Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30121 Davidia involucrata HOM05D007517 ORTHO05D006922 1.0e-60 236.5 115 100.0
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 3.7e-34 148.3 92 85.9
Rhsim05G0176100 Rhododendron simsii HOM05D007517 ORTHO05D006922 1.6e-21 106.3 94 62.8
Potri.019G013000 Populus trichocarpa HOM05D007517 ORTHO05D006922 5.1e-20 101.3 94 64.9
Rhsim05G0177900 Rhododendron simsii HOM05D007517 ORTHO05D006922 4.3e-19 98.2 94 62.8
Cpa.g.sc162.5 Carica papaya HOM05D007517 ORTHO05D006922 7.4e-19 97.4 96 57.3
Potri.013G043600 Populus trichocarpa HOM05D007517 ORTHO05D006922 4.1e-17 91.7 94 58.5
CAN.G1256.1 Capsicum annuum HOM05D014319 ORTHO05D006922 1.0e-15 87.0 93 54.8
Potri.019G012700 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.0e-15 87.0 94 57.4
Sabra13G0040000 Salix brachista HOM05D007517 ORTHO05D006922 1.3e-15 86.7 93 54.8
Sabra13G0040100 Salix brachista HOM05D007517 ORTHO05D006922 1.3e-15 86.7 93 54.8
Sabra13G0040200 Salix brachista HOM05D007517 ORTHO05D006922 1.3e-15 86.7 93 54.8
Sabra13G0040300 Salix brachista HOM05D007517 ORTHO05D006922 1.3e-15 86.7 93 54.8
Potri.019G012400 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.7e-15 86.3 95 57.9
Sabra13G0039900 Salix brachista HOM05D007517 ORTHO05D006922 1.7e-15 86.3 93 54.8
Gohir.A13G169025 Gossypium hirsutum HOM05D007517 ORTHO05D006922 2.9e-15 85.5 93 51.6
Oeu016033.1 Olea europaea HOM05D014319 ORTHO05D006922 8.5e-15 84.0 88 54.5
Dinv44645 Davidia involucrata HOM05D007517 ORTHO05D006922 1.4e-14 83.2 93 54.8
Gorai.013G186200 Gossypium raimondii HOM05D007517 ORTHO05D006922 1.4e-14 83.2 94 51.1
Lalb_Chr21g0311071 Lupinus albus HOM05D007517 ORTHO05D006922 1.9e-14 82.8 82 53.7
Gohir.A08G216801 Gossypium hirsutum HOM05D007517 ORTHO05D006922 7.2e-14 80.9 79 54.4
Atru.chr2.873 Acer truncatum HOM05D007517 ORTHO05D006922 1.2e-13 80.1 71 62.0
COL.COLO4_15407 Corchorus olitorius HOM05D007517 ORTHO05D006922 1.6e-13 79.7 104 49.0
Peaxi162Scf00519g00016 Petunia axillaris HOM05D014319 ORTHO05D006922 1.6e-13 79.7 93 48.4
Potri.019G012900 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.6e-13 79.7 94 53.2
Atru.chr5.1625 Acer truncatum HOM05D007517 ORTHO05D006922 3.6e-13 78.6 88 52.3
Lj1g0011629 Lotus japonicus HOM05D007517 ORTHO05D006922 6.1e-13 77.8 85 50.6
Potri.019G012702 Populus trichocarpa HOM05D007517 ORTHO05D006922 6.1e-13 77.8 94 52.1
Sc05g0000830 Simmondsia chinensis HOM05D007517 ORTHO05D006922 6.1e-13 77.8 96 46.9
Potri.019G012601 Populus trichocarpa HOM05D007517 ORTHO05D006922 2.3e-12 75.9 94 55.3
Thecc.05G277600 Theobroma cacao HOM05D007517 ORTHO05D006922 2.3e-12 75.9 68 58.8
Gohir.D08G233850 Gossypium hirsutum HOM05D007517 ORTHO05D006922 3.0e-12 75.5 79 51.9
Gorai.004G248500 Gossypium raimondii HOM05D007517 ORTHO05D006922 3.0e-12 75.5 79 51.9
Atru.chr2.879 Acer truncatum HOM05D007517 ORTHO05D006922 3.9e-12 75.1 81 55.6
Sopen11g002160 Solanum pennellii HOM05D014319 ORTHO05D006922 3.9e-12 75.1 112 45.5
Sabra19G0025500 Salix brachista HOM05D007517 ORTHO05D006922 8.8e-12 73.9 94 51.1
TWI12G0979 Tripterygium wilfordii HOM05D007517 ORTHO05D006922 8.8e-12 73.9 54 70.4
Thecc.01G263600 Theobroma cacao HOM05D007517 ORTHO05D006922 1.1e-11 73.6 93 51.6
Sabra19G0025300 Salix brachista HOM05D007517 ORTHO05D006922 2.0e-11 72.8 80 52.5
Atru.chr2.874 Acer truncatum HOM05D007517 ORTHO05D006922 2.5e-11 72.4 67 59.7
Nitab4.5_0005247g0020 Nicotiana tabacum HOM05D014319 ORTHO05D006922 2.5e-11 72.4 99 47.5
FAN02G2589 Fragaria x ananassa HOM05D017677 ORTHO05D006922 3.3e-11 72.0 91 48.4
FvH4_6g02480 Fragaria vesca HOM05D017677 ORTHO05D006922 4.3e-11 71.6 91 48.4
FAN14G2793 Fragaria x ananassa HOM05D017677 ORTHO05D006922 4.3e-11 71.6 91 48.4
FAN05G1682 Fragaria x ananassa HOM05D017677 ORTHO05D006922 5.7e-11 71.2 92 47.8
FAN05G2017 Fragaria x ananassa HOM05D017677 ORTHO05D006922 5.7e-11 71.2 92 47.8
Solyc11g006240.2 Solanum lycopersicum HOM05D014319 ORTHO05D006922 5.7e-11 71.2 93 47.3
CiPaw.03G260800 Carya illinoinensis HOM05D007517 ORTHO05D006922 9.7e-11 70.5 85 48.2
Migut.F00819 Erythranthe guttata HOM05D014319 ORTHO05D006922 9.7e-11 70.5 70 58.6
Sabra19G0025700 Salix brachista HOM05D007517 ORTHO05D006922 9.7e-11 70.5 94 47.9
Aqoxy5G00299 Aquilegia oxysepala HOM05D007517 ORTHO05D006922 1.3e-10 70.1 80 52.5
PGSC0003DMG400000987 Solanum tuberosum HOM05D014319 ORTHO05D006922 1.3e-10 70.1 114 45.6
Duzib133G0625 Durio zibethinus HOM05D007517 ORTHO05D006922 2.8e-10 68.9 92 48.9
Gohir.D08G070066 Gossypium hirsutum HOM05D007517 ORTHO05D006922 2.8e-10 68.9 81 49.4
Gorai.004G073800 Gossypium raimondii HOM05D007517 ORTHO05D006922 2.8e-10 68.9 81 49.4
FAN09G4351 Fragaria x ananassa HOM05D017677 ORTHO05D006922 3.7e-10 68.6 92 47.8
FAN14G4694 Fragaria x ananassa HOM05D017677 ORTHO05D006922 3.7e-10 68.6 87 48.3
Glyma.03G248900 Glycine max HOM05D007517 ORTHO05D006922 3.7e-10 68.6 76 52.6
Glyma.20G226400 Glycine max HOM05D007517 ORTHO05D006922 3.7e-10 68.6 65 56.9
Gohir.A08G060866 Gossypium hirsutum HOM05D007517 ORTHO05D006922 4.8e-10 68.2 81 49.4
Glyma.10G164000 Glycine max HOM05D007517 ORTHO05D006922 1.4e-09 66.6 65 55.4
Gohir.D11G134500 Gossypium hirsutum HOM05D007517 ORTHO05D006922 1.4e-09 66.6 92 48.9
Gorai.007G143900 Gossypium raimondii HOM05D007517 ORTHO05D006922 1.4e-09 66.6 92 48.9
COL.COLO4_05587 Corchorus olitorius HOM05D007517 ORTHO05D006922 2.4e-09 65.9 85 48.2
Glyma.19G246500 Glycine max HOM05D007517 ORTHO05D006922 2.4e-09 65.9 86 47.7
Gohir.A11G128700 Gossypium hirsutum HOM05D007517 ORTHO05D006922 2.4e-09 65.9 92 50.0
Potri.002G041950 Populus trichocarpa HOM05D007517 ORTHO05D006922 2.4e-09 65.9 95 50.5
Nn3g19573 Nelumbo nucifera HOM05D007967 ORTHO05D008195 5.3e-09 64.7 75 45.3
QL10p016371 Quercus lobata HOM05D007517 ORTHO05D006922 5.3e-09 64.7 45 68.9
QL10p016395 Quercus lobata HOM05D007517 ORTHO05D006922 5.3e-09 64.7 45 68.9
CsaV3_2G003890 Cucumis sativus L. HOM05D017963 ORTHO05D020474 9.1e-09 63.9 91 42.9
Atru.chr2.872 Acer truncatum HOM05D007517 ORTHO05D006922 1.2e-08 63.5 61 54.1
Cfa002378 Carpinus fangiana HOM05D007517 ORTHO05D006922 1.2e-08 63.5 46 71.7
CiPaw.01G189400 Carya illinoinensis HOM05D007967 ORTHO05D008195 1.2e-08 63.5 74 47.3
DCAR_002342 Daucus carota HOM05D007517 ORTHO05D006922 1.2e-08 63.5 70 54.3
Potri.001G380300 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.2e-08 63.5 95 49.5
ClCG07G000800 Citrullus lanatus HOM05D007517 ORTHO05D006922 1.5e-08 63.2 94 45.7
QL10p016326 Quercus lobata HOM05D007517 ORTHO05D006922 1.5e-08 63.2 45 66.7
ClCG02G016880 Citrullus lanatus HOM05D017963 ORTHO05D020474 2.6e-08 62.4 91 44.0
Sed0019282 Sechium edule HOM05D017963 ORTHO05D020474 3.4e-08 62.0 94 44.7
ATR0665G553 Amborella trichopoda HOM05D007967 ORTHO05D008195 4.5e-08 61.6 89 49.4
Haze_24578 Corylus avellana HOM05D007517 ORTHO05D006922 4.5e-08 61.6 48 68.8
Sabra05G0170200 Salix brachista HOM05D007517 ORTHO05D006922 5.9e-08 61.2 93 48.4
Manes.03G168400 Manihot esculenta HOM05D007517 ORTHO05D006922 7.7e-08 60.8 69 46.4
MELO3C004406.2 Cucumis melo HOM05D017963 ORTHO05D020474 1.0e-07 60.5 83 43.4
Potri.005G221200 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.0e-07 60.5 92 44.6
Duzib138G0038 Durio zibethinus HOM05D007517 ORTHO05D006922 1.3e-07 60.1 93 46.2
Medtr7g115360 Medicago truncatula HOM05D007517 ORTHO05D006922 1.3e-07 60.1 69 46.4
Sed0018312 Sechium edule HOM05D007517 ORTHO05D006922 1.3e-07 60.1 85 45.9
ClCG07G000810 Citrullus lanatus HOM05D007517 ORTHO05D006922 1.7e-07 59.7 64 53.1
Potri.008G160650 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.7e-07 59.7 80 51.2
Potri.010G075133 Populus trichocarpa HOM05D007517 ORTHO05D006922 1.7e-07 59.7 103 39.8
EL10Ac5g10433 Beta vulgaris HOM05D050946 ORTHO05D006922 2.2e-07 59.3 66 53.0
Phvul.007G189000 Phaseolus vulgaris HOM05D007517 ORTHO05D006922 2.2e-07 59.3 63 50.8
QL10p016305 Quercus lobata HOM05D007517 ORTHO05D006922 2.2e-07 59.3 45 66.7
Sed0006980 Sechium edule HOM05D017963 ORTHO05D020474 2.2e-07 59.3 115 39.1
TAR636G0109 Trochodendron aralioides HOM05D007967 ORTHO05D008195 2.2e-07 59.3 69 50.7
Sed0014661 Sechium edule HOM05D007517 ORTHO05D006922 2.9e-07 58.9 76 47.4
COL.COLO4_15804 Corchorus olitorius HOM05D007967 ORTHO05D008195 3.8e-07 58.5 81 45.7
Sed0011700 Sechium edule HOM05D007517 ORTHO05D006922 5.0e-07 58.2 73 47.9
TAR406G0009 Trochodendron aralioides HOM05D007967 ORTHO05D008195 5.0e-07 58.2 51 56.9
DCAR_002343 Daucus carota HOM05D007517 ORTHO05D006922 6.5e-07 57.8 75 49.3
TAR362G0007 Trochodendron aralioides HOM05D007967 ORTHO05D008195 6.5e-07 57.8 81 39.5
Manes.03G168300 Manihot esculenta HOM05D007967 ORTHO05D008195 8.5e-07 57.4 81 43.2
Manes.15G037400 Manihot esculenta HOM05D007967 ORTHO05D008195 8.5e-07 57.4 67 46.3
Oeu008800.1 Olea europaea HOM05D007517 ORTHO05D008195 1.1e-06 57.0 94 44.7
Phvul.006G103600 Phaseolus vulgaris HOM05D007517 ORTHO05D006922 1.4e-06 56.6 47 59.6
Cfa008369 Carpinus fangiana HOM05D007967 ORTHO05D008195 1.9e-06 56.2 79 44.3
Cfa002385 Carpinus fangiana HOM05D013698 ORTHO05D008195 3.2e-06 55.5 90 40.0
MELO3C024042.2 Cucumis melo HOM05D007517 ORTHO05D006922 3.2e-06 55.5 54 57.4
TPR.G27065 Trifolium pratense HOM05D007517 ORTHO05D006922 3.2e-06 55.5 72 48.6
Nitab4.5_0006331g0020 Nicotiana tabacum HOM05D014319 ORTHO05D006922 4.2e-06 55.1 54 57.4
Potri.010G075100 Populus trichocarpa HOM05D007967 ORTHO05D008195 4.2e-06 55.1 82 45.1
FvH4_4g02960 Fragaria vesca HOM05D007967 ORTHO05D008195 5.5e-06 54.7 65 41.5
FAN12G4039 Fragaria x ananassa HOM05D007967 ORTHO05D008195 5.5e-06 54.7 65 41.5
Cfa008371 Carpinus fangiana HOM05D007967 ORTHO05D008195 7.2e-06 54.3 83 41.0
Nitab4.5_0003721g0040 Nicotiana tabacum HOM05D007967 ORTHO05D008195 7.2e-06 54.3 69 43.5
TWI12G0012 Tripterygium wilfordii HOM05D007967 ORTHO05D008195 7.2e-06 54.3 66 51.5
Migut.G00444 Erythranthe guttata HOM05D007967 ORTHO05D008195 9.4e-06 53.9 60 53.3
Medtr1g080510 Medicago truncatula HOM05D007517 ORTHO05D006922 9.4e-06 53.9 59 47.5
Sed0007048 Sechium edule HOM05D017963 ORTHO05D020474 9.4e-06 53.9 69 47.8


User provided reference genes

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