Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30127 Davidia involucrata HOM05D002093 ORTHO05D003877 6.0e-68 260.8 136 100.0
Dinv39847 Davidia involucrata HOM05D002093 ORTHO05D003877 7.9e-12 74.3 44 81.8
Solyc02g090870.1 Solanum lycopersicum HOM05D002093 ORTHO05D003877 3.9e-11 72.0 60 65.0
Sopen02g035520 Solanum pennellii HOM05D002093 ORTHO05D003877 3.9e-11 72.0 60 65.0
PGSC0003DMG400004041 Solanum tuberosum HOM05D002093 ORTHO05D003877 3.9e-11 72.0 60 65.0
Dinv29894 Davidia involucrata HOM05D000458 ORTHO05D006287 5.1e-11 71.6 42 90.5
Actinidia16482 Actinidia chinensis HOM05D002093 ORTHO05D003877 6.7e-11 71.2 60 65.0
Cfa004024 Carpinus fangiana HOM05D002093 ORTHO05D003877 2.0e-10 69.7 62 67.7
Haze_15397 Corylus avellana HOM05D002093 ORTHO05D003877 2.0e-10 69.7 62 67.7
MSTRG.23745 Avicennia marina HOM05D002093 ORTHO05D003877 4.4e-10 68.6 48 68.8
Nitab4.5_0002440g0020 Nicotiana tabacum HOM05D002093 ORTHO05D003877 4.4e-10 68.6 60 63.3
Manes.13G124200 Manihot esculenta HOM05D002093 ORTHO05D003877 5.7e-10 68.2 59 66.1
Migut.H00432 Erythranthe guttata HOM05D002093 ORTHO05D003877 7.4e-10 67.8 44 75.0
Lj7A69T48 Lonicera japonica HOM05D002093 ORTHO05D003877 9.7e-10 67.4 44 72.7
Nitab4.5_0002016g0100 Nicotiana tabacum HOM05D002093 ORTHO05D003877 9.7e-10 67.4 60 61.7
Oeu018957.1 Olea europaea HOM05D002093 ORTHO05D003877 9.7e-10 67.4 44 72.7
CAN.G660.8 Capsicum annuum HOM05D002093 ORTHO05D003877 1.7e-09 66.6 44 75.0
CSS0014053 Camellia sinensis var. sinensis HOM05D002093 ORTHO05D003877 2.2e-09 66.2 44 75.0
Oeu031954.1 Olea europaea HOM05D002093 ORTHO05D003877 2.2e-09 66.2 44 70.5
TAR628G1162 Trochodendron aralioides HOM05D002093 ORTHO05D003877 4.8e-09 65.1 57 64.9
MSTRG.15388 Avicennia marina HOM05D002093 ORTHO05D003877 8.2e-09 64.3 44 70.5
MSTRG.2884 Avicennia marina HOM05D002093 ORTHO05D003877 1.1e-08 63.9 44 68.2
CiPaw.01G018000 Carya illinoinensis HOM05D002093 ORTHO05D003877 1.4e-08 63.5 46 73.9
QL06p041362 Quercus lobata HOM05D002093 ORTHO05D003877 1.4e-08 63.5 45 73.3
MD02G1172200 Malus domestica HOM05D002093 ORTHO05D003877 1.8e-08 63.2 45 75.6
MD15G1284400 Malus domestica HOM05D002093 ORTHO05D003877 1.8e-08 63.2 45 75.6
Oeu031953.1 Olea europaea HOM05D002093 ORTHO05D003877 1.8e-08 63.2 39 74.4
CSS0045673 Camellia sinensis var. sinensis HOM05D002093 ORTHO05D003877 2.4e-08 62.8 44 68.2
CANSAT01G0818 Cannabis sativa HOM05D002093 ORTHO05D003877 2.4e-08 62.8 45 73.3
THA.LOC104827141 Tarenaya hassleriana HOM05D002093 ORTHO05D003877 2.4e-08 62.8 60 65.0
DCAR_025734 Daucus carota HOM05D002093 ORTHO05D003877 4.1e-08 62.0 53 60.4
Gohir.D12G069400 Gossypium hirsutum HOM05D002093 ORTHO05D003877 4.1e-08 62.0 45 68.9
AL8G44340 Arabidopsis lyrata HOM05D002093 ORTHO05D003877 5.3e-08 61.6 50 66.0
Cpa.g.sc55.147 Carica papaya HOM05D002093 ORTHO05D003877 5.3e-08 61.6 45 71.1
ClCG01G016830 Citrullus lanatus HOM05D002093 ORTHO05D003877 5.3e-08 61.6 43 72.1
Ciclev10025785m.g Citrus clementina HOM05D002093 ORTHO05D003877 5.3e-08 61.6 65 55.4
MELO3C000152.2 Cucumis melo HOM05D002093 ORTHO05D003877 5.3e-08 61.6 43 72.1
CsaV3_6G043270 Cucumis sativus L. HOM05D002093 ORTHO05D003877 5.3e-08 61.6 43 72.1
Lsat_1_v5_gn_4_166281 Lactuca sativa HOM05D002093 ORTHO05D003877 5.3e-08 61.6 59 50.8
Aa31LG1G15550 Aethionema arabicum HOM05D002093 ORTHO05D003877 7.0e-08 61.2 54 63.0
AT5G67020 Arabidopsis thaliana HOM05D002093 ORTHO05D003877 7.0e-08 61.2 55 63.6
Duzib187G1344 Durio zibethinus HOM05D002093 ORTHO05D003877 7.0e-08 61.2 45 68.9
HanXRQChr09g0263831 Helianthus annuus HOM05D002093 ORTHO05D003877 7.0e-08 61.2 47 66.0
Thecc.01G056400 Theobroma cacao HOM05D002093 ORTHO05D003877 7.0e-08 61.2 45 68.9
COL.COLO4_11417 Corchorus olitorius HOM05D002093 ORTHO05D003877 9.1e-08 60.8 45 66.7
Gohir.A11G192500 Gossypium hirsutum HOM05D002093 ORTHO05D003877 9.1e-08 60.8 59 61.0
Prupe.7G133200 Prunus persica HOM05D002093 ORTHO05D003877 9.1e-08 60.8 45 73.3
Gorai.008G076000 Gossypium raimondii HOM05D002093 ORTHO05D003877 1.2e-07 60.5 45 68.9
Lj2g0008573 Lotus japonicus HOM05D002093 ORTHO05D003877 1.2e-07 60.5 59 62.7
Duzib147G0327 Durio zibethinus HOM05D002093 ORTHO05D003877 1.5e-07 60.1 45 66.7
Gohir.A12G070900 Gossypium hirsutum HOM05D002093 ORTHO05D003877 1.5e-07 60.1 45 66.7
Gohir.D11G199200 Gossypium hirsutum HOM05D002093 ORTHO05D003877 2.0e-07 59.7 45 66.7
Gorai.007G213400 Gossypium raimondii HOM05D002093 ORTHO05D003877 2.0e-07 59.7 45 66.7
MBI03_g13471_MAGBIO Magnolia biondii HOM05D002093 ORTHO05D003877 2.0e-07 59.7 51 62.7
Manes.12G106900 Manihot esculenta HOM05D002093 ORTHO05D003877 2.0e-07 59.7 45 66.7
Medtr5g017410 Medicago truncatula HOM05D002093 ORTHO05D003877 2.0e-07 59.7 59 61.0
vmacro05338 Vaccinium macrocarpon HOM05D002093 ORTHO05D003877 2.0e-07 59.7 43 67.4
FvH4_1g16070 Fragaria vesca HOM05D002093 ORTHO05D003877 2.6e-07 59.3 46 69.6
FAN19G2882 Fragaria x ananassa HOM05D002093 ORTHO05D003877 2.6e-07 59.3 46 69.6
FAN26G2318 Fragaria x ananassa HOM05D002093 ORTHO05D003877 2.6e-07 59.3 46 69.6
FAN28G1260 Fragaria x ananassa HOM05D002093 ORTHO05D003877 2.6e-07 59.3 46 69.6
Gohir.D03G023700 Gossypium hirsutum HOM05D002093 ORTHO05D003877 2.6e-07 59.3 58 56.9
RcHm_v2.0_Chr2g0105691 Rosa chinensis HOM05D002093 ORTHO05D003877 2.6e-07 59.3 58 60.3
Sabra07G0038900 Salix brachista HOM05D002093 ORTHO05D003877 2.6e-07 59.3 61 55.7
Sed0000549 Sechium edule HOM05D002093 ORTHO05D003877 2.6e-07 59.3 59 61.0
Sc03g0001590 Simmondsia chinensis HOM05D002093 ORTHO05D003877 2.6e-07 59.3 67 55.2
TWI73G0884 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 2.6e-07 59.3 60 60.0
Actinidia36495 Actinidia chinensis HOM05D002093 ORTHO05D003877 3.4e-07 58.9 44 68.2
Gorai.003G025200 Gossypium raimondii HOM05D002093 ORTHO05D003877 3.4e-07 58.9 58 56.9
TAR625G0453 Trochodendron aralioides HOM05D002093 ORTHO05D003877 3.4e-07 58.9 55 61.8
CiPaw.02G008200 Carya illinoinensis HOM05D002093 ORTHO05D003877 4.5e-07 58.5 46 69.6
Lalb_Chr09g0323191 Lupinus albus HOM05D002093 ORTHO05D003877 4.5e-07 58.5 54 64.8
TWI53G0455 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 4.5e-07 58.5 57 57.9
MSTRG.3425 Avicennia marina HOM05D002093 ORTHO05D003877 5.9e-07 58.2 44 65.9
CARHR280640 Cardamine hirsuta HOM05D002093 ORTHO05D003877 5.9e-07 58.2 49 63.3
Ca_24769_v3 Cicer arietinum L. HOM05D002093 ORTHO05D003877 5.9e-07 58.2 59 61.0
Cc07_g06000 Coffea canephora HOM05D002093 ORTHO05D003877 5.9e-07 58.2 47 70.2
FAN23G2320 Fragaria x ananassa HOM05D002093 ORTHO05D003877 1.0e-06 57.4 46 67.4
QL11p056367 Quercus lobata HOM05D002093 ORTHO05D003877 1.0e-06 57.4 58 60.3
Gohir.A02G157200 Gossypium hirsutum HOM05D002093 ORTHO05D003877 1.3e-06 57.0 58 55.2
Thhalv10010424m.g Eutrema salsugineum HOM05D002093 ORTHO05D003877 1.7e-06 56.6 72 55.6
Lalb_Chr16g0378551 Lupinus albus HOM05D002093 ORTHO05D003877 1.7e-06 56.6 59 57.6
TPR.G30703 Trifolium pratense HOM05D002093 ORTHO05D003877 1.7e-06 56.6 59 59.3
TWI09G1584 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 1.7e-06 56.6 60 58.3
AT3G50340 Arabidopsis thaliana HOM05D002093 ORTHO05D003877 2.2e-06 56.2 54 61.1
Carub.0005s1665 Capsella rubella HOM05D002093 ORTHO05D003877 2.2e-06 56.2 62 59.7
Potri.007G044200 Populus trichocarpa HOM05D002093 ORTHO05D003877 2.2e-06 56.2 45 62.2
Sp2g29650 Schrenkiella parvula HOM05D002093 ORTHO05D003877 2.2e-06 56.2 52 59.6
TAR381G1348 Trochodendron aralioides HOM05D002093 ORTHO05D003877 2.2e-06 56.2 44 68.2
Migut.K00766 Erythranthe guttata HOM05D002093 ORTHO05D003877 2.9e-06 55.8 61 55.7
PGR102G1838 Punica granatum HOM05D002093 ORTHO05D003877 2.9e-06 55.8 47 63.8
Carub.0008s2748 Capsella rubella HOM05D002093 ORTHO05D003877 5.0e-06 55.1 58 58.6
Hma1.2p1_1705F.1_g298390 Hydrangea macrophylla HOM05D002093 ORTHO05D003877 5.0e-06 55.1 44 65.9
MD04G1063400 Malus domestica HOM05D000458 ORTHO05D006287 5.0e-06 55.1 52 50.0
Oeu031528.1 Olea europaea HOM05D002093 ORTHO05D003877 5.0e-06 55.1 44 61.4
Rhsim10G0117500 Rhododendron simsii HOM05D002093 ORTHO05D003877 6.5e-06 54.7 38 71.1
A09p43350 Brassica napus HOM05D002093 ORTHO05D003877 8.5e-06 54.3 62 58.1
BraA09t39804Z Brassica rapa HOM05D002093 ORTHO05D003877 8.5e-06 54.3 62 58.1
Nn3g19588 Nelumbo nucifera HOM05D000458 ORTHO05D006287 8.5e-06 54.3 43 72.1
PSO017G5303 Papaver somniferum HOM05D000458 ORTHO05D006287 8.5e-06 54.3 43 72.1


User provided reference genes

Program Settings