Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 1.1e-162 576.6 296 100.0
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 2.8e-70 269.6 319 56.4
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.4e-69 267.3 318 55.7
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 5.3e-69 265.4 301 55.5
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 1.3e-67 260.8 298 54.7
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 1.9e-63 246.9 282 55.3
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 4.6e-57 225.7 306 48.7
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 7.4e-55 218.4 303 49.2
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 5.3e-53 212.2 310 46.1
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 4.6e-49 199.1 270 48.1
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 6.1e-49 198.7 301 45.2
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.4e-48 197.6 321 44.9
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.9e-48 196.1 321 44.5
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 5.1e-48 195.7 275 45.8
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 2.8e-46 189.9 304 45.7
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 1.8e-45 187.2 309 42.1
Sabra01G0150900 Salix brachista HOM05D008208 ORTHO05D010143 7.7e-44 181.8 300 43.3
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.9e-42 177.2 317 39.7
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 3.2e-42 176.4 300 43.3
Ciclev10025127m.g Citrus clementina HOM05D008208 ORTHO05D010143 4.4e-39 166.0 288 42.4
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 1.4e-37 161.0 294 42.9
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 8.5e-35 151.8 292 42.1
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 2.5e-34 150.2 292 42.5
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 8.0e-33 145.2 247 46.2
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 1.4e-32 144.4 312 36.5
CiPaw.02G145300 Carya illinoinensis HOM05D008208 ORTHO05D010143 1.4e-32 144.4 221 46.2
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.4e-32 144.4 269 41.3
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 1.8e-32 144.1 276 40.6
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 2.0e-31 140.6 276 39.5
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 2.6e-31 140.2 276 39.9
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 1.7e-30 137.5 281 38.8
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 2.8e-30 136.7 322 37.0
Potri.001G190601 Populus trichocarpa HOM05D008208 ORTHO05D010143 1.4e-29 134.4 265 38.9
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 7.0e-29 132.1 358 35.2
Thecc.06G101100 Theobroma cacao HOM05D008208 ORTHO05D010143 1.2e-28 131.3 295 37.6
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 4.5e-28 129.4 283 37.5
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 8.5e-27 125.2 370 33.2
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 3.2e-26 123.2 233 42.9
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 5.5e-26 122.5 218 40.8
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 5.5e-26 122.5 240 40.8
DCAR_023083 Daucus carota HOM05D008208 ORTHO05D010143 7.2e-26 122.1 245 42.0
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 1.6e-25 120.9 248 39.5
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.6e-25 120.9 262 38.5
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 2.7e-25 120.2 302 35.8
HanXRQChr09g0275691 Helianthus annuus HOM05D008208 ORTHO05D010143 3.6e-25 119.8 279 35.5
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 2.3e-24 117.1 283 33.9
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 2.8e-22 110.2 301 35.2
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 2.8e-22 110.2 272 36.0
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 1.1e-21 108.2 274 35.0
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 3.1e-21 106.7 192 43.8
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 9.1e-21 105.1 252 36.1
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 2.7e-20 103.6 321 34.3
SGA_v2.0_scaffold265G46060 Striga asiatica HOM05D008208 ORTHO05D010143 2.3e-19 100.5 312 33.3
ClCG07G013360 Citrullus lanatus HOM05D026900 ORTHO05D010143 9.5e-18 95.1 195 40.0
Lsat_1_v5_gn_5_134320 Lactuca sativa HOM05D008208 ORTHO05D010143 8.0e-17 92.0 273 32.6
SalBow2G3317 Salvia bowleyana HOM05D008208 ORTHO05D010143 1.8e-16 90.9 318 28.9
CsaV3_3G023500 Cucumis sativus L. HOM05D026900 ORTHO05D010143 2.3e-16 90.5 178 38.2
ECA232G2142 Erigeron canadensis HOM05D008208 ORTHO05D010143 3.0e-16 90.1 255 32.2
MELO3C013005.2 Cucumis melo HOM05D026900 ORTHO05D010143 5.2e-16 89.4 212 35.8
Migut.I00959 Erythranthe guttata HOM05D008208 ORTHO05D010143 1.5e-15 87.8 275 32.7
Aqoxy1G02129 Aquilegia oxysepala HOM05D057169 ORTHO05D010143 2.6e-15 87.0 266 34.2
EL10Ac9g21199 Beta vulgaris HOM05D008208 ORTHO05D010143 2.8e-14 83.6 258 34.1
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 2.8e-14 83.6 179 37.4
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 8.3e-14 82.0 259 32.4
Aqoxy1G02121 Aquilegia oxysepala HOM05D057169 ORTHO05D010143 2.4e-13 80.5 249 34.5
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 5.4e-13 79.3 280 32.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.6e-12 77.8 224 33.9
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 5.9e-12 75.9 289 31.5
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 7.8e-12 75.5 186 35.5
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 7.8e-12 75.5 280 31.8
Eucgr.F03082 Eucalyptus grandis HOM05D008208 ORTHO05D010143 1.3e-11 74.7 274 31.8
Sed0025504 Sechium edule HOM05D026900 ORTHO05D010143 2.3e-11 73.9 264 31.1
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 3.8e-11 73.2 204 35.3
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 3.8e-11 73.2 236 31.4
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 8.6e-11 72.0 205 34.1
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.1e-10 71.6 247 32.4
ECA234G0784 Erigeron canadensis HOM05D008208 ORTHO05D010143 1.1e-10 71.6 144 36.8
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.5e-10 71.2 316 31.0
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.5e-10 71.2 280 31.1
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.9e-10 70.9 228 32.9
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.9e-10 70.9 242 31.8
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.5e-10 70.5 228 32.9
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.3e-10 70.1 227 31.7
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 4.3e-10 69.7 253 28.5
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 4.3e-10 69.7 227 34.4
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.3e-10 68.9 228 31.6
PSO210G4238 Papaver somniferum HOM05D029104 ORTHO05D010143 7.3e-10 68.9 309 31.1
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 7.3e-10 68.9 247 29.6
unitig_37.g12263 Utricularia gibba HOM05D008208 ORTHO05D010143 7.3e-10 68.9 228 29.4
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 9.5e-10 68.6 290 27.9
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-09 68.2 251 28.3
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.6e-09 67.8 284 28.2
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.6e-09 67.8 284 28.5
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 1.6e-09 67.8 210 31.0
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.8e-09 67.0 285 28.4
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 2.8e-09 67.0 247 30.0
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 2.8e-09 67.0 251 31.1
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.1e-09 65.9 229 31.4
CDE05G0720 Ceratophyllum demersum HOM05D008208 ORTHO05D010143 1.4e-08 64.7 120 36.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.4e-08 64.7 274 28.5
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 1.8e-08 64.3 169 34.9
PGR102G1678 Punica granatum HOM05D008208 ORTHO05D010143 2.3e-08 63.9 63 52.4
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 2.3e-08 63.9 225 29.8
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 2.3e-08 63.9 75 45.3
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 4.0e-08 63.2 273 28.6
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.2e-08 62.8 252 29.8
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 5.2e-08 62.8 198 29.8
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 6.8e-08 62.4 249 28.5
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 6.8e-08 62.4 219 28.8
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 6.8e-08 62.4 228 30.3
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 6.8e-08 62.4 245 29.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 6.8e-08 62.4 273 29.7
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 8.9e-08 62.0 220 31.4
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.2e-07 61.6 227 33.5
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.2e-07 61.6 228 28.5
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.2e-07 61.6 202 34.7
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.5e-07 61.2 231 30.3
CDE02G2770 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 2.0e-07 60.8 205 33.2
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 2.0e-07 60.8 205 28.8
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.0e-07 60.8 203 32.5
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.0e-07 60.8 203 32.5
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 2.0e-07 60.8 245 29.4
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 3.4e-07 60.1 285 30.5
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 3.4e-07 60.1 285 30.5
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 4.4e-07 59.7 197 28.4
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 5.7e-07 59.3 190 30.5
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 5.7e-07 59.3 233 28.8
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 5.7e-07 59.3 206 32.5
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 7.5e-07 58.9 228 29.4
PSO210G1134 Papaver somniferum HOM05D029104 ORTHO05D010143 7.5e-07 58.9 316 29.4
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.3e-06 58.2 275 26.5
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.7e-06 57.8 225 28.4
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 2.9e-06 57.0 231 32.5
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.7e-06 56.6 269 28.3
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 3.7e-06 56.6 270 29.6
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 4.9e-06 56.2 206 30.6
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 4.9e-06 56.2 206 30.6
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 4.9e-06 56.2 206 30.6
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 4.9e-06 56.2 218 29.4
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 4.9e-06 56.2 89 39.3
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 4.9e-06 56.2 250 28.8
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 6.4e-06 55.8 230 30.4
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 6.4e-06 55.8 91 40.7
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 6.4e-06 55.8 244 28.3
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 8.3e-06 55.5 281 28.1
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 8.3e-06 55.5 235 29.4
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 8.3e-06 55.5 76 43.4


User provided reference genes

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