Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 1.2e-163 579.7 287 100.0
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.0e-109 400.6 282 75.2
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 8.1e-107 391.0 255 78.8
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-105 387.1 221 86.0
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 8.4e-104 380.9 278 71.2
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-103 380.6 279 72.0
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 3.2e-103 379.0 244 79.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 4.6e-102 375.2 256 75.8
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.0e-101 372.5 223 82.1
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 5.1e-101 371.7 221 82.4
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 8.7e-101 370.9 217 83.9
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 8.7e-101 370.9 272 71.3
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.5e-100 370.2 279 70.6
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 1.5e-100 370.2 249 73.5
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 5.6e-100 368.2 217 83.4
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.7e-99 365.2 271 66.1
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 1.4e-98 363.6 251 72.9
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.4e-98 363.6 280 68.6
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.4e-98 362.8 263 71.5
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.4e-98 362.8 263 69.6
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 5.3e-98 361.7 260 72.3
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 6.9e-98 361.3 278 68.3
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.2e-97 360.5 217 79.3
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 1.5e-97 360.1 277 70.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 2.0e-97 359.8 278 70.5
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.4e-97 358.6 216 81.0
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.7e-96 356.7 228 75.9
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.7e-96 356.7 221 78.7
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.9e-96 355.1 222 77.9
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 6.4e-96 354.8 249 72.3
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 8.4e-96 354.4 217 78.8
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.4e-95 353.6 256 69.5
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.9e-95 353.2 222 77.0
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 3.2e-95 352.4 244 72.5
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.2e-95 352.1 273 68.5
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.2e-95 352.1 219 77.2
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 7.1e-95 351.3 246 74.8
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 9.3e-95 350.9 247 70.4
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 9.3e-95 350.9 247 70.4
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 9.3e-95 350.9 271 67.5
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.1e-94 349.7 277 66.4
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.1e-94 349.7 222 76.6
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 3.5e-94 349.0 213 80.3
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 4.6e-94 348.6 278 68.0
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 6.0e-94 348.2 222 78.4
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 6.0e-94 348.2 276 67.4
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 7.8e-94 347.8 246 73.2
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.8e-94 347.8 218 78.4
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 7.8e-94 347.8 224 74.6
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.0e-93 347.4 246 72.4
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.7e-93 346.7 271 67.9
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.7e-93 346.7 217 77.4
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.7e-93 346.7 249 69.9
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.7e-93 346.7 224 74.1
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.3e-93 346.3 236 71.2
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 2.3e-93 346.3 225 78.7
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 6.6e-93 344.7 217 77.4
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.5e-92 343.6 235 72.3
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.6e-91 339.0 218 75.7
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.4e-90 337.0 218 75.2
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.4e-90 337.0 217 78.3
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.4e-90 336.3 220 77.3
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 9.0e-90 334.3 217 77.9
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.6e-89 332.8 204 77.9
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 4.5e-89 332.0 217 77.0
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 7.6e-89 331.3 289 62.3
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.7e-88 330.1 279 62.7
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.4e-87 327.0 216 75.5
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 3.2e-87 325.9 291 62.9
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 5.4e-87 325.1 240 66.7
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 5.4e-87 325.1 223 71.7
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 9.3e-87 324.3 205 78.0
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.1e-86 323.2 286 60.5
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.1e-86 323.2 224 71.4
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.0e-85 320.9 280 61.8
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.3e-85 320.5 253 66.0
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.1e-85 318.5 170 89.4
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 5.1e-85 318.5 218 72.0
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 8.7e-85 317.8 218 72.5
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.1e-84 317.4 262 63.4
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.9e-84 316.6 220 70.0
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.3e-84 315.8 170 89.4
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 9.6e-84 314.3 231 71.0
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 9.6e-84 314.3 171 87.1
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.6e-83 313.5 229 72.1
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 2.1e-83 313.2 221 69.2
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.1e-83 313.2 221 71.9
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.8e-83 312.8 209 75.1
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 2.8e-83 312.8 172 86.6
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 4.8e-83 312.0 221 68.8
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 8.1e-83 311.2 218 69.3
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.1e-82 310.8 284 60.2
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 3.1e-82 309.3 216 70.8
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 3.1e-82 309.3 218 70.6
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 3.1e-82 309.3 228 68.4
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.3e-82 308.5 229 71.2
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.2e-81 307.4 216 70.4
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 4.5e-81 305.4 284 60.2
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 9.9e-81 304.3 221 67.0
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 3.8e-80 302.4 247 66.0
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.9e-80 302.0 216 70.8
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 8.4e-80 301.2 219 68.5
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.4e-80 301.2 170 85.3
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.1e-79 300.8 279 57.7
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 5.5e-79 298.5 213 68.5
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 5.5e-79 298.5 217 68.7
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 7.1e-79 298.1 222 68.0
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 2.7e-78 296.2 213 66.7
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.6e-78 295.4 216 68.5
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 4.6e-78 295.4 170 80.6
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 7.9e-78 294.7 219 64.8
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.0e-77 294.3 202 74.3
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.3e-77 293.9 223 66.8
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 5.1e-77 292.0 227 63.4
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-76 290.8 229 67.7
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 5.6e-76 288.5 273 57.9
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 3.1e-74 282.7 197 69.5
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 3.1e-74 282.7 147 91.2
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 5.3e-74 282.0 197 69.5
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 4.5e-73 278.9 171 76.6
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.8e-72 275.8 218 67.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.3e-69 266.5 206 67.5
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-68 264.2 145 86.2
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.3e-68 262.7 194 68.6
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 7.4e-68 261.5 189 69.8
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 3.7e-67 259.2 189 68.8
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.6e-62 243.8 222 61.3
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.7e-62 243.0 131 87.0
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.0e-61 241.1 145 80.7
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.8e-61 240.4 164 72.6
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 3.0e-61 239.6 227 58.6
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 4.8e-59 232.3 156 71.8
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 3.8e-56 222.6 189 60.3
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.2e-55 219.5 247 50.6
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 2.0e-52 210.3 159 66.0
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 5.7e-52 208.8 117 82.1
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 7.0e-50 201.8 107 87.9
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.2e-49 201.1 285 45.3
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.0e-49 200.3 231 50.2
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 2.9e-48 196.4 227 48.5
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.2e-46 191.0 243 45.3
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 8.8e-45 184.9 116 77.6
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 8.8e-45 184.9 100 84.0
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.0e-42 175.3 170 57.6
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 2.0e-41 173.7 182 52.7
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.0e-40 171.4 247 42.9
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 2.1e-38 163.7 148 54.1
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 8.0e-38 161.8 186 52.2
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 2.6e-36 156.8 90 77.8
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 2.6e-36 156.8 139 60.4
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.0e-32 142.5 175 49.1
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 7.0e-26 122.1 61 90.2
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 9.5e-23 111.7 159 47.8
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.6e-22 110.9 135 53.3
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 3.0e-21 106.7 61 77.0
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 4.1e-18 96.3 84 48.8
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.0e-17 94.0 140 35.7
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.7e-16 90.9 73 63.0
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.3e-16 90.5 222 29.3
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 6.6e-16 89.0 69 56.5
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.5e-15 87.8 69 56.5
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.4e-10 70.5 40 77.5
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.0e-10 68.9 78 51.3
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.3e-08 64.7 55 56.4
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.0e-08 62.8 55 54.5
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 1.6e-06 57.8 46 65.2


User provided reference genes

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