Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29830 Davidia involucrata HOM05D002618 ORTHO05D002753 2.1e-69 265.8 152 100.0
CiPaw.02G108800 Carya illinoinensis HOM05D002618 ORTHO05D002753 3.0e-20 102.4 144 48.6
Oeu014753.1 Olea europaea HOM05D002618 ORTHO05D002753 3.0e-20 102.4 121 56.2
Rhsim02G0042100 Rhododendron simsii HOM05D002618 ORTHO05D002753 3.4e-19 99.0 119 56.3
SalBow3G2216 Salvia bowleyana HOM05D002618 ORTHO05D002753 9.8e-19 97.4 117 53.8
SGA_v2.0_scaffold498G52476 Striga asiatica HOM05D002618 ORTHO05D002753 9.8e-19 97.4 127 48.8
Migut.N00288 Erythranthe guttata HOM05D002618 ORTHO05D002753 2.8e-18 95.9 122 57.4
Haze_11425 Corylus avellana HOM05D002618 ORTHO05D002753 4.9e-18 95.1 144 47.2
GSVIVG01027861001 Vitis vinifera HOM05D002618 ORTHO05D002753 8.3e-18 94.4 104 57.7
MSTRG.4152 Avicennia marina HOM05D002618 ORTHO05D002753 1.4e-17 93.6 116 50.9
Potri.010G068800 Populus trichocarpa HOM05D002618 ORTHO05D002753 1.8e-17 93.2 138 44.9
Sabra10G0038200 Salix brachista HOM05D002618 ORTHO05D002753 3.1e-17 92.4 138 46.4
Dinv27082 Davidia involucrata HOM05D002618 ORTHO05D002753 4.1e-17 92.0 126 54.8
MSTRG.24669 Avicennia marina HOM05D002618 ORTHO05D002753 5.4e-17 91.7 122 50.8
Thecc.04G259700 Theobroma cacao HOM05D002618 ORTHO05D002753 5.4e-17 91.7 115 49.6
QL06p019928 Quercus lobata HOM05D002618 ORTHO05D002753 7.0e-17 91.3 144 51.4
CANSAT56G2256 Cannabis sativa HOM05D002618 ORTHO05D002753 9.2e-17 90.9 142 45.1
TAR362G0858 Trochodendron aralioides HOM05D002618 ORTHO05D002753 2.0e-16 89.7 109 56.9
Lj6P625T16 Lonicera japonica HOM05D002618 ORTHO05D002753 2.7e-16 89.4 137 43.8
Lj6P626T15 Lonicera japonica HOM05D002618 ORTHO05D002753 2.7e-16 89.4 137 43.8
CSS0032980 Camellia sinensis var. sinensis HOM05D002618 ORTHO05D002753 3.5e-16 89.0 142 45.1
TAR633G1023 Trochodendron aralioides HOM05D002618 ORTHO05D002753 4.5e-16 88.6 125 47.2
Duzib052G0662 Durio zibethinus HOM05D002618 ORTHO05D002753 3.8e-15 85.5 131 46.6
Duzib151G1024 Durio zibethinus HOM05D002618 ORTHO05D002753 6.6e-15 84.7 112 49.1
Oeu024801.1 Olea europaea HOM05D002618 ORTHO05D002753 3.3e-14 82.4 116 47.4
Manes.13G037700 Manihot esculenta HOM05D002618 ORTHO05D002753 4.3e-14 82.0 136 43.4
SGA_v2.0_scaffold31G12653 Striga asiatica HOM05D002618 ORTHO05D002753 4.3e-14 82.0 155 42.6
Hma1.2p1_1112F.1_g258510 Hydrangea macrophylla HOM05D002618 ORTHO05D002753 7.3e-14 81.3 100 48.0
Manes.03G161900 Manihot esculenta HOM05D002618 ORTHO05D002753 1.6e-13 80.1 139 42.4
CiPaw.01G181000 Carya illinoinensis HOM05D002618 ORTHO05D002753 2.1e-13 79.7 143 44.1
Lj2P1145T15 Lonicera japonica HOM05D002618 ORTHO05D002753 2.1e-13 79.7 83 54.2
Lj2P1146T14 Lonicera japonica HOM05D002618 ORTHO05D002753 2.1e-13 79.7 83 54.2
vmacro15462 Vaccinium macrocarpon HOM05D002618 ORTHO05D002753 2.1e-13 79.7 85 55.3
Gohir.D02G046700 Gossypium hirsutum HOM05D002618 ORTHO05D002753 2.8e-13 79.3 84 53.6
TAR365G0501 Trochodendron aralioides HOM05D002618 ORTHO05D002753 2.8e-13 79.3 108 50.0
PGR031G1536 Punica granatum HOM05D002618 ORTHO05D002753 3.6e-13 79.0 151 41.7
CANSAT78G1482 Cannabis sativa HOM05D002618 ORTHO05D002753 4.7e-13 78.6 146 39.7
Gorai.005G051600 Gossypium raimondii HOM05D002618 ORTHO05D002753 6.1e-13 78.2 111 46.8
COL.COLO4_15925 Corchorus olitorius HOM05D002618 ORTHO05D002753 8.0e-13 77.8 149 41.6
Haze_24668 Corylus avellana HOM05D002618 ORTHO05D002753 1.0e-12 77.4 139 41.7
Actinidia37534 Actinidia chinensis HOM05D002618 ORTHO05D002753 1.4e-12 77.0 119 44.5
Nn3g19727 Nelumbo nucifera HOM05D002618 ORTHO05D002753 2.3e-12 76.3 96 46.9
CSS0047601 Camellia sinensis var. sinensis HOM05D002618 ORTHO05D002753 3.0e-12 75.9 152 38.2
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 4.0e-12 75.5 116 45.7
Dinv34654 Davidia involucrata HOM05D002618 ORTHO05D002753 5.2e-12 75.1 147 37.4
Gorai.006G252200 Gossypium raimondii HOM05D002618 ORTHO05D002753 5.2e-12 75.1 114 46.5
TWI73G0394 Tripterygium wilfordii HOM05D002618 ORTHO05D002753 5.2e-12 75.1 148 39.2
TWI09G0350 Tripterygium wilfordii HOM05D002618 ORTHO05D002753 8.9e-12 74.3 148 42.6
TAR636G2463 Trochodendron aralioides HOM05D002618 ORTHO05D002753 8.9e-12 74.3 85 48.2
Gohir.A09G228400 Gossypium hirsutum HOM05D002618 ORTHO05D002753 1.5e-11 73.6 119 43.7
Manes.12G034900 Manihot esculenta HOM05D002618 ORTHO05D002753 2.6e-11 72.8 136 40.4
Haze_24673 Corylus avellana HOM05D002618 ORTHO05D002753 5.7e-11 71.6 138 40.6
Nn1g02848 Nelumbo nucifera HOM05D002618 ORTHO05D002753 5.7e-11 71.6 129 41.1
CiPaw.04G188700 Carya illinoinensis HOM05D002618 ORTHO05D002753 1.3e-10 70.5 145 39.3
Eucgr.H00138 Eucalyptus grandis HOM05D002618 ORTHO05D002753 1.3e-10 70.5 169 38.5
Gohir.D09G229500 Gossypium hirsutum HOM05D002618 ORTHO05D002753 2.9e-10 69.3 149 37.6
Actinidia39915 Actinidia chinensis HOM05D002618 ORTHO05D002753 3.7e-10 68.9 102 44.1
Hma1.2p1_0273F.1_g109390 Hydrangea macrophylla HOM05D002618 ORTHO05D002753 3.7e-10 68.9 117 41.9
Prupe.1G044300 Prunus persica HOM05D002618 ORTHO05D002753 3.7e-10 68.9 147 40.1
Rhsim01G0261600 Rhododendron simsii HOM05D002618 ORTHO05D002753 4.9e-10 68.6 125 43.2
Cpa.g.sc165.38 Carica papaya HOM05D002618 ORTHO05D002753 6.4e-10 68.2 104 41.3
CsaV3_3G011900 Cucumis sativus L. HOM05D002618 ORTHO05D002753 8.3e-10 67.8 118 43.2
Actinidia11360 Actinidia chinensis HOM05D002618 ORTHO05D002753 1.4e-09 67.0 62 54.8
Sed0009787 Sechium edule HOM05D002618 ORTHO05D002753 1.4e-09 67.0 106 40.6
Atru.chr4.1999 Acer truncatum HOM05D002618 ORTHO05D002753 1.8e-09 66.6 139 40.3
Lsat_1_v5_gn_5_182541 Lactuca sativa HOM05D002618 ORTHO05D002753 3.2e-09 65.9 81 46.9
MBI07_g31317_MAGBIO Magnolia biondii HOM05D002618 ORTHO05D002753 3.2e-09 65.9 114 39.5
unitig_899.g15638 Utricularia gibba HOM05D002618 ORTHO05D002753 4.1e-09 65.5 119 41.2
MD13G1217500 Malus domestica HOM05D002618 ORTHO05D002753 7.0e-09 64.7 140 39.3
Oeu055462.1 Olea europaea HOM05D002618 ORTHO05D002753 7.0e-09 64.7 115 38.3
Sed0001290 Sechium edule HOM05D002618 ORTHO05D002753 7.0e-09 64.7 114 43.9
Ciclev10006128m.g Citrus clementina HOM05D002618 ORTHO05D002753 1.2e-08 63.9 88 45.5
COL.COLO4_20570 Corchorus olitorius HOM05D002618 ORTHO05D002753 1.2e-08 63.9 95 43.2
Sopen09g033290 Solanum pennellii HOM05D002618 ORTHO05D002753 1.2e-08 63.9 149 36.9
MELO3C006402.2 Cucumis melo HOM05D002618 ORTHO05D002753 1.6e-08 63.5 118 40.7
Eucgr.H03014 Eucalyptus grandis HOM05D002618 ORTHO05D002753 1.6e-08 63.5 83 56.6
Solyc09g090380.1 Solanum lycopersicum HOM05D002618 ORTHO05D002753 1.6e-08 63.5 150 36.7
unitig_748.g7332 Utricularia gibba HOM05D002618 ORTHO05D002753 1.6e-08 63.5 122 38.5
Manes.12G034600 Manihot esculenta HOM05D002618 ORTHO05D002753 2.0e-08 63.2 147 36.7
Gohir.D11G138300 Gossypium hirsutum HOM05D002618 ORTHO05D002753 3.5e-08 62.4 120 40.8
Gorai.007G148300 Gossypium raimondii HOM05D002618 ORTHO05D002753 3.5e-08 62.4 120 40.8
HanXRQChr05g0160751 Helianthus annuus HOM05D002618 ORTHO05D002753 3.5e-08 62.4 83 45.8
Atru.chr5.1780 Acer truncatum HOM05D002618 ORTHO05D002753 4.6e-08 62.0 136 36.0
Gohir.A11G132200 Gossypium hirsutum HOM05D002618 ORTHO05D002753 5.9e-08 61.6 122 41.0
Potri.002G259400 Populus trichocarpa HOM05D002618 ORTHO05D002753 5.9e-08 61.6 112 41.1
Cfa002461 Carpinus fangiana HOM05D002618 ORTHO05D002753 7.8e-08 61.2 149 36.9
Lalb_Chr21g0312201 Lupinus albus HOM05D002618 ORTHO05D002753 1.0e-07 60.8 145 33.1
TWI12G1148 Tripterygium wilfordii HOM05D002618 ORTHO05D002753 1.3e-07 60.5 113 39.8
Phvul.007G190700 Phaseolus vulgaris HOM05D002618 ORTHO05D002753 1.7e-07 60.1 114 36.0
AUR62002169 Chenopodium quinoa HOM05D002618 ORTHO05D002753 2.3e-07 59.7 33 84.8
Sp1g02840 Schrenkiella parvula HOM05D002618 ORTHO05D002753 2.3e-07 59.7 111 45.0
Aqoxy2G03709 Aquilegia oxysepala HOM05D002618 ORTHO05D002753 3.0e-07 59.3 107 39.3
CDE08G0991 Ceratophyllum demersum HOM05D002618 ORTHO05D002753 3.9e-07 58.9 85 42.4
Sabra02G0197400 Salix brachista HOM05D002618 ORTHO05D002753 3.9e-07 58.9 114 36.8
TWI18G0712 Tripterygium wilfordii HOM05D002618 ORTHO05D002753 3.9e-07 58.9 139 43.9
AL1G13610 Arabidopsis lyrata HOM05D002618 ORTHO05D002753 5.0e-07 58.5 153 37.9
CiPaw.03G268100 Carya illinoinensis HOM05D002618 ORTHO05D002753 5.0e-07 58.5 113 37.2
Glyma.10G039100 Glycine max HOM05D002618 ORTHO05D002753 5.0e-07 58.5 122 35.2
MD16G1222600 Malus domestica HOM05D002618 ORTHO05D002753 5.0e-07 58.5 143 40.6
PGSC0003DMG400042837 Solanum tuberosum HOM05D002618 ORTHO05D002753 5.0e-07 58.5 135 37.0
Cpa.g.sc44.29 Carica papaya HOM05D002618 ORTHO05D002753 6.6e-07 58.2 85 47.1
Ciclev10022665m.g Citrus clementina HOM05D002618 ORTHO05D002753 6.6e-07 58.2 144 34.0
Aqoxy5G00180 Aquilegia oxysepala HOM05D002618 ORTHO05D002753 8.6e-07 57.8 89 43.8
BcaC07g42218 Brassica carinata HOM05D002618 ORTHO05D002753 8.6e-07 57.8 146 33.6
C08p52530 Brassica napus HOM05D002618 ORTHO05D002753 8.6e-07 57.8 146 33.6
BolC8t52780H Brassica oleracea HOM05D002618 ORTHO05D002753 8.6e-07 57.8 146 33.6
AUR62015540 Chenopodium quinoa HOM05D002618 ORTHO05D002753 8.6e-07 57.8 44 70.5
TWI75G0073 Tripterygium wilfordii HOM05D002618 ORTHO05D002753 8.6e-07 57.8 141 38.3
BraA09t42144Z Brassica rapa HOM05D002618 ORTHO05D002753 1.1e-06 57.4 146 33.6
Oeu035724.1 Olea europaea HOM05D002618 ORTHO05D002753 1.1e-06 57.4 119 37.0
Ah.04g155500 Amaranthus hybridus HOM05D002618 ORTHO05D002753 1.5e-06 57.0 120 39.2
BolC5t29010H Brassica oleracea HOM05D002618 ORTHO05D002753 1.5e-06 57.0 145 33.1
BraA10t42519Z Brassica rapa HOM05D002618 ORTHO05D002753 1.5e-06 57.0 145 33.1
Glyma.03G165300 Glycine max HOM05D002618 ORTHO05D002753 1.5e-06 57.0 95 41.1
VMungo0720G0981 Vigna mungo HOM05D002618 ORTHO05D002753 1.5e-06 57.0 124 35.5
BcaC05g24476 Brassica carinata HOM05D002618 ORTHO05D002753 1.9e-06 56.6 145 32.4
C05p02320 Brassica napus HOM05D002618 ORTHO05D002753 1.9e-06 56.6 145 33.1
Duzib133G0289 Durio zibethinus HOM05D002618 ORTHO05D002753 1.9e-06 56.6 134 35.1
Duzib138G0485 Durio zibethinus HOM05D002618 ORTHO05D002753 1.9e-06 56.6 147 34.0
Lsat_1_v5_gn_1_75101 Lactuca sativa HOM05D002618 ORTHO05D002753 1.9e-06 56.6 91 50.5
A10p02510 Brassica napus HOM05D002618 ORTHO05D002753 2.5e-06 56.2 145 31.7
Sp2g08880 Schrenkiella parvula HOM05D002618 ORTHO05D002753 2.5e-06 56.2 65 49.2
TPR.G21897 Trifolium pratense HOM05D002618 ORTHO05D002753 2.5e-06 56.2 88 39.8
EL10Ac3g04974 Beta vulgaris HOM05D002618 ORTHO05D002753 3.3e-06 55.8 112 46.4
A09p20780 Brassica napus HOM05D002618 ORTHO05D002753 3.3e-06 55.8 85 44.7
BraA09t37682Z Brassica rapa HOM05D002618 ORTHO05D002753 3.3e-06 55.8 85 44.7
CDE02G1221 Ceratophyllum demersum HOM05D002618 ORTHO05D002753 3.3e-06 55.8 100 42.0
Gohir.A08G191600 Gossypium hirsutum HOM05D002618 ORTHO05D002753 3.3e-06 55.8 141 33.3
Gorai.004G221900 Gossypium raimondii HOM05D002618 ORTHO05D002753 3.3e-06 55.8 141 33.3
Sc25g0003630 Simmondsia chinensis HOM05D002618 ORTHO05D002753 3.3e-06 55.8 121 38.0
THA.LOC104826047 Tarenaya hassleriana HOM05D002618 ORTHO05D002753 3.3e-06 55.8 149 30.9
Aa31LG5G3220 Aethionema arabicum HOM05D002618 ORTHO05D002753 4.3e-06 55.5 67 47.8
Ca_09659_v3 Cicer arietinum L. HOM05D002618 ORTHO05D002753 4.3e-06 55.5 96 36.5
Ca_09845_v3 Cicer arietinum L. HOM05D002618 ORTHO05D002753 4.3e-06 55.5 144 34.0
BcaC04g21872 Brassica carinata HOM05D002618 ORTHO05D002753 5.6e-06 55.1 116 38.8
C09p26310 Brassica napus HOM05D002618 ORTHO05D002753 5.6e-06 55.1 116 38.8
BolC9t55534H Brassica oleracea HOM05D002618 ORTHO05D002753 5.6e-06 55.1 116 38.8
AT1G04000 Arabidopsis thaliana HOM05D002618 ORTHO05D002753 7.3e-06 54.7 130 37.7
Oeu035718.1 Olea europaea HOM05D002618 ORTHO05D002753 7.3e-06 54.7 147 34.0
A09p68090 Brassica napus HOM05D002618 ORTHO05D002753 9.5e-06 54.3 146 32.9
Gohir.D08G209500 Gossypium hirsutum HOM05D002618 ORTHO05D002753 9.5e-06 54.3 141 32.6
Lalb_Chr02g0152661 Lupinus albus HOM05D002618 ORTHO05D002753 9.5e-06 54.3 113 37.2
Sed0025704 Sechium edule HOM05D002618 ORTHO05D002753 9.5e-06 54.3 146 36.3


User provided reference genes

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