Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 4.9e-114 414.5 205 100.0
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 3.4e-43 179.1 119 83.2
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 7.9e-40 167.9 115 76.5
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 1.4e-36 157.1 119 70.6
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 4.5e-35 152.1 118 65.3
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.2e-34 149.8 120 70.0
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 2.2e-34 149.8 120 70.0
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 5.0e-34 148.7 119 66.4
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 5.0e-34 148.7 116 69.8
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 3.2e-33 146.0 120 65.8
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 4.2e-33 145.6 115 70.4
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 3.6e-32 142.5 125 66.4
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 6.1e-32 141.7 123 69.1
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 1.0e-31 141.0 120 70.0
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 8.8e-31 137.9 125 56.0
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 3.3e-30 136.0 116 64.7
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 3.1e-28 129.4 126 61.9
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 9.1e-28 127.9 118 62.7
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 1.2e-27 127.5 116 61.2
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 2.7e-27 126.3 126 58.7
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 3.5e-27 125.9 100 71.0
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 7.7e-27 124.8 120 62.5
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 3.8e-26 122.5 114 62.3
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 3.8e-26 122.5 108 63.9
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 6.5e-26 121.7 100 69.0
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 1.5e-25 120.6 108 63.0
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 1.9e-25 120.2 116 59.5
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 2.5e-25 119.8 119 60.5
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 2.5e-25 119.8 118 55.9
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 3.2e-25 119.4 114 56.1
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 5.5e-25 118.6 121 56.2
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 7.2e-25 118.2 112 59.8
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 7.2e-25 118.2 128 56.2
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 7.2e-25 118.2 119 59.7
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 7.2e-25 118.2 119 59.7
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 9.4e-25 117.9 103 67.0
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 1.2e-24 117.5 120 55.8
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 2.7e-24 116.3 100 65.0
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 4.7e-24 115.5 116 57.8
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 6.1e-24 115.2 118 56.8
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 6.1e-24 115.2 102 59.8
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 1.8e-23 113.6 108 60.2
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 3.0e-23 112.8 111 55.0
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 3.0e-23 112.8 116 54.3
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 4.0e-23 112.5 114 53.5
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 7.5e-22 108.2 120 49.2
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 9.8e-22 107.8 128 50.0
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 9.8e-22 107.8 102 56.9
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 1.3e-21 107.5 108 51.9
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 1.3e-21 107.5 114 52.6
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 1.7e-21 107.1 102 58.8
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 2.2e-21 106.7 112 51.8
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 4.8e-21 105.5 109 56.0
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 4.8e-21 105.5 109 56.0
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 4.8e-21 105.5 113 51.3
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.1e-20 104.4 103 60.2
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 7.0e-20 101.7 73 71.2
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 9.1e-20 101.3 123 49.6
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 1.2e-19 100.9 105 58.1
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.6e-19 100.5 96 61.5
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 1.6e-19 100.5 138 43.5
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.0e-19 100.1 114 50.0
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 2.0e-19 100.1 106 51.9
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 2.0e-19 100.1 111 55.9
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 3.5e-19 99.4 91 56.0
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 5.9e-19 98.6 72 68.1
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 5.9e-19 98.6 106 57.5
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 2.3e-18 96.7 103 53.4
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 2.3e-18 96.7 119 50.4
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 2.9e-18 96.3 119 49.6
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 3.8e-18 95.9 72 66.7
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 8.6e-18 94.7 73 67.1
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 8.6e-18 94.7 73 67.1
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 1.1e-17 94.4 82 59.8
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.9e-17 93.6 125 45.6
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 1.9e-17 93.6 73 64.4
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 2.5e-17 93.2 135 45.2
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 3.2e-17 92.8 105 53.3
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 3.2e-17 92.8 102 53.9
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 4.2e-17 92.4 72 66.7
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 2.1e-16 90.1 89 58.4
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 1.8e-15 87.0 125 46.4
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 3.0e-15 86.3 106 49.1
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 1.2e-14 84.3 112 46.4
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 1.2e-14 84.3 124 44.4
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 2.0e-14 83.6 70 64.3
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 2.6e-14 83.2 109 49.5
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 7.5e-14 81.6 164 36.0
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 9.8e-14 81.3 125 42.4
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 2.8e-13 79.7 50 82.0
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 4.9e-13 79.0 120 40.8
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 8.3e-13 78.2 102 45.1
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 4.1e-12 75.9 89 48.3
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 5.4e-12 75.5 85 49.4
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.0e-10 71.2 138 37.0
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 1.0e-10 71.2 120 38.3
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 1.7e-10 70.5 96 39.6
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.7e-10 70.5 96 39.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.7e-10 70.5 96 39.6
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.9e-10 69.7 96 40.6
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 3.8e-10 69.3 81 44.4
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 3.8e-10 69.3 98 40.8
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 6.6e-10 68.6 96 38.5
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.1e-09 67.8 127 29.9
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 1.1e-09 67.8 96 39.6
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.5e-09 67.4 96 38.5
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 2.5e-09 66.6 95 38.9
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 4.3e-09 65.9 96 38.5
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 7.3e-09 65.1 96 37.5
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 1.2e-08 64.3 96 38.5
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.2e-08 64.3 102 39.2
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 1.6e-08 63.9 96 37.5
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 1.6e-08 63.9 96 37.5
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.6e-08 63.9 96 37.5
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 1.6e-08 63.9 96 37.5
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 8.0e-08 61.6 118 34.7
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 8.0e-08 61.6 110 38.2
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 4.0e-07 59.3 73 45.2
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 4.0e-07 59.3 94 37.2
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 4.0e-07 59.3 72 43.1
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.0e-06 57.0 86 38.4
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 2.0e-06 57.0 118 45.8
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 4.4e-06 55.8 72 40.3
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 9.8e-06 54.7 56 46.4


User provided reference genes

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