Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 5.4e-58 227.6 132 100.0
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 5.3e-21 104.8 53 92.5
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 1.3e-19 100.1 53 86.8
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 1.7e-19 99.8 53 84.9
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 2.2e-19 99.4 53 86.8
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 5.0e-19 98.2 53 84.9
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 1.1e-18 97.1 53 84.9
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 1.9e-18 96.3 53 83.0
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 3.2e-18 95.5 53 84.9
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 5.5e-18 94.7 53 81.1
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 7.2e-18 94.4 53 84.9
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 7.2e-18 94.4 53 84.9
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 9.4e-18 94.0 53 81.1
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 9.4e-18 94.0 53 77.4
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 1.2e-17 93.6 53 81.1
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 1.6e-17 93.2 53 79.2
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 2.1e-17 92.8 53 79.2
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 2.1e-17 92.8 51 82.4
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 2.1e-17 92.8 55 81.8
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 2.1e-17 92.8 53 81.1
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 3.6e-17 92.0 53 81.1
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 3.6e-17 92.0 53 81.1
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 3.6e-17 92.0 53 81.1
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 4.7e-17 91.7 53 75.5
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 4.7e-17 91.7 53 75.5
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 4.7e-17 91.7 53 75.5
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 6.1e-17 91.3 53 77.4
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 6.1e-17 91.3 53 79.2
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 6.1e-17 91.3 53 75.5
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 8.0e-17 90.9 52 78.8
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 8.0e-17 90.9 52 78.8
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 8.0e-17 90.9 55 81.8
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 8.0e-17 90.9 51 78.4
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 8.0e-17 90.9 53 77.4
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 1.0e-16 90.5 53 75.5
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 1.0e-16 90.5 53 77.4
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 1.0e-16 90.5 53 75.5
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 1.4e-16 90.1 51 78.4
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 1.4e-16 90.1 53 75.5
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.4e-16 90.1 53 75.5
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.4e-16 90.1 53 75.5
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.4e-16 90.1 53 75.5
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.4e-16 90.1 53 75.5
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.4e-16 90.1 53 75.5
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 1.8e-16 89.7 53 75.5
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 1.8e-16 89.7 50 80.0
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 1.8e-16 89.7 53 73.6
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 2.3e-16 89.4 53 75.5
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 2.3e-16 89.4 53 73.6
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 2.3e-16 89.4 53 75.5
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 2.3e-16 89.4 53 75.5
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 2.3e-16 89.4 53 75.5
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 2.3e-16 89.4 53 75.5
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 2.3e-16 89.4 53 77.4
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 3.0e-16 89.0 53 73.6
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 3.9e-16 88.6 55 80.0
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 3.9e-16 88.6 53 73.6
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 5.2e-16 88.2 53 75.5
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 5.2e-16 88.2 53 71.7
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 5.2e-16 88.2 53 71.7
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 5.2e-16 88.2 53 77.4
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 5.2e-16 88.2 50 78.0
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 6.7e-16 87.8 53 73.6
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 6.7e-16 87.8 53 77.4
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 6.7e-16 87.8 53 69.8
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 8.8e-16 87.4 53 75.5
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 8.8e-16 87.4 53 75.5
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 8.8e-16 87.4 53 73.6
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 8.8e-16 87.4 53 73.6
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 1.1e-15 87.0 52 78.8
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 1.5e-15 86.7 50 76.0
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 2.0e-15 86.3 53 73.6
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 2.0e-15 86.3 53 77.4
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 3.3e-15 85.5 53 69.8
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 3.3e-15 85.5 53 69.8
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 3.3e-15 85.5 53 69.8
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 3.3e-15 85.5 53 69.8
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 3.3e-15 85.5 53 71.7
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 3.3e-15 85.5 52 75.0
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 4.4e-15 85.1 53 71.7
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 4.4e-15 85.1 53 69.8
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 4.4e-15 85.1 50 74.0
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 4.4e-15 85.1 50 76.0
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.4e-15 85.1 52 73.1
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 5.7e-15 84.7 51 76.5
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 5.7e-15 84.7 53 69.8
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 5.7e-15 84.7 53 73.6
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 9.7e-15 84.0 53 69.8
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 9.7e-15 84.0 53 69.8
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 1.3e-14 83.6 53 71.7
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 1.3e-14 83.6 53 71.7
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 2.2e-14 82.8 53 67.9
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 2.2e-14 82.8 53 67.9
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 2.2e-14 82.8 53 67.9
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 4.8e-14 81.6 51 70.6
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 6.3e-14 81.3 51 68.6
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 3.1e-13 79.0 51 68.6
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 5.9e-12 74.7 51 70.6
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 7.7e-12 74.3 51 68.6
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 1.7e-11 73.2 53 64.2
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 3.8e-11 72.0 50 66.0
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 8.5e-11 70.9 53 60.4
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.1e-10 70.5 48 60.4
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 4.7e-09 65.1 49 59.2
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 1.0e-08 63.9 53 54.7
Dinv34295 Davidia involucrata HOM05D004911 ORTHO05D179019 3.0e-08 62.4 69 78.3
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 3.0e-08 62.4 42 64.3


User provided reference genes

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