Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.8e-205 718.4 369 100.0
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 2.3e-186 655.6 367 90.7
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.4e-167 592.4 368 80.7
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.8e-166 587.8 368 80.2
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.7e-165 586.3 367 79.0
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.7e-163 578.9 380 76.3
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 6.9e-159 564.3 366 78.7
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.1e-152 542.7 367 75.5
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-148 530.4 371 73.9
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.4e-148 530.0 364 73.1
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.4e-148 529.3 364 72.8
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.2e-148 528.9 364 72.8
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 4.6e-147 525.0 366 70.8
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.0e-146 523.9 369 70.2
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 6.7e-146 521.2 366 71.3
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.6e-144 516.5 366 68.9
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 2.1e-144 516.2 365 71.5
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 2.4e-143 512.7 364 70.9
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 5.3e-143 511.5 365 69.0
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 9.0e-143 510.8 367 70.3
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 4.5e-142 508.4 365 69.3
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 7.6e-142 507.7 367 68.1
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 9.9e-142 507.3 367 67.8
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 2.9e-141 505.8 367 67.6
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.9e-141 505.8 365 71.0
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 6.4e-141 504.6 367 68.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.1e-140 503.8 319 79.9
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.4e-140 503.4 367 67.8
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 3.5e-139 498.8 364 67.9
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 3.5e-139 498.8 364 67.9
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.0e-138 497.3 364 67.9
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.8e-138 496.5 368 68.2
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 5.1e-138 495.0 366 69.9
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 5.6e-137 491.5 366 66.7
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 5.6e-137 491.5 364 70.6
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 5.6e-137 491.5 364 67.3
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 4.8e-136 488.4 366 67.5
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 8.2e-136 487.6 369 68.0
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 8.2e-136 487.6 381 64.6
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.4e-135 486.1 364 68.1
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.7e-133 479.9 365 68.5
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.7e-133 479.9 364 67.0
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.2e-133 479.6 364 69.0
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 4.2e-132 475.3 364 67.6
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.1e-131 473.0 331 70.4
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.7e-131 472.6 367 64.6
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 8.7e-130 467.6 366 64.5
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.9e-129 466.5 366 63.1
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.5e-129 466.1 386 62.4
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 5.7e-129 464.9 365 66.0
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 9.7e-129 464.2 366 63.9
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 2.8e-128 462.6 364 65.9
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 4.8e-128 461.8 368 63.6
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 6.3e-128 461.5 366 63.7
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 6.3e-128 461.5 365 64.7
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.8e-127 459.9 392 59.7
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 6.9e-127 458.0 366 63.7
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.5e-126 456.8 367 64.3
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.5e-126 456.8 315 73.3
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.7e-125 453.4 366 62.8
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 2.9e-125 452.6 366 62.6
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 3.2e-124 449.1 365 62.5
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.2e-124 448.7 364 64.6
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.2e-123 447.2 364 64.6
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 2.7e-123 446.0 364 64.3
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 6.1e-123 444.9 365 61.9
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 7.9e-123 444.5 365 62.2
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.4e-122 443.7 371 62.5
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 3.0e-122 442.6 365 61.6
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 1.1e-121 440.7 367 62.1
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.3e-120 437.2 315 72.4
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.7e-120 436.8 365 61.6
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.2e-120 436.4 365 60.8
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 2.8e-120 436.0 365 60.8
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.7e-120 435.6 363 63.4
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.1e-119 434.1 366 60.7
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.8e-119 433.3 367 59.1
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.2e-118 430.6 370 60.3
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.5e-118 430.3 365 63.3
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 2.6e-118 429.5 367 60.5
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 1.0e-117 427.6 368 60.1
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 3.8e-117 425.6 404 55.9
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.8e-117 425.6 367 59.7
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 6.5e-117 424.9 403 56.6
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 8.5e-117 424.5 364 61.3
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.5e-117 424.5 380 59.5
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.1e-116 424.1 364 62.1
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.9e-116 423.3 365 59.2
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 5.5e-116 421.8 366 59.3
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 1.2e-115 420.6 367 57.8
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.6e-115 420.2 366 57.9
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.4e-114 417.2 316 66.5
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 6.7e-114 414.8 480 49.6
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 8.8e-114 414.5 371 58.5
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.1e-113 414.1 365 59.2
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 2.0e-113 413.3 371 58.8
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 4.4e-113 412.1 363 59.5
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 5.7e-113 411.8 366 57.7
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.7e-112 410.2 366 57.7
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.4e-111 407.1 367 58.6
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.8e-111 406.8 366 58.2
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 2.4e-111 406.4 365 58.9
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.1e-111 405.6 369 57.7
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 7.0e-111 404.8 366 57.7
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 2.6e-110 402.9 502 47.0
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.0e-109 401.0 402 52.7
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.2e-109 399.8 365 57.5
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.8e-109 399.1 364 57.1
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 6.5e-109 398.3 376 56.6
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.4e-108 397.1 363 58.4
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.9e-108 396.7 400 53.0
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 5.5e-108 395.2 353 57.5
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 9.4e-108 394.4 312 65.1
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-106 390.6 366 58.2
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 3.0e-106 389.4 350 58.6
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 4.4e-105 385.6 353 58.1
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 7.4e-105 384.8 563 44.8
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.7e-104 383.6 353 57.8
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 2.2e-104 383.3 366 56.6
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 2.2e-104 383.3 354 57.9
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 6.3e-104 381.7 353 57.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.4e-103 380.6 281 65.5
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 3.1e-103 379.4 478 46.0
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 6.5e-101 371.7 290 64.1
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 2.5e-100 369.8 365 52.9
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.4e-98 364.0 369 53.1
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 6.8e-98 361.7 313 62.0
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 8.3e-96 354.8 313 59.4
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.8e-95 353.6 366 52.2
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-88 330.9 204 82.8
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.3e-88 328.6 204 82.4
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.0e-87 325.1 210 79.0
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.1e-83 313.5 301 56.5
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.1e-83 313.5 313 55.3
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.8e-79 300.4 207 72.0
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.5e-76 290.8 313 53.0
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 4.3e-76 289.3 210 68.6
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.6e-76 288.9 230 63.5
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.1e-75 287.0 316 49.1
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 9.8e-73 278.1 201 70.1
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.9e-72 276.6 166 83.1
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.6e-69 265.0 162 81.5
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.6e-69 265.0 207 66.2
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.2e-67 261.2 374 40.1
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-66 258.1 164 78.0
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.2e-65 254.6 164 78.0
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.5e-65 254.2 164 78.0
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.6e-65 253.4 164 77.4
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.1e-62 243.8 167 74.3
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.7e-61 240.7 189 68.3
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.5e-60 237.7 339 40.1
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 8.1e-59 231.9 164 73.2
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.4e-57 226.1 374 38.8
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 7.6e-57 225.3 202 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.9e-56 223.4 379 36.9
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 3.7e-56 223.0 284 46.8
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.1e-55 221.5 371 37.5
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 4.1e-55 219.5 365 36.2
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.2e-54 218.0 371 36.9
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 3.5e-54 216.5 164 68.3
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 6.0e-54 215.7 192 58.9
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.9e-53 213.0 156 64.1
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 5.6e-52 209.1 156 62.8
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 3.5e-46 189.9 374 33.4
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-44 184.9 152 66.4
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 5.6e-44 182.6 133 65.4
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-42 178.3 110 80.9
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-42 178.3 121 72.7
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 4.0e-42 176.4 124 67.7
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 1.4e-39 167.9 136 63.2
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 3.2e-39 166.8 136 61.8
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 7.1e-39 165.6 257 38.9
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 5.1e-37 159.5 172 49.4
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 3.0e-29 133.7 128 51.6
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.8e-19 100.5 262 29.8
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 3.1e-18 97.1 305 28.5
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 2.5e-07 60.8 375 24.3


User provided reference genes

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