Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30240 Davidia involucrata HOM05D000439 ORTHO05D009874 2.8e-156 555.4 328 100.0
CSS0019665 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D009874 3.6e-50 203.0 213 60.6
Dinv14212 Davidia involucrata HOM05D000439 ORTHO05D009874 3.5e-45 186.4 222 54.5
DCAR_006251 Daucus carota HOM05D000439 ORTHO05D009874 8.2e-39 165.2 225 47.6
vmacro05352 Vaccinium macrocarpon HOM05D000439 ORTHO05D009874 7.0e-38 162.2 236 48.7
Hma1.2p1_0140F.1_g063700 Hydrangea macrophylla HOM05D000439 ORTHO05D009874 3.5e-37 159.8 237 46.8
PGSC0003DMG400018590 Solanum tuberosum HOM05D000439 ORTHO05D009874 3.8e-36 156.4 222 45.0
Sopen11g029020 Solanum pennellii HOM05D000439 ORTHO05D009874 1.9e-35 154.1 223 44.4
Lsat_1_v5_gn_6_69441 Lactuca sativa HOM05D000439 ORTHO05D009874 7.2e-35 152.1 245 45.7
Lj8P606T15 Lonicera japonica HOM05D000439 ORTHO05D009874 1.2e-34 151.4 213 48.8
Nitab4.5_0005666g0030 Nicotiana tabacum HOM05D000439 ORTHO05D009874 8.0e-34 148.7 219 44.7
TAR624G0363 Trochodendron aralioides HOM05D000439 ORTHO05D009874 2.3e-33 147.1 223 42.6
TAR636G1267 Trochodendron aralioides HOM05D000439 ORTHO05D009874 5.2e-33 146.0 223 43.0
Dinv42713 Davidia involucrata HOM05D000001 ORTHO05D010830 1.2e-32 144.8 126 81.0
Dinv43388 Davidia involucrata HOM05D000001 ORTHO05D010830 1.2e-32 144.8 126 81.0
CAN.G309.78 Capsicum annuum HOM05D000439 ORTHO05D009874 3.4e-32 143.3 221 42.5
Nn2g11770 Nelumbo nucifera HOM05D000439 ORTHO05D009874 7.5e-32 142.1 224 41.1
COL.COLO4_34901 Corchorus olitorius HOM05D000439 ORTHO05D009874 1.7e-31 141.0 218 40.4
Haze_25703 Corylus avellana HOM05D000439 ORTHO05D009874 2.8e-31 140.2 210 44.3
Thecc.09G112300 Theobroma cacao HOM05D000439 ORTHO05D009874 6.3e-31 139.0 219 42.5
Lalb_Chr05g0222771 Lupinus albus HOM05D000439 ORTHO05D009874 1.1e-30 138.3 233 38.6
CiPaw.03G233300 Carya illinoinensis HOM05D000439 ORTHO05D009874 3.1e-30 136.7 213 42.7
Rhsim07G0155300 Rhododendron simsii HOM05D000439 ORTHO05D009874 9.1e-30 135.2 213 46.5
Duzib187G1055 Durio zibethinus HOM05D000439 ORTHO05D009874 1.2e-29 134.8 223 40.8
FAN23G0749 Fragaria x ananassa HOM05D000439 ORTHO05D009874 3.5e-29 133.3 228 40.4
Glyma.05G231700 Glycine max HOM05D000439 ORTHO05D009874 5.9e-29 132.5 210 42.4
FAN28G0603 Fragaria x ananassa HOM05D000439 ORTHO05D009874 1.7e-28 131.0 222 41.0
MD15G1187200 Malus domestica HOM05D000439 ORTHO05D009874 2.2e-28 130.6 212 41.0
Aqoxy7G03789 Aquilegia oxysepala HOM05D000439 ORTHO05D009874 6.5e-28 129.0 212 41.0
Potri.018G078701 Populus trichocarpa HOM05D000439 ORTHO05D009874 8.5e-28 128.6 229 42.8
FvH4_1g05070 Fragaria vesca HOM05D000439 ORTHO05D009874 2.5e-27 127.1 221 40.3
RcHm_v2.0_Chr2g0090711 Rosa chinensis HOM05D000439 ORTHO05D009874 2.5e-27 127.1 228 38.6
VMungo0251G2870 Vigna mungo HOM05D000439 ORTHO05D009874 2.5e-27 127.1 218 39.4
FAN19G0670 Fragaria x ananassa HOM05D000439 ORTHO05D009874 4.2e-27 126.3 221 40.3
FAN26G1741 Fragaria x ananassa HOM05D000439 ORTHO05D009874 4.2e-27 126.3 222 40.1
Glyma.08G039100 Glycine max HOM05D000439 ORTHO05D009874 4.2e-27 126.3 210 41.0
TWI63G1161 Tripterygium wilfordii HOM05D000439 ORTHO05D009874 4.2e-27 126.3 218 42.7
TWI34G1498 Tripterygium wilfordii HOM05D000439 ORTHO05D009874 5.5e-27 125.9 228 38.2
Prupe.7G229200 Prunus persica HOM05D000439 ORTHO05D009874 7.2e-27 125.6 221 39.8
Phvul.002G313900 Phaseolus vulgaris HOM05D000439 ORTHO05D009874 9.5e-27 125.2 218 38.5
Psat7g013680 Pisum sativum HOM05D000439 ORTHO05D009874 2.1e-26 124.0 215 39.1
Sabra18G0066700 Salix brachista HOM05D000439 ORTHO05D009874 1.4e-25 121.3 231 41.1
Lsat_1_v5_gn_6_63921 Lactuca sativa HOM05D000439 ORTHO05D009874 3.0e-25 120.2 258 37.2
Lj4g0010983 Lotus japonicus HOM05D000439 ORTHO05D009874 4.0e-25 119.8 209 39.2
Atru.chr7.1332 Acer truncatum HOM05D000439 ORTHO05D009874 8.8e-25 118.6 225 38.2
CANSAT56G0657 Cannabis sativa HOM05D000439 ORTHO05D009874 8.8e-25 118.6 211 37.9
Eucgr.C01055 Eucalyptus grandis HOM05D000439 ORTHO05D009874 8.8e-25 118.6 224 39.7
Actinidia15722 Actinidia chinensis HOM05D000439 ORTHO05D009874 2.0e-24 117.5 179 45.8
arahy.Tifrunner.gnm1.ann1.SJT80M Arachis hypogaea HOM05D000439 ORTHO05D009874 3.4e-24 116.7 214 38.8
PSO063G1966 Papaver somniferum HOM05D000439 ORTHO05D009874 7.5e-24 115.5 222 33.3
MBI04_g08933_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D009874 3.7e-23 113.2 205 38.5
QL02p085596 Quercus lobata HOM05D000439 ORTHO05D009874 3.7e-23 113.2 195 40.0
Ciclev10007961m.g Citrus clementina HOM05D000439 ORTHO05D009874 4.9e-23 112.8 219 37.4
Medtr8g083500 Medicago truncatula HOM05D000439 ORTHO05D009874 4.9e-23 112.8 212 40.1
Nitab4.5_0013404g0010 Nicotiana tabacum HOM05D000439 ORTHO05D009874 1.4e-22 111.3 234 38.0
Manes.03G019300 Manihot esculenta HOM05D000439 ORTHO05D009874 4.1e-22 109.8 208 38.0
ECA233G4623 Erigeron canadensis HOM05D000439 ORTHO05D009874 5.4e-22 109.4 172 45.3
MD02G1048900 Malus domestica HOM05D000439 ORTHO05D009874 9.2e-22 108.6 170 41.2
TPR.G21705 Trifolium pratense HOM05D000439 ORTHO05D009874 9.2e-22 108.6 220 37.7
Lalb_Chr09g0331151 Lupinus albus HOM05D000439 ORTHO05D009874 1.2e-21 108.2 221 34.8
RhsimUnG0233300 Rhododendron simsii HOM05D000439 ORTHO05D009874 7.8e-21 105.5 228 39.5
Rhsim02G0184500 Rhododendron simsii HOM05D000439 ORTHO05D009874 1.3e-20 104.8 228 39.5
Gohir.A07G007000 Gossypium hirsutum HOM05D000439 ORTHO05D009874 2.3e-20 104.0 200 38.5
Hund09196 Selenicereus undatus HOM05D000439 ORTHO05D009874 2.9e-20 103.6 221 35.7
Actinidia14654 Actinidia chinensis HOM05D000439 ORTHO05D009874 5.0e-20 102.8 100 58.0
Gorai.001G004500 Gossypium raimondii HOM05D000439 ORTHO05D009874 6.6e-20 102.4 199 38.2
Gohir.D07G004900 Gossypium hirsutum HOM05D000439 ORTHO05D009874 8.6e-20 102.1 195 38.5
CSS0013890 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010830 1.5e-19 101.3 118 57.6
Ca_17341_v3 Cicer arietinum L. HOM05D000439 ORTHO05D009874 1.9e-19 100.9 192 37.5
Rhsim01G0003700 Rhododendron simsii HOM05D000001 ORTHO05D010830 3.3e-19 100.1 124 57.3
CDE06G2587 Ceratophyllum demersum HOM05D000439 ORTHO05D009874 4.3e-19 99.8 220 34.1
Solyc11g071340.3 Solanum lycopersicum HOM05D000439 ORTHO05D009874 7.3e-19 99.0 174 40.8
CDE07G1583 Ceratophyllum demersum HOM05D000439 ORTHO05D009874 2.1e-18 97.4 221 33.5
PGR142G3353 Punica granatum HOM05D000439 ORTHO05D009874 2.8e-18 97.1 198 37.9
AUR62021518 Chenopodium quinoa HOM05D000439 ORTHO05D009874 3.6e-18 96.7 210 36.7
Hund26144 Selenicereus undatus HOM05D000439 ORTHO05D009874 4.7e-18 96.3 221 32.6
Sc14g0006950 Simmondsia chinensis HOM05D000439 ORTHO05D009874 2.3e-17 94.0 224 33.0
EL10Ac8g18511 Beta vulgaris HOM05D000439 ORTHO05D009874 2.6e-16 90.5 233 33.5
arahy.Tifrunner.gnm1.ann1.TMN1XJ Arachis hypogaea HOM05D000778 ORTHO05D000601 6.4e-15 85.9 125 57.6
Hma1.2p1_1025F.1_g249390 Hydrangea macrophylla HOM05D000001 ORTHO05D010830 6.4e-15 85.9 126 57.1
CSS0047367 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010830 1.1e-14 85.1 123 64.2
Actinidia02456 Actinidia chinensis HOM05D000001 ORTHO05D010830 2.4e-14 84.0 124 61.3
Manes.14G152500 Manihot esculenta HOM05D000001 ORTHO05D010830 2.4e-14 84.0 126 57.9
Psat2g149720 Pisum sativum HOM05D000001 ORTHO05D010830 4.1e-14 83.2 129 59.7
arahy.Tifrunner.gnm1.ann1.AZ81U3 Arachis hypogaea HOM05D000439 ORTHO05D009874 5.4e-14 82.8 214 34.1
Lalb_Chr04g0259071 Lupinus albus HOM05D000001 ORTHO05D010830 1.6e-13 81.3 124 63.7
Lalb_Chr08g0234591 Lupinus albus HOM05D000001 ORTHO05D010830 1.6e-13 81.3 124 63.7
TAR383G0416 Trochodendron aralioides HOM05D000001 ORTHO05D010830 2.0e-13 80.9 126 59.5
Ah.10g028890 Amaranthus hybridus HOM05D000439 ORTHO05D009874 3.5e-13 80.1 240 28.8
arahy.Tifrunner.gnm1.ann1.647TR8 Arachis hypogaea HOM05D000001 ORTHO05D010830 3.5e-13 80.1 124 59.7
AUR62011007 Chenopodium quinoa HOM05D000439 ORTHO05D009874 1.7e-12 77.8 163 38.7
Sc14g0000380 Simmondsia chinensis HOM05D000439 ORTHO05D009874 3.0e-12 77.0 240 28.8
Medtr8g087980 Medicago truncatula HOM05D000001 ORTHO05D010830 5.0e-12 76.3 130 56.2
ATR1120G089 Amborella trichopoda HOM05D000439 ORTHO05D009874 1.5e-11 74.7 230 29.6
RcHm_v2.0_Chr1g0380711 Rosa chinensis HOM05D000001 ORTHO05D010830 1.5e-11 74.7 129 48.8
Nn8g39901 Nelumbo nucifera HOM05D000001 ORTHO05D010830 2.5e-11 73.9 124 58.1
TAR371G0577 Trochodendron aralioides HOM05D000001 ORTHO05D010830 5.6e-11 72.8 126 56.3
Medtr3g111500 Medicago truncatula HOM05D000001 ORTHO05D010830 7.3e-11 72.4 130 52.3
TPR.G12443 Trifolium pratense HOM05D000001 ORTHO05D010830 1.2e-10 71.6 126 59.5
Dinv41233 Davidia involucrata HOM05D000001 ORTHO05D010830 2.1e-10 70.9 138 38.4
MD04G1188600 Malus domestica HOM05D000001 ORTHO05D010830 2.1e-10 70.9 126 56.3
Dinv13996 Davidia involucrata HOM05D000439 ORTHO05D006172 2.8e-10 70.5 240 27.9
Ah.14g081840 Amaranthus hybridus HOM05D000439 ORTHO05D009874 3.6e-10 70.1 202 27.7
Aqoxy2G01594 Aquilegia oxysepala HOM05D000001 ORTHO05D010830 6.2e-10 69.3 124 56.5
Ca_15535_v3 Cicer arietinum L. HOM05D000001 ORTHO05D010830 1.4e-09 68.2 131 55.0
MD13G1252400 Malus domestica HOM05D000001 ORTHO05D010830 1.8e-09 67.8 126 55.6
Peaxi162Scf00276g01016 Petunia axillaris HOM05D000439 ORTHO05D009874 1.8e-09 67.8 142 35.2
HanXRQChr10g0308481 Helianthus annuus HOM05D000001 ORTHO05D010830 3.1e-09 67.0 126 53.2
ClCG06G006240 Citrullus lanatus HOM05D000439 ORTHO05D006172 4.0e-09 66.6 238 28.2
DCAR_020125 Daucus carota HOM05D002728 ORTHO05D010830 4.0e-09 66.6 124 46.0
HanXRQChr12g0365941 Helianthus annuus HOM05D000001 ORTHO05D010830 6.8e-09 65.9 126 52.4
HanXRQChr09g0267011 Helianthus annuus HOM05D000001 ORTHO05D010830 8.9e-09 65.5 126 51.6
Sed0018003 Sechium edule HOM05D000439 ORTHO05D006172 1.2e-08 65.1 238 28.2
CsaV3_7G022490 Cucumis sativus L. HOM05D000439 ORTHO05D006172 2.0e-08 64.3 238 27.7
Eucgr.H03480 Eucalyptus grandis HOM05D000439 ORTHO05D006172 2.6e-08 63.9 241 26.6
Hund12129 Selenicereus undatus HOM05D000439 ORTHO05D006172 3.4e-08 63.5 239 29.3
MELO3C012651.2 Cucumis melo HOM05D000439 ORTHO05D006172 4.4e-08 63.2 238 28.2
Lsat_1_v5_gn_5_85060 Lactuca sativa HOM05D000001 ORTHO05D010830 4.4e-08 63.2 126 54.8
arahy.Tifrunner.gnm1.ann1.JR532J Arachis hypogaea HOM05D000439 ORTHO05D006172 9.8e-08 62.0 241 27.0
arahy.Tifrunner.gnm1.ann1.Y59G7X Arachis hypogaea HOM05D000439 ORTHO05D006172 9.8e-08 62.0 241 27.0
MD13G1193100 Malus domestica HOM05D000439 ORTHO05D006172 9.8e-08 62.0 238 26.5
CSS0012474 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 1.7e-07 61.2 238 26.1
Lj7P636T38 Lonicera japonica HOM05D000001 ORTHO05D000003 1.7e-07 61.2 127 28.3
Atru.chr5.3584 Acer truncatum HOM05D000528 ORTHO05D010830 2.9e-07 60.5 126 53.2
TWI09G0034 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 2.9e-07 60.5 241 26.6
MD16G1194000 Malus domestica HOM05D000439 ORTHO05D006172 3.7e-07 60.1 238 25.6
GSVIVG01015405001 Vitis vinifera HOM05D000439 ORTHO05D009874 3.7e-07 60.1 43 67.4
CSS0039469 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010830 6.4e-07 59.3 55 54.5
CANSAT11G0640 Cannabis sativa HOM05D000001 ORTHO05D010830 6.4e-07 59.3 126 54.0
AUR62034747 Chenopodium quinoa HOM05D000439 ORTHO05D006172 6.4e-07 59.3 241 29.5
Cfa015646 Carpinus fangiana HOM05D000439 ORTHO05D006172 8.3e-07 58.9 240 27.1
EL10As3g23288 Beta vulgaris HOM05D000439 ORTHO05D006172 1.1e-06 58.5 241 27.8
Ciclev10004753m.g Citrus clementina HOM05D000439 ORTHO05D006172 1.1e-06 58.5 237 25.3
Hma1.2p1_0602F.1_g187340 Hydrangea macrophylla HOM05D000439 ORTHO05D006172 1.1e-06 58.5 238 26.1
Sed0012776 Sechium edule HOM05D000001 ORTHO05D000003 1.1e-06 58.5 125 28.8
ATR0697G242 Amborella trichopoda HOM05D000439 ORTHO05D006172 1.4e-06 58.2 228 26.3
AUR62033634 Chenopodium quinoa HOM05D000439 ORTHO05D006172 1.4e-06 58.2 241 29.0
Haze_00899 Corylus avellana HOM05D000439 ORTHO05D006172 1.4e-06 58.2 240 26.7
Os03g0794900 Oryza sativa ssp. japonica HOM05D000439 ORTHO05D006172 1.4e-06 58.2 230 24.8
HPP92_022415 Vanilla planifolia HOM05D000001 ORTHO05D010830 1.4e-06 58.2 117 28.2
Glyma.12G005600 Glycine max HOM05D000001 ORTHO05D010830 1.9e-06 57.8 51 56.9
Gohir.A06G126600 Gossypium hirsutum HOM05D000001 ORTHO05D010094 1.9e-06 57.8 124 30.6
Gorai.010G153300 Gossypium raimondii HOM05D000001 ORTHO05D010094 1.9e-06 57.8 124 30.6
Glyma.15G103100 Glycine max HOM05D000001 ORTHO05D009507 2.4e-06 57.4 109 29.4
TWI73G0578 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 2.4e-06 57.4 242 26.0
Atru.chr3.681 Acer truncatum HOM05D003484 ORTHO05D004152 3.2e-06 57.0 55 47.3
AT4G14900 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 3.2e-06 57.0 242 26.0
CARHR221480 Cardamine hirsuta HOM05D000439 ORTHO05D006172 4.1e-06 56.6 243 26.3
Prupe.1G084600 Prunus persica HOM05D000001 ORTHO05D010830 4.1e-06 56.6 126 53.2
Rhsim04G0202100 Rhododendron simsii HOM05D000439 ORTHO05D006172 4.1e-06 56.6 197 26.9
Actinidia23511 Actinidia chinensis HOM05D000439 ORTHO05D006172 7.0e-06 55.8 179 29.1
CiPaw.11G019600 Carya illinoinensis HOM05D000001 ORTHO05D000003 7.0e-06 55.8 113 29.2
AUR62002641 Chenopodium quinoa HOM05D000001 ORTHO05D009507 7.0e-06 55.8 127 45.7
AL7G40950 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 9.2e-06 55.5 239 25.5
GSVIVG01007645001 Vitis vinifera HOM05D000001 ORTHO05D000003 9.2e-06 55.5 109 27.5
GSVIVG01033304001 Vitis vinifera HOM05D000001 ORTHO05D000003 9.2e-06 55.5 125 27.2


User provided reference genes

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