Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 4959.0 2530 100.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 4459.8 2532 90.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 4089.3 2542 83.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 4028.0 2531 81.9
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3900.5 2575 78.5
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3863.2 2547 78.2
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3839.3 2534 78.5
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3830.8 2545 77.4
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3825.8 2536 78.1
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3804.6 2539 77.6
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3800.8 2535 77.1
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3796.5 2537 77.7
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3792.7 2542 77.2
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3786.9 2863 71.4
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3781.5 2550 76.4
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3776.9 2562 76.2
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3762.6 2542 76.4
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3761.1 2571 75.9
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3756.1 2537 76.5
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3734.5 2552 76.2
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3722.9 2539 76.1
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3672.9 2547 74.4
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3640.9 2550 73.7
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3615.9 2530 74.0
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3606.2 2531 74.2
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3597.0 2541 73.5
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3590.8 2601 73.1
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3589.7 2538 73.5
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3589.3 2540 73.0
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3580.8 2541 73.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3578.1 2530 72.6
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3561.2 2532 72.6
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3560.4 2551 72.8
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3546.9 2533 72.9
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3543.1 2525 72.2
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3524.6 2538 72.6
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3518.4 2357 77.6
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3511.5 2551 72.5
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3487.2 2543 71.8
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3463.3 2541 71.8
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3459.8 2591 71.4
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3447.1 2538 71.0
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3444.1 2549 70.2
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3438.7 2561 70.7
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3429.4 2559 70.6
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3429.0 2567 70.9
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3419.0 2545 69.7
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3397.8 2552 69.5
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3345.8 2537 68.8
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3340.4 2232 77.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3285.7 2413 72.0
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3262.2 2546 68.0
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3249.9 2542 67.3
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3241.4 2542 67.3
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3236.4 2554 67.3
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3228.7 2550 66.8
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3223.3 2545 66.8
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3206.0 2540 67.0
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3206.0 2542 67.0
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 3188.7 2617 67.1
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3178.3 2542 66.6
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 3171.3 2086 78.3
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3164.4 2547 65.8
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3158.6 2546 65.7
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3145.5 2579 65.1
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3140.5 2579 64.9
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 3135.9 1872 86.1
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 3068.9 2565 63.9
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 3027.3 2235 70.7
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2965.6 1888 80.9
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2831.2 2035 71.8
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2682.9 1733 79.4
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2646.3 1643 82.2
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2541.9 1830 72.1
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2407.1 1734 72.2
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2403.6 1776 72.1
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2400.9 2310 57.1
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2382.4 1725 73.2
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2167.5 1695 67.5
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2140.9 2706 47.3
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2102.8 2779 45.6
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 2008.8 1185 85.8
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1931.8 1178 85.1
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1765.0 1488 63.2
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1739.5 1146 79.1
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1721.8 1421 65.7
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1707.2 1099 81.3
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1689.5 2560 41.7
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1636.3 1162 75.5
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1616.3 1144 75.1
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1603.6 1478 59.2
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1526.1 1621 53.2
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1508.0 2364 40.9
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1461.4 2674 37.4
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1426.0 1187 64.9
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1418.7 854 84.4
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1365.1 1172 64.2
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1254.6 744 85.3
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1232.2 901 69.6
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1163.7 1026 63.5
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1097.0 672 83.9
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 6.5e-301 1038.9 1128 52.0
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 4.4e-289 999.6 610 85.4
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 8.0e-275 952.2 633 77.3
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.1e-268 931.8 909 57.1
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 7.5e-257 892.5 1049 50.6
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.7e-256 891.3 901 55.6
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.8e-225 786.6 659 62.2
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 7.6e-225 786.2 729 60.2
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 5.6e-220 770.0 657 61.5
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 1.5e-212 745.3 496 75.8
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.3e-205 722.2 844 53.2
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 6.3e-195 686.8 676 55.3
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 3.4e-193 681.0 856 46.6
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.7e-192 678.7 489 69.5
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 8.5e-184 649.8 549 64.3
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.8e-181 642.1 385 82.3
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 7.5e-180 636.7 614 61.6
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.8e-178 632.1 503 69.0
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 6.5e-176 623.6 485 67.0
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 2.1e-150 538.9 481 60.5
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 8.9e-125 453.8 513 48.5
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 3.8e-115 421.8 264 77.3
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.3e-112 413.3 240 90.4
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.8e-96 359.8 347 54.5
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 6.7e-96 357.8 204 92.6
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 7.4e-95 354.4 229 77.7
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.6e-94 353.2 180 94.4
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 3.3e-87 328.9 219 75.8
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.3e-86 327.0 180 86.7
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 3.1e-85 322.4 266 64.7
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 6.9e-77 294.7 316 53.2
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.5e-76 293.5 302 52.0
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 1.0e-75 290.8 151 94.7
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 1.1e-74 287.3 303 53.5
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.2e-74 285.8 158 86.1
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.1e-69 270.8 300 51.0
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 2.6e-68 266.2 289 55.4
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 5.2e-56 225.3 306 45.4
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.2e-55 224.2 338 42.0
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 1.4e-48 200.7 252 46.0
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.4e-40 174.1 116 77.6
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 2.3e-40 173.3 1286 23.6
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.6e-39 169.9 143 62.9
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 3.2e-37 162.9 105 79.0
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.7e-35 157.1 116 75.9
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.4e-32 147.5 142 52.8
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 1.5e-31 144.1 139 56.8
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.5e-31 144.1 121 62.0
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 3.5e-28 132.9 101 75.2
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 3.5e-28 132.9 101 75.2
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 4.3e-26 125.9 120 59.2
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 6.2e-25 122.1 81 77.8
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.3e-19 104.4 129 55.8
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.7e-19 104.0 79 68.4
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 6.6e-19 102.1 93 55.9
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.5e-18 100.1 123 58.5
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.8e-17 96.7 73 74.0
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 1.8e-16 94.0 154 40.9
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.4e-16 93.6 60 75.0
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 2.0e-15 90.5 73 69.9
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 2.0e-15 90.5 60 75.0
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 2.0e-15 90.5 81 56.8
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 6.4e-14 85.5 45 91.1
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.4e-13 84.3 67 67.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.4e-13 84.3 67 67.2
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.9e-13 84.0 88 50.0
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 7.8e-12 78.6 51 78.4
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.6e-11 75.5 66 65.2
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 8.7e-11 75.1 48 79.2
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.9e-10 73.9 201 35.3
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 2.5e-10 73.6 98 48.0
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 8.1e-09 68.6 105 45.7
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.6e-07 63.5 70 51.4
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 5.8e-07 62.4 52 57.7


User provided reference genes

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