO05D002637 4.6e-26 122.9 376 31.4
Prupe.3G062400 Prunus persica HOM05D000454 ORTHO05D002637 2.3e-25 120.6 387 30.5
Lj3g0015079 Lotus japonicus HOM05D000454 ORTHO05D002637 3.9e-25 119.8 379 28.2
COL.COLO4_30480 Corchorus olitorius HOM05D000454 ORTHO05D002637 1.1e-24 118.2 461 26.5
Hma1.2p1_0659F.1_g197390 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 2.0e-24 117.5 337 31.2
Sed0028147 Sechium edule HOM05D000454 ORTHO05D002637 2.6e-24 117.1 400 30.0
MD17G1186800 Malus domestica HOM05D000454 ORTHO05D002637 5.7e-24 115.9 363 29.8
FvH4_6g32123 Fragaria vesca HOM05D000454 ORTHO05D002637 9.7e-24 115.2 418 30.9
FAN14G2323 Fragaria x ananassa HOM05D000454 ORTHO05D002637 9.7e-24 115.2 418 30.9
Prupe.3G061900 Prunus persica HOM05D000454 ORTHO05D002637 1.3e-23 114.8 380 29.2
FvH4_6g32121 Fragaria vesca HOM05D000454 ORTHO05D002637 2.2e-23 114.0 367 28.1
QL05p020680 Quercus lobata HOM05D000454 ORTHO05D002637 2.2e-23 114.0 367 27.5
MD17G1187000 Malus domestica HOM05D000454 ORTHO05D002637 2.8e-23 113.6 405 26.9
Cfa012703 Carpinus fangiana HOM05D000454 ORTHO05D002637 4.8e-23 112.8 331 31.4
TWI12G0592 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 4.8e-23 112.8 254 34.3
FAN14G5147 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.4e-22 111.3 397 28.0
FAN14G0896 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.8e-22 110.9 341 27.6
FvH4_6g32091 Fragaria vesca HOM05D000454 ORTHO05D002637 2.4e-22 110.5 397 28.0
FAN09G2279 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.4e-22 110.5 367 28.1
Prupe.3G061800 Prunus persica HOM05D000454 ORTHO05D002637 3.1e-22 110.2 325 29.8
RcHm_v2.0_Chr2g0139911 Rosa chinensis HOM05D000454 ORTHO05D002637 3.1e-22 110.2 371 27.2
COL.COLO4_30481 Corchorus olitorius HOM05D000454 ORTHO05D002637 4.1e-22 109.8 368 28.3
Sed0022178 Sechium edule HOM05D000454 ORTHO05D002637 9.1e-22 108.6 372 28.0
PGR102G3036 Punica granatum HOM05D000454 ORTHO05D002637 2.6e-21 107.1 373 29.2
RcHm_v2.0_Chr1g0353591 Rosa chinensis HOM05D000454 ORTHO05D002637 2.6e-21 107.1 424 27.1
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 3.4e-21 106.7 370 28.9
Cfa003673 Carpinus fangiana HOM05D000454 ORTHO05D002637 4.5e-21 106.3 367 28.1
CiPaw.01G233200 Carya illinoinensis HOM05D000454 ORTHO05D002637 4.5e-21 106.3 364 25.8
FAN14G0706 Fragaria x ananassa HOM05D000454 ORTHO05D002637 7.7e-21 105.5 435 26.7
ClCG09G001750 Citrullus lanatus HOM05D000454 ORTHO05D002637 1.0e-20 105.1 380 28.7
Sed0002239 Sechium edule HOM05D000454 ORTHO05D002637 1.0e-20 105.1 375 28.0
FvH4_6g32100 Fragaria vesca HOM05D000454 ORTHO05D002637 1.3e-20 104.8 440 26.6
Haze_15818 Corylus avellana HOM05D000454 ORTHO05D002637 3.8e-20 103.2 362 27.9
RcHm_v2.0_Chr2g0139771 Rosa chinensis HOM05D000454 ORTHO05D002637 3.8e-20 103.2 434 27.0
COL.COLO4_30483 Corchorus olitorius HOM05D000454 ORTHO05D002637 8.5e-20 102.1 453 26.5
Manes.04G132202 Manihot esculenta HOM05D000454 ORTHO05D002637 2.5e-19 100.5 415 27.0
Psat1g005560 Pisum sativum HOM05D000454 ORTHO05D002637 3.2e-19 100.1 206 37.4
RcHm_v2.0_Chr2g0140001 Rosa chinensis HOM05D000454 ORTHO05D002637 5.5e-19 99.4 403 26.1
QL05p020666 Quercus lobata HOM05D000454 ORTHO05D002637 2.1e-18 97.4 335 29.3
Thecc.06G097100 Theobroma cacao HOM05D000454 ORTHO05D002637 2.7e-18 97.1 241 32.4
TAR383G0435 Trochodendron aralioides HOM05D000454 ORTHO05D002637 2.7e-18 97.1 368 28.8
FAN05G3697 Fragaria x ananassa HOM05D000454 ORTHO05D002637 3.6e-18 96.7 334 29.3
CsaV3_3G023710 Cucumis sativus L. HOM05D000454 ORTHO05D002637 4.7e-18 96.3 401 27.7
CiPaw.02G147100 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.4e-17 94.7 361 28.5
Psat3g208040 Pisum sativum HOM05D000454 ORTHO05D002637 1.8e-17 94.4 203 35.5
CsaV3_7G033580 Cucumis sativus L. HOM05D000454 ORTHO05D002637 5.2e-17 92.8 381 26.2
Aqoxy7G01501 Aquilegia oxysepala HOM05D000454 ORTHO05D002637 6.7e-17 92.4 365 28.5
MBI18_g43125_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 8.8e-17 92.0 379 26.6
Sc12g0009600 Simmondsia chinensis HOM05D000454 ORTHO05D002637 1.1e-16 91.7 210 37.6
FAN05G3019 Fragaria x ananassa HOM05D000454 ORTHO05D002637 5.7e-16 89.4 244 31.6
Phvul.005G167300 Phaseolus vulgaris HOM05D000454 ORTHO05D002637 4.8e-15 86.3 386 24.4
Nn3g18151 Nelumbo nucifera HOM05D000454 ORTHO05D002637 6.3e-15 85.9 339 26.5
VMungo1080G0542 Vigna mungo HOM05D000454 ORTHO05D002637 2.4e-14 84.0 221 31.7
Sabra18G0042900 Salix brachista HOM05D000454 ORTHO05D002637 7.0e-14 82.4 355 28.5
RcHm_v2.0_Chr2g0140011 Rosa chinensis HOM05D000454 ORTHO05D002637 1.2e-13 81.6 225 34.7
FvH4_6g32122 Fragaria vesca HOM05D000454 ORTHO05D002637 2.0e-13 80.9 321 26.5
Sed0021062 Sechium edule HOM05D000454 ORTHO05D002637 2.0e-13 80.9 199 34.7
HanXRQChr09g0275911 Helianthus annuus HOM05D000454 ORTHO05D002637 2.6e-13 80.5 272 30.1
Manes.11G035400 Manihot esculenta HOM05D000454 ORTHO05D002637 4.5e-13 79.7 373 25.2
Lsat_1_v5_gn_4_101061 Lactuca sativa HOM05D000454 ORTHO05D002637 7.7e-13 79.0 220 30.5
MBI04_g02616_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 1.0e-12 78.6 365 27.4
RcHm_v2.0_Chr2g0139951 Rosa chinensis HOM05D000454 ORTHO05D002637 1.3e-12 78.2 224 34.8
arahy.Tifrunner.gnm1.ann1.3J38IA Arachis hypogaea HOM05D000454 ORTHO05D002637 1.7e-12 77.8 218 29.8
Duzib168G0801 Durio zibethinus HOM05D000454 ORTHO05D002637 1.7e-12 77.8 356 27.8
HanXRQChr09g0275901 Helianthus annuus HOM05D000454 ORTHO05D002637 2.2e-12 77.4 226 30.5
Manes.04G132001 Manihot esculenta HOM05D000454 ORTHO05D002637 6.5e-12 75.9 332 25.0
PSO782G3005 Papaver somniferum HOM05D000454 ORTHO05D002637 6.5e-12 75.9 381 26.5
RcHm_v2.0_Chr2g0139941 Rosa chinensis HOM05D000454 ORTHO05D002637 6.5e-12 75.9 197 33.0
QL05p020728 Quercus lobata HOM05D000454 ORTHO05D002637 8.5e-12 75.5 206 30.6
QL93p0247_0007 Quercus lobata HOM05D000454 ORTHO05D002637 8.5e-12 75.5 206 30.6
Manes.11G035500 Manihot esculenta HOM05D000454 ORTHO05D002637 1.1e-11 75.1 380 24.5
CSS0003218 Camellia sinensis var. sinensis HOM05D000454 ORTHO05D002637 1.5e-11 74.7 356 25.0
ATR0315G145 Amborella trichopoda HOM05D000454 ORTHO05D002637 1.9e-11 74.3 360 22.8
Oeu031552.2 Olea europaea HOM05D000454 ORTHO05D002637 1.9e-11 74.3 360 26.7
PSO566G0187 Papaver somniferum HOM05D000454 ORTHO05D002637 1.9e-11 74.3 381 26.2
Nn3g18158 Nelumbo nucifera HOM05D000454 ORTHO05D002637 2.5e-11 73.9 367 24.3
Potri.018G042200 Populus trichocarpa HOM05D000454 ORTHO05D002637 3.2e-11 73.6 216 31.5
Thecc.09G043600 Theobroma cacao HOM05D000454 ORTHO05D002637 3.2e-11 73.6 359 24.8
AT5G54710 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 5.5e-11 72.8 344 24.1
QL05p020750 Quercus lobata HOM05D000454 ORTHO05D002637 7.2e-11 72.4 164 39.0
RcHm_v2.0_Chr6g0309561 Rosa chinensis HOM05D000454 ORTHO05D002637 1.6e-10 71.2 163 31.3
Lj8C577G8 Lonicera japonica HOM05D000454 ORTHO05D002637 2.1e-10 70.9 209 29.7
DCAR_007717 Daucus carota HOM05D000454 ORTHO05D002637 2.7e-10 70.5 385 25.2
Atru.chr7.2113 Acer truncatum HOM05D000454 ORTHO05D002637 6.1e-10 69.3 213 27.7
Dinv14254 Davidia involucrata HOM05D000454 ORTHO05D002637 8.0e-10 68.9 213 30.5
COL.COLO4_18654 Corchorus olitorius HOM05D000454 ORTHO05D002637 1.0e-09 68.6 357 24.9
MBI04_g02615_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 1.0e-09 68.6 364 26.1
Lj8C586G6 Lonicera japonica HOM05D000454 ORTHO05D002637 1.8e-09 67.8 208 29.3
arahy.Tifrunner.gnm1.ann1.CL84N0 Arachis hypogaea HOM05D000454 ORTHO05D002637 2.3e-09 67.4 157 31.8
Atru.chr7.2112 Acer truncatum HOM05D000454 ORTHO05D002637 3.0e-09 67.0 373 24.1
Manes.16G072800 Manihot esculenta HOM05D000454 ORTHO05D002637 3.0e-09 67.0 212 32.1
TWI34G0381 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 4.0e-09 66.6 216 30.1
Ciclev10007796m.g Citrus clementina HOM05D000454 ORTHO05D002637 5.2e-09 66.2 205 28.8
BcaC02g08539 Brassica carinata HOM05D000454 ORTHO05D002637 6.7e-09 65.9 365 24.1
C04p53190 Brassica napus HOM05D000454 ORTHO05D002637 6.7e-09 65.9 365 24.1
Cpa.g.sc56.53 Carica papaya HOM05D000454 ORTHO05D002637 6.7e-09 65.9 206 29.1
BolC4t26875H Brassica oleracea HOM05D000454 ORTHO05D002637 8.8e-09 65.5 365 24.1
Oeu012195.1 Olea europaea HOM05D000454 ORTHO05D002637 8.8e-09 65.5 354 25.7
Nitab4.5_0000151g0410 Nicotiana tabacum HOM05D000454 ORTHO05D002637 1.2e-08 65.1 379 23.2
ATR1149G130 Amborella trichopoda HOM05D000454 ORTHO05D002637 1.5e-08 64.7 203 31.5
AT5G50140 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 1.5e-08 64.7 340 24.1
ECA248G1005 Erigeron canadensis HOM05D000454 ORTHO05D002637 1.5e-08 64.7 356 23.9
Atru.chr7.2100 Acer truncatum HOM05D000454 ORTHO05D002637 2.0e-08 64.3 373 23.9
Ciclev10027021m.g Citrus clementina HOM05D000454 ORTHO05D002637 2.6e-08 63.9 349 24.9
Lj8C577G4 Lonicera japonica HOM05D000454 ORTHO05D002637 2.6e-08 63.9 355 24.5
MELO3C024269.2 Cucumis melo HOM05D000454 ORTHO05D002637 5.7e-08 62.8 328 25.0
AT5G54700 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 7.5e-08 62.4 166 31.3
Cpa.g.sc7.266 Carica papaya HOM05D000454 ORTHO05D002637 7.5e-08 62.4 382 24.9
Lj8A587G30 Lonicera japonica HOM05D000454 ORTHO05D002637 7.5e-08 62.4 173 28.3
Nitab4.5_0000837g0120 Nicotiana tabacum HOM05D000454 ORTHO05D002637 7.5e-08 62.4 385 23.4
CARHR268010 Cardamine hirsuta HOM05D000454 ORTHO05D002637 1.3e-07 61.6 331 23.3
Atru.chr1.3491 Acer truncatum HOM05D000454 ORTHO05D002637 1.7e-07 61.2 120 37.5
PGSC0003DMG400012067 Solanum tuberosum HOM05D000454 ORTHO05D002637 4.8e-07 59.7 220 27.3
CARHR268030 Cardamine hirsuta HOM05D000454 ORTHO05D002637 6.3e-07 59.3 203 23.6
Sopen08g020730 Solanum pennellii HOM05D000454 ORTHO05D002637 8.2e-07 58.9 218 29.4
Solyc08g066770.3 Solanum lycopersicum HOM05D000454 ORTHO05D002637 1.1e-06 58.5 218 28.0
Sopen08g020740 Solanum pennellii HOM05D000454 ORTHO05D002637 1.1e-06 58.5 218 28.0
ClCG07G013260 Citrullus lanatus HOM05D000454 ORTHO05D002637 1.8e-06 57.8 297 26.3
AL1G48550 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 3.1e-06 57.0 167 28.7
Lsat_1_v5_gn_1_47140 Lactuca sativa HOM05D000454 ORTHO05D002637 3.1e-06 57.0 376 23.7
TPR.G7279 Trifolium pratense HOM05D000454 ORTHO05D002637 4.1e-06 56.6 96 34.4
CARHR010460 Cardamine hirsuta HOM05D000454 ORTHO05D002637 5.3e-06 56.2 61 49.2
Peaxi162Scf00161g00126 Petunia axillaris HOM05D000454 ORTHO05D002637 5.3e-06 56.2 386 24.6
Carub.0001s3214 Capsella rubella HOM05D000454 ORTHO05D002637 7.0e-06 55.8 202 25.7
Manes.04G132102 Manihot esculenta HOM05D000454 ORTHO05D002637 7.0e-06 55.8 55 45.5
RcHm_v2.0_Chr2g0139991 Rosa chinensis HOM05D000454 ORTHO05D002637 7.0e-06 55.8 96 35.4
HanXRQChr11g0352041 Helianthus annuus HOM05D000454 ORTHO05D002637 9.1e-06 55.5 83 45.8


User provided reference genes

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