Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30293 Davidia involucrata HOM05D001672 ORTHO05D008153 1.2e-95 353.2 185 100.0
Dinv18689 Davidia involucrata HOM05D001672 ORTHO05D008153 5.8e-82 307.8 180 87.8
Actinidia38144 Actinidia chinensis HOM05D001260 ORTHO05D002424 3.1e-67 258.8 183 73.2
Hma1.2p1_0222F.1_g093440 Hydrangea macrophylla HOM05D001672 ORTHO05D008153 5.3e-67 258.1 184 76.1
CSS0031282 Camellia sinensis var. sinensis HOM05D001672 ORTHO05D008153 3.4e-66 255.4 184 76.1
TAR636G0319 Trochodendron aralioides HOM05D001672 ORTHO05D008153 1.1e-61 240.4 180 71.7
Nn2g15055 Nelumbo nucifera HOM05D001672 ORTHO05D008153 4.0e-59 231.9 181 69.6
GSVIVG01033556001 Vitis vinifera HOM05D001672 ORTHO05D008153 7.6e-58 227.6 180 70.0
PSO339G3968 Papaver somniferum HOM05D001672 ORTHO05D008153 1.2e-55 220.3 189 65.6
Prupe.7G049700 Prunus persica HOM05D001672 ORTHO05D008153 6.0e-55 218.0 190 64.7
PSO384G4779 Papaver somniferum HOM05D001672 ORTHO05D008153 3.9e-54 215.3 189 64.0
PGR142G0049 Punica granatum HOM05D001672 ORTHO05D008153 8.7e-54 214.2 183 66.1
Thecc.05G144700 Theobroma cacao HOM05D001672 ORTHO05D008153 2.5e-53 212.6 183 65.6
Gohir.D13G011600 Gossypium hirsutum HOM05D001672 ORTHO05D008153 2.8e-52 209.1 181 63.5
Duzib093G1214 Durio zibethinus HOM05D001672 ORTHO05D008153 5.3e-51 204.9 180 63.3
CiPaw.09G042600 Carya illinoinensis HOM05D001672 ORTHO05D008153 6.9e-51 204.5 188 61.7
CANSAT80G2358 Cannabis sativa HOM05D001672 ORTHO05D008153 1.2e-50 203.8 190 62.1
Gohir.A13G010900 Gossypium hirsutum HOM05D001672 ORTHO05D008153 1.5e-50 203.4 181 61.3
Sopen10g030450 Solanum pennellii HOM05D001672 ORTHO05D008153 1.5e-50 203.4 185 62.7
Cfa016750 Carpinus fangiana HOM05D001672 ORTHO05D008153 2.0e-50 203.0 183 62.3
COL.COLO4_21292 Corchorus olitorius HOM05D001672 ORTHO05D008153 2.6e-50 202.6 147 74.8
FvH4_4g12020 Fragaria vesca HOM05D001672 ORTHO05D008153 3.4e-50 202.2 188 61.2
CANSAT80G1353 Cannabis sativa HOM05D001672 ORTHO05D008153 4.5e-50 201.8 190 61.6
FAN07G0795 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.5e-50 201.8 188 61.2
FAN12G1117 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.5e-50 201.8 188 61.2
FAN12G1718 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.5e-50 201.8 188 61.2
Ciclev10005039m.g Citrus clementina HOM05D001672 ORTHO05D008153 5.9e-50 201.4 183 63.9
Solyc10g079840.2 Solanum lycopersicum HOM05D001672 ORTHO05D008153 5.9e-50 201.4 185 62.2
FAN17G0860 Fragaria x ananassa HOM05D001672 ORTHO05D008153 1.3e-49 200.3 188 60.6
RcHm_v2.0_Chr4g0409641 Rosa chinensis HOM05D001672 ORTHO05D008153 1.3e-49 200.3 187 59.9
FAN22G1650 Fragaria x ananassa HOM05D001672 ORTHO05D008153 1.7e-49 199.9 188 60.6
Potri.006G045200 Populus trichocarpa HOM05D001672 ORTHO05D008153 2.9e-49 199.1 145 73.1
Sabra06G0031100 Salix brachista HOM05D001260 ORTHO05D002424 3.8e-49 198.7 146 71.9
CDE08G1323 Ceratophyllum demersum HOM05D001672 ORTHO05D008153 6.5e-49 198.0 189 57.7
Manes.09G016710 Manihot esculenta HOM05D001672 ORTHO05D008153 8.5e-49 197.6 141 73.8
Glyma.03G008400 Glycine max HOM05D001672 ORTHO05D008153 1.1e-48 197.2 188 58.5
Migut.J01698 Erythranthe guttata HOM05D001672 ORTHO05D008153 1.9e-48 196.4 144 72.2
Glyma.10G105300 Glycine max HOM05D001672 ORTHO05D008153 2.5e-48 196.1 188 58.5
Nitab4.5_0000562g0010 Nicotiana tabacum HOM05D001672 ORTHO05D008153 4.2e-48 195.3 183 60.1
Lsat_1_v5_gn_5_6501 Lactuca sativa HOM05D001672 ORTHO05D008153 7.2e-48 194.5 157 66.9
Lsat_1_v5_gn_8_83140 Lactuca sativa HOM05D001672 ORTHO05D008153 7.2e-48 194.5 157 66.9
Peaxi162Scf01315g00113 Petunia axillaris HOM05D001672 ORTHO05D008153 9.3e-48 194.1 179 62.6
Hund19122 Selenicereus undatus HOM05D001672 ORTHO05D008153 9.3e-48 194.1 159 62.9
PGSC0003DMG400029846 Solanum tuberosum HOM05D001672 ORTHO05D008153 9.3e-48 194.1 201 57.7
Eucgr.K01580 Eucalyptus grandis HOM05D001672 ORTHO05D008153 1.2e-47 193.7 177 58.2
Cpa.g.sc120.14 Carica papaya HOM05D001672 ORTHO05D008153 2.7e-47 192.6 180 60.6
HanXRQChr06g0176831 Helianthus annuus HOM05D001672 ORTHO05D008153 3.6e-47 192.2 142 71.8
EL10Ac3g07168 Beta vulgaris HOM05D001672 ORTHO05D008153 4.6e-47 191.8 142 66.2
Cc06_g18400 Coffea canephora HOM05D001672 ORTHO05D008153 4.6e-47 191.8 179 60.9
Ca_11913_v3 Cicer arietinum L. HOM05D001672 ORTHO05D008153 1.0e-46 190.7 184 57.6
ECA236G2794 Erigeron canadensis HOM05D001672 ORTHO05D008153 1.8e-46 189.9 132 74.2
Nitab4.5_0000677g0050 Nicotiana tabacum HOM05D001672 ORTHO05D008153 3.9e-46 188.7 185 57.8
Lalb_Chr21g0316621 Lupinus albus HOM05D001672 ORTHO05D008153 8.7e-46 187.6 189 54.5
VMungo0720G0829 Vigna mungo HOM05D001672 ORTHO05D008153 1.5e-45 186.8 189 56.6
Lj5g0021823 Lotus japonicus HOM05D001672 ORTHO05D008153 4.3e-45 185.3 187 55.6
Eucgr.F00951 Eucalyptus grandis HOM05D001672 ORTHO05D008153 7.4e-45 184.5 163 59.5
AUR62030395 Chenopodium quinoa HOM05D001672 ORTHO05D008153 9.7e-45 184.1 144 62.5
Carub.0005s2401 Capsella rubella HOM05D001672 ORTHO05D008153 2.8e-44 182.6 140 67.9
Aa31LG10G12100 Aethionema arabicum HOM05D001672 ORTHO05D008153 3.7e-44 182.2 144 66.0
Lj1A1122G39 Lonicera japonica HOM05D001672 ORTHO05D008153 1.1e-43 180.6 125 74.4
Sc19g0008400 Simmondsia chinensis HOM05D001672 ORTHO05D008153 1.1e-43 180.6 146 63.7
AT3G57190 Arabidopsis thaliana HOM05D001672 ORTHO05D008153 1.8e-43 179.9 140 66.4
Rhsim04G0108200 Rhododendron simsii HOM05D001672 ORTHO05D008153 1.8e-43 179.9 122 76.2
Eucgr.F03826 Eucalyptus grandis HOM05D001672 ORTHO05D008153 2.4e-43 179.5 140 65.0
AL5G38680 Arabidopsis lyrata HOM05D001672 ORTHO05D008153 3.1e-43 179.1 140 66.4
arahy.Tifrunner.gnm1.ann1.68Y0RY Arachis hypogaea HOM05D001672 ORTHO05D008153 4.1e-43 178.7 190 53.7
TPR.G19649 Trifolium pratense HOM05D001672 ORTHO05D008153 4.1e-43 178.7 181 54.1
SGA_v2.0_scaffold105G30346 Striga asiatica HOM05D001672 ORTHO05D008153 5.3e-43 178.3 178 53.9
TWI74G0460 Tripterygium wilfordii HOM05D001672 ORTHO05D008153 5.3e-43 178.3 184 54.9
CARHR167390 Cardamine hirsuta HOM05D001672 ORTHO05D008153 6.9e-43 177.9 156 60.3
Thhalv10006006m.g Eutrema salsugineum HOM05D001672 ORTHO05D008153 6.9e-43 177.9 138 67.4
MBI19_g08305_MAGBIO Magnolia biondii HOM05D001672 ORTHO05D008153 6.9e-43 177.9 146 65.8
CAN.G1656.9 Capsicum annuum HOM05D001672 ORTHO05D008153 2.0e-42 176.4 124 75.0
THA.LOC104824425 Tarenaya hassleriana HOM05D001672 ORTHO05D008153 2.6e-42 176.0 144 65.3
DCAR_013618 Daucus carota HOM05D001672 ORTHO05D008153 7.7e-42 174.5 177 56.5
arahy.Tifrunner.gnm1.ann1.MWR02K Arachis hypogaea HOM05D001672 ORTHO05D008153 1.0e-41 174.1 190 53.2
Sp5g05380 Schrenkiella parvula HOM05D001672 ORTHO05D008153 3.8e-41 172.2 141 63.8
Haze_19753 Corylus avellana HOM05D001260 ORTHO05D002424 5.0e-41 171.8 229 49.3
Gorai.013G012700 Gossypium raimondii HOM05D001672 ORTHO05D008153 1.1e-40 170.6 120 73.3
vmacro09041 Vaccinium macrocarpon HOM05D001672 ORTHO05D008153 1.4e-40 170.2 122 72.1
Medtr1g041890 Medicago truncatula HOM05D001672 ORTHO05D008153 1.9e-40 169.9 126 69.0
MSTRG.6399 Avicennia marina HOM05D001672 ORTHO05D008153 2.5e-40 169.5 189 52.4
A09p50130 Brassica napus HOM05D001672 ORTHO05D008153 4.2e-40 168.7 140 63.6
C08p32500 Brassica napus HOM05D001672 ORTHO05D008153 4.2e-40 168.7 140 63.6
BraA09t40464Z Brassica rapa HOM05D001672 ORTHO05D008153 4.2e-40 168.7 140 63.6
Oeu026334.1 Olea europaea HOM05D000056 ORTHO05D000019 6.1e-39 164.9 125 67.2
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.4e-38 163.7 179 55.3
Aqoxy2G00268 Aquilegia oxysepala HOM05D001672 ORTHO05D008153 1.4e-38 163.7 179 55.3
BcaC07g40066 Brassica carinata HOM05D001672 ORTHO05D008153 1.4e-38 163.7 133 65.4
Oeu038963.1 Olea europaea HOM05D001672 ORTHO05D008153 3.9e-38 162.2 131 63.4
ATR0721G134 Amborella trichopoda HOM05D001672 ORTHO05D008153 8.8e-38 161.0 155 55.5
HPP92_001435 Vanilla planifolia HOM05D001672 ORTHO05D008153 8.8e-38 161.0 181 50.3
RcHm_v2.0_Chr2g0168541 Rosa chinensis HOM05D001672 ORTHO05D008153 3.3e-37 159.1 118 68.6
Os05g0375600 Oryza sativa ssp. japonica HOM05D001672 ORTHO05D008153 7.4e-37 157.9 169 53.8
RcHm_v2.0_Chr5g0071051 Rosa chinensis HOM05D001672 ORTHO05D008153 1.3e-36 157.1 121 66.9
Zm00001eb286770 Zea mays HOM05D001672 ORTHO05D008153 6.3e-36 154.8 126 64.3
Phvul.007G249100 Phaseolus vulgaris HOM05D001672 ORTHO05D008153 4.1e-35 152.1 167 52.7
RcHm_v2.0_Chr1g0343471 Rosa chinensis HOM05D001672 ORTHO05D008153 3.4e-34 149.1 110 67.3
Ca_30977_v3 Cicer arietinum L. HOM05D001672 ORTHO05D008153 4.5e-34 148.7 109 69.7
Manes.09G016400 Manihot esculenta HOM05D001672 ORTHO05D008153 1.7e-33 146.7 105 72.4
RcHm_v2.0_Chr7g0240011 Rosa chinensis HOM05D001672 ORTHO05D008153 1.4e-32 143.7 102 69.6
Psat0s1991g0160 Pisum sativum HOM05D001672 ORTHO05D008153 5.5e-32 141.7 109 67.0
Oeu026327.1 Olea europaea HOM05D001672 ORTHO05D008153 1.0e-30 137.5 109 64.2
Aa31LG1G3580 Aethionema arabicum HOM05D001672 ORTHO05D008153 1.2e-23 114.0 88 64.8
HPP92_001437 Vanilla planifolia HOM05D001672 ORTHO05D008153 2.7e-23 112.8 106 57.5
Eucgr.F02187 Eucalyptus grandis HOM05D001672 ORTHO05D008153 3.6e-23 112.5 105 57.1
AUR62041193 Chenopodium quinoa HOM05D001672 ORTHO05D008153 1.8e-22 110.2 101 54.5
RcHm_v2.0_Chr5g0045081 Rosa chinensis HOM05D001672 ORTHO05D008153 9.7e-21 104.4 73 71.2
RcHm_v2.0_Chr6g0273161 Rosa chinensis HOM05D001672 ORTHO05D008153 3.7e-20 102.4 75 72.0
Oeu021184.1 Olea europaea HOM05D001672 ORTHO05D008153 1.6e-18 97.1 122 49.2
Atru.chr1.1245 Acer truncatum HOM05D001672 ORTHO05D008153 4.7e-15 85.5 90 58.9
Oeu029712.1 Olea europaea HOM05D005620 ORTHO05D002193 5.7e-13 78.6 63 65.1
SEGI_18756 Sequoiadendron giganteum HOM05D001672 ORTHO05D008029 7.5e-13 78.2 144 34.7
CDE09G0031 Ceratophyllum demersum HOM05D001672 ORTHO05D008153 2.8e-12 76.3 54 70.4
Potri.008G075800 Populus trichocarpa HOM05D001672 ORTHO05D008029 2.4e-11 73.2 127 37.0
Sabra08G0056400 Salix brachista HOM05D001672 ORTHO05D008029 3.1e-11 72.8 127 36.2
AagrBONN_evm.TU.Sc2ySwM_368.638 Anthoceros agrestis HOM05D001672 ORTHO05D008029 7.0e-11 71.6 127 35.4
Hund21839 Selenicereus undatus HOM05D001672 ORTHO05D008029 1.6e-10 70.5 127 35.4
Thecc.05G187200 Theobroma cacao HOM05D001672 ORTHO05D008029 2.0e-10 70.1 140 30.7
PGR031G1216 Punica granatum HOM05D001672 ORTHO05D008029 2.7e-10 69.7 154 31.8
AUR62025763 Chenopodium quinoa HOM05D001672 ORTHO05D138286 4.5e-10 68.9 60 53.3
VMungo1383G0488 Vigna mungo HOM05D001672 ORTHO05D008029 5.9e-10 68.6 127 33.9
SGA_v2.0_scaffold122G33194 Striga asiatica HOM05D001672 ORTHO05D008029 1.3e-09 67.4 127 33.9
DCAR_030007 Daucus carota HOM05D001672 ORTHO05D008029 1.7e-09 67.0 129 32.6
Os07g0546600 Oryza sativa ssp. japonica HOM05D001672 ORTHO05D008029 2.9e-09 66.2 127 33.9
Duzib177G0269 Durio zibethinus HOM05D001672 ORTHO05D008029 3.8e-09 65.9 175 29.1
ATR0743G112 Amborella trichopoda HOM05D001672 ORTHO05D008029 8.6e-09 64.7 128 30.5
Gohir.D08G247600 Gossypium hirsutum HOM05D001672 ORTHO05D008029 8.6e-09 64.7 149 27.5
Gorai.004G264100 Gossypium raimondii HOM05D001672 ORTHO05D008029 8.6e-09 64.7 149 27.5
Medtr7g080430 Medicago truncatula HOM05D001672 ORTHO05D008029 8.6e-09 64.7 127 32.3
Atru.chr1.1244 Acer truncatum HOM05D001672 ORTHO05D008153 1.1e-08 64.3 41 73.2
Gohir.A08G227200 Gossypium hirsutum HOM05D001672 ORTHO05D008029 1.1e-08 64.3 149 27.5
Manes.12G003100 Manihot esculenta HOM05D001672 ORTHO05D008029 1.1e-08 64.3 127 30.7
TWI36G0167 Tripterygium wilfordii HOM05D001672 ORTHO05D008029 1.1e-08 64.3 160 29.4
TWI36G0981 Tripterygium wilfordii HOM05D001672 ORTHO05D008029 1.1e-08 64.3 160 29.4
MSTRG.8200 Avicennia marina HOM05D001672 ORTHO05D008029 1.5e-08 63.9 169 29.6
SalBow6G6011 Salvia bowleyana HOM05D001672 ORTHO05D008029 1.5e-08 63.9 127 33.1
TPR.G32008 Trifolium pratense HOM05D001672 ORTHO05D008029 1.5e-08 63.9 127 31.5
Duzib106G1257 Durio zibethinus HOM05D001672 ORTHO05D008029 1.9e-08 63.5 143 28.0
Glyma.09G248300 Glycine max HOM05D001672 ORTHO05D008029 1.9e-08 63.5 127 32.3
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 3.2e-08 62.8 127 32.3
CsaV3_1G044280 Cucumis sativus L. HOM05D001672 ORTHO05D008029 3.2e-08 62.8 127 29.9
arahy.Tifrunner.gnm1.ann1.322B5E Arachis hypogaea HOM05D001672 ORTHO05D008029 4.2e-08 62.4 127 31.5
CDE07G1999 Ceratophyllum demersum HOM05D001672 ORTHO05D008029 4.2e-08 62.4 127 33.1
arahy.Tifrunner.gnm1.ann1.5A5R3G Arachis hypogaea HOM05D001672 ORTHO05D008029 5.5e-08 62.0 127 31.5
Phvul.008G052200 Phaseolus vulgaris HOM05D001672 ORTHO05D008029 5.5e-08 62.0 127 30.7
Cc09_g03960 Coffea canephora HOM05D001672 ORTHO05D008029 7.2e-08 61.6 127 33.1
Nn7g37576 Nelumbo nucifera HOM05D001672 ORTHO05D008029 7.2e-08 61.6 127 30.7
TAR362G1091 Trochodendron aralioides HOM05D001672 ORTHO05D008029 7.2e-08 61.6 127 31.5
Cpa.g.sc123.43 Carica papaya HOM05D001672 ORTHO05D008029 9.5e-08 61.2 128 32.0
Cfa006240 Carpinus fangiana HOM05D001672 ORTHO05D008029 9.5e-08 61.2 127 30.7
AUR62006632 Chenopodium quinoa HOM05D001672 ORTHO05D008029 9.5e-08 61.2 127 31.5
Haze_04593 Corylus avellana HOM05D000399 ORTHO05D008029 9.5e-08 61.2 127 31.5
Lalb_Chr19g0127621 Lupinus albus HOM05D001672 ORTHO05D008029 9.5e-08 61.2 180 28.9
Eucgr.B01462 Eucalyptus grandis HOM05D001672 ORTHO05D008029 1.2e-07 60.8 170 27.1
THA.LOC104805706 Tarenaya hassleriana HOM05D001672 ORTHO05D008029 1.2e-07 60.8 139 28.8
GSVIVG01019055001 Vitis vinifera HOM05D001672 ORTHO05D008029 1.2e-07 60.8 127 30.7
Aqoxy2G04124 Aquilegia oxysepala HOM05D001672 ORTHO05D008029 1.6e-07 60.5 153 28.1
CiPaw.07G082900 Carya illinoinensis HOM05D001672 ORTHO05D008029 1.6e-07 60.5 127 31.5
Sed0013113 Sechium edule HOM05D001672 ORTHO05D008029 2.1e-07 60.1 127 30.7
EL10Ac4g10010 Beta vulgaris HOM05D001672 ORTHO05D008029 2.8e-07 59.7 127 31.5
CANSAT54G0429 Cannabis sativa HOM05D001672 ORTHO05D008029 2.8e-07 59.7 155 30.3
AUR62000284 Chenopodium quinoa HOM05D001672 ORTHO05D008029 2.8e-07 59.7 127 30.7
Eucgr.E02486 Eucalyptus grandis HOM05D001672 ORTHO05D008153 3.6e-07 59.3 38 65.8
RcHm_v2.0_Chr3g0447561 Rosa chinensis HOM05D001672 ORTHO05D008029 4.7e-07 58.9 185 28.6
Sc16g0010530 Simmondsia chinensis HOM05D001672 ORTHO05D008029 4.7e-07 58.9 127 31.5
Sopen04g011940 Solanum pennellii HOM05D001672 ORTHO05D008029 4.7e-07 58.9 127 30.7
Zm00001eb323570 Zea mays HOM05D001672 ORTHO05D008029 4.7e-07 58.9 127 32.3
Atru.chr12.1702 Acer truncatum HOM05D001672 ORTHO05D008029 6.1e-07 58.5 127 31.5
Solyc04g025290.4 Solanum lycopersicum HOM05D001672 ORTHO05D008029 6.1e-07 58.5 127 30.7
MD12G1263000 Malus domestica HOM05D001672 ORTHO05D008029 8.0e-07 58.2 156 27.6
ECA233G5271 Erigeron canadensis HOM05D001672 ORTHO05D008029 1.0e-06 57.8 140 29.3
Lsat_1_v5_gn_8_2240 Lactuca sativa HOM05D001672 ORTHO05D008029 1.0e-06 57.8 127 31.5
Ca_08007_v3 Cicer arietinum L. HOM05D001672 ORTHO05D008029 1.4e-06 57.4 127 28.3
FvH4_6g00190 Fragaria vesca HOM05D001672 ORTHO05D008029 1.8e-06 57.0 127 28.3
Oeu043105.1 Olea europaea HOM05D001672 ORTHO05D008153 1.8e-06 57.0 51 56.9
Psat3g102320 Pisum sativum HOM05D001672 ORTHO05D008029 1.8e-06 57.0 127 29.1
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.3e-06 56.6 131 28.2
QL01p048021 Quercus lobata HOM05D001672 ORTHO05D008029 3.0e-06 56.2 127 29.9
Rhsim09G0128900 Rhododendron simsii HOM05D001672 ORTHO05D008029 3.0e-06 56.2 129 31.0
vmacro10415 Vaccinium macrocarpon HOM05D001672 ORTHO05D008029 4.0e-06 55.8 154 28.6
Dinv21370 Davidia involucrata HOM05D001672 ORTHO05D008029 8.8e-06 54.7 128 29.7


User provided reference genes

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