Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 2.0e-133 479.2 259 100.0
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 3.2e-110 402.1 252 86.5
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.6e-109 399.8 249 86.3
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.1e-107 393.7 254 81.9
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 2.5e-107 392.5 253 86.6
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 7.3e-107 391.0 254 82.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 9.5e-107 390.6 252 83.3
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.2e-106 390.2 257 82.1
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.1e-105 387.1 252 82.5
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 5.2e-105 384.8 246 83.3
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 5.2e-105 384.8 252 81.0
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 6.8e-105 384.4 252 80.6
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.0e-104 382.9 251 81.3
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 2.6e-104 382.5 253 81.4
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 2.6e-104 382.5 252 80.2
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.8e-104 381.3 251 81.7
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 5.8e-104 381.3 262 80.5
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.3e-103 380.2 251 81.3
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.7e-103 379.8 254 80.3
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.9e-103 378.3 252 80.6
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 9.2e-102 374.0 254 78.3
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.6e-101 373.2 252 78.2
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.1e-101 372.9 254 78.3
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 3.5e-101 372.1 252 80.2
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.0e-100 370.5 254 78.3
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 2.3e-100 369.4 254 79.1
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 9.5e-99 364.0 257 76.7
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.2e-98 363.6 243 82.3
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.1e-98 362.8 255 77.3
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 4.7e-98 361.7 254 77.2
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 6.2e-98 361.3 251 77.3
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.1e-97 360.5 238 81.1
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.1e-97 360.5 248 79.4
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-97 360.1 244 77.5
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.8e-97 359.8 253 78.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 2.0e-96 356.3 252 76.6
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.6e-96 355.9 243 79.8
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.3e-95 353.6 255 76.1
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.3e-95 353.6 252 76.2
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.7e-95 353.2 251 75.3
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 2.9e-95 352.4 253 76.7
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 6.4e-95 351.3 252 77.4
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.9e-94 349.7 253 74.7
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.4e-94 349.4 245 74.3
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 5.4e-94 348.2 246 76.0
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.1e-93 346.3 254 76.4
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 2.1e-93 346.3 253 77.5
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.5e-93 345.5 254 75.6
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 4.6e-93 345.1 254 72.8
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 3.3e-91 339.0 249 75.5
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.3e-91 339.0 255 74.9
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 3.3e-91 339.0 252 73.4
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 4.3e-91 338.6 253 73.5
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 5.6e-91 338.2 253 73.9
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 7.3e-91 337.8 250 77.2
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 3.6e-90 335.5 252 73.0
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.1e-89 334.0 253 72.3
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.4e-89 333.6 252 73.4
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.4e-89 332.8 254 74.4
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 3.1e-89 332.4 248 71.4
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 4.0e-89 332.0 348 57.5
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 5.3e-89 331.6 251 72.9
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 9.0e-89 330.9 252 72.2
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 9.0e-89 330.9 254 74.0
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 9.0e-89 330.9 252 69.4
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.6e-88 329.3 249 74.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 3.4e-88 328.9 251 71.7
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 4.4e-88 328.6 255 71.8
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 5.8e-88 328.2 215 74.0
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 5.8e-88 328.2 251 72.5
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 5.8e-88 328.2 278 69.8
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 9.9e-88 327.4 252 69.0
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 6.4e-87 324.7 255 68.2
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.1e-86 323.9 249 71.9
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 2.4e-86 322.8 271 69.0
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 2.4e-86 322.8 253 71.9
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.4e-86 322.8 252 69.4
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 7.1e-86 321.2 244 73.0
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-85 320.5 246 70.7
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.7e-85 319.3 248 69.0
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 2.7e-85 319.3 249 68.7
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 4.6e-85 318.5 248 68.5
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 6.0e-85 318.2 243 69.5
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 6.0e-85 318.2 193 82.4
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 7.8e-85 317.8 246 69.9
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.7e-84 316.6 257 70.0
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 2.3e-84 316.2 239 70.3
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.5e-83 313.5 248 67.7
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 5.6e-83 311.6 248 69.0
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 9.6e-83 310.8 202 74.8
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.6e-82 310.1 250 68.8
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 4.8e-82 308.5 238 69.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 6.2e-82 308.1 239 69.0
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.4e-81 307.0 239 69.0
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.4e-81 307.0 246 67.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.8e-81 306.6 248 68.5
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.5e-80 303.5 228 71.1
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 4.5e-80 302.0 248 67.3
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 9.9e-80 300.8 262 63.7
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 2.9e-79 299.3 245 66.5
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.4e-78 296.2 335 55.8
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 1.3e-76 290.4 247 65.2
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.8e-76 290.0 250 64.8
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 3.0e-76 289.3 245 65.3
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 5.1e-76 288.5 252 62.3
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 6.7e-76 288.1 294 58.8
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 7.4e-75 284.6 251 66.1
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.6e-74 283.5 254 64.6
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.4e-73 280.4 254 63.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 4.0e-73 278.9 250 64.0
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 9.0e-73 277.7 179 78.2
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 9.9e-72 274.2 245 65.7
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 5.5e-70 268.5 285 56.5
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 9.3e-70 267.7 253 59.7
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.7e-68 261.2 253 58.9
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.1e-67 260.8 224 59.8
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.3e-67 258.8 244 62.3
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.7e-66 255.8 252 57.1
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.5e-64 250.4 148 83.1
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.3e-63 247.3 221 62.0
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 8.7e-60 234.6 248 57.7
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 2.4e-57 226.5 247 55.9
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.7e-55 220.3 222 52.7
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.1e-54 217.6 136 80.1
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.5e-54 216.5 132 78.8
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.7e-50 203.8 172 68.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.2e-50 201.4 140 72.1
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.2e-46 189.5 145 77.2
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 5.1e-44 182.2 256 43.0
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 2.6e-43 179.9 145 64.1
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 3.2e-38 162.9 191 50.8
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 6.7e-36 155.2 228 40.4
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-35 154.5 190 56.8
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.1e-35 154.5 344 40.4
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.2e-32 144.4 247 39.3
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 4.5e-32 142.5 230 39.1
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 4.2e-30 136.0 115 72.2
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.0e-28 129.8 112 67.0
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 4.8e-26 122.5 72 84.7
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.7e-24 116.7 92 63.0
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.9e-22 110.5 58 86.2
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.2e-20 102.4 78 83.3
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 5.2e-20 102.4 79 62.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 5.7e-19 99.0 79 62.0
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 9.2e-09 65.1 164 32.9
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.2e-08 64.7 63 50.8
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.5e-08 62.8 184 29.3
TAR497G0002 Trochodendron aralioides HOM05D005017 ORTHO05D006044 4.5e-08 62.8 31 93.5
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.9e-07 59.7 34 73.5
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.5e-06 57.0 38 68.4
Mapoly0066s0045 Marchantia polymorpha HOM05D025310 ORTHO05D023473 9.5e-06 55.1 145 31.0


User provided reference genes

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