Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 4.1e-295 1017.3 512 100.0
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 9.6e-236 820.1 494 84.4
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 2.8e-235 818.5 493 84.0
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 3.7e-235 818.1 493 84.0
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.4e-233 811.6 494 83.0
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 5.8e-233 810.8 494 83.8
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 6.5e-232 807.4 494 82.6
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.4e-231 806.2 510 80.6
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.5e-228 796.2 493 81.9
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 1.5e-228 796.2 507 79.7
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.9e-228 795.8 477 83.6
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 9.6e-228 793.5 538 76.0
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 3.7e-227 791.6 493 80.5
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 6.3e-227 790.8 513 78.6
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 2.4e-226 788.9 494 81.0
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.1e-226 788.5 505 79.4
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 2.0e-225 785.8 497 79.7
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 3.4e-225 785.0 522 77.2
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.0e-224 783.5 473 82.5
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.0e-224 783.5 497 80.1
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.7e-224 782.7 506 77.7
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.7e-224 782.7 519 76.7
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.4e-223 779.6 483 80.7
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 9.3e-223 776.9 493 79.1
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 1.2e-222 776.5 499 78.4
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.1e-222 775.8 503 78.9
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.3e-221 773.1 513 75.8
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.3e-221 773.1 509 77.6
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 2.3e-221 772.3 498 77.3
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 8.7e-221 770.4 504 76.8
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 1.9e-220 769.2 493 79.1
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.1e-218 763.5 494 78.3
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.8e-218 762.7 517 75.6
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 3.1e-218 761.9 495 77.4
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.1e-218 761.9 494 77.7
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 6.9e-218 760.8 498 76.3
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 6.9e-218 760.8 494 77.5
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.5e-217 759.6 494 77.7
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 2.0e-217 759.2 493 77.9
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 3.4e-217 758.4 512 74.0
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 4.5e-217 758.1 494 77.5
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 7.7e-217 757.3 498 76.1
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 7.7e-217 757.3 485 78.8
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.0e-216 756.9 493 78.1
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.7e-216 756.1 495 77.2
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 2.2e-216 755.7 462 81.8
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 2.2e-216 755.7 476 78.6
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 2.9e-216 755.4 540 72.6
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 6.5e-216 754.2 497 76.5
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 5.5e-215 751.1 486 77.0
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 9.4e-215 750.4 494 76.7
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.6e-214 749.6 518 73.7
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.6e-214 749.6 493 76.7
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 2.7e-214 748.8 485 77.7
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 4.6e-214 748.0 494 76.5
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 7.9e-214 747.3 509 75.2
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.4e-213 746.5 495 76.0
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 2.3e-213 745.7 479 78.7
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 2.3e-213 745.7 494 75.7
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 3.9e-213 745.0 511 74.2
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 3.9e-213 745.0 495 75.2
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 5.1e-213 744.6 494 76.3
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 8.8e-213 743.8 493 77.1
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 2.5e-212 742.3 496 74.2
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 2.2e-211 739.2 504 73.8
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 3.7e-211 738.4 470 77.9
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 6.9e-210 734.2 520 72.9
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 5.0e-208 728.0 543 69.8
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 1.1e-207 726.9 608 64.5
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.0e-205 720.3 481 74.0
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 5.1e-205 718.0 493 73.8
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 5.7e-204 714.5 495 72.5
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 7.4e-204 714.1 523 71.3
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 2.8e-203 712.2 501 71.7
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 3.7e-203 711.8 470 77.4
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.4e-202 709.9 442 80.1
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 1.8e-202 709.5 484 72.9
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 5.3e-202 708.0 467 74.9
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 9.1e-202 707.2 490 72.0
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 4.5e-201 704.9 498 71.3
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 9.4e-199 697.2 478 75.1
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.3e-196 688.7 429 80.7
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 4.5e-193 678.3 463 76.5
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.3e-192 676.8 550 65.8
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 5.5e-191 671.4 447 75.8
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 3.6e-190 668.7 494 71.1
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 3.4e-188 662.1 542 64.9
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 7.5e-188 661.0 461 72.5
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 4.8e-187 658.3 449 73.1
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 3.1e-186 655.6 422 77.5
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.5e-183 646.0 530 65.1
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 1.3e-179 633.6 422 74.6
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.8e-178 629.8 466 66.1
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 4.7e-174 615.1 496 62.5
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 7.5e-172 607.8 422 71.6
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 3.7e-171 605.5 478 66.5
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 1.3e-168 597.0 483 60.0
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 9.5e-167 590.9 516 63.0
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 4.0e-165 585.5 450 68.4
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 8.9e-165 584.3 491 61.1
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.1e-162 577.4 493 59.8
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.8e-158 562.8 315 89.5
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 6.2e-158 561.6 433 67.2
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 3.2e-154 549.3 404 68.1
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 4.7e-150 535.4 346 81.2
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 4.4e-148 528.9 426 66.9
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.2e-142 510.8 301 84.4
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 1.5e-140 503.8 468 56.0
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.1e-138 497.7 478 53.8
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 5.1e-136 488.8 301 80.7
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 2.6e-132 476.5 269 89.2
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 9.6e-119 431.4 251 86.9
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.7e-110 402.9 458 43.7
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.3e-102 377.9 223 84.3
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.3e-102 377.9 238 78.2
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 2.9e-91 340.1 205 83.9
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.1e-90 338.2 428 47.9
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.2e-90 336.3 326 59.8
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 8.0e-81 305.4 183 83.1
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 1.9e-74 284.3 153 86.9
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 5.4e-69 266.2 176 70.5
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 1.7e-67 261.2 174 69.5
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 6.5e-67 259.2 153 79.7
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.5e-63 248.1 477 34.8
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.4e-53 214.2 120 80.0
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 3.9e-43 180.3 427 31.6
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-39 168.7 134 64.9
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 9.9e-39 165.6 221 44.8
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 3.5e-36 157.1 184 47.3
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.0e-35 155.6 139 61.9
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.1e-34 152.1 89 77.5
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.1e-34 152.1 89 77.5
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.8e-33 147.5 325 34.2
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 8.9e-32 142.5 123 61.8
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 1.9e-26 124.8 148 51.4
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.1e-24 119.0 67 82.1
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 6.9e-24 116.3 66 81.8
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 2.2e-22 111.3 138 48.6
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.8e-22 110.5 64 84.4
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 3.8e-22 110.5 93 66.7
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 1.4e-21 108.6 87 64.4
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 2.3e-19 101.3 52 90.4
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 6.6e-19 99.8 67 67.2
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 7.3e-18 96.3 103 56.3
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 2.4e-13 81.3 45 88.9
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 2.7e-12 77.8 58 70.7
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 2.7e-12 77.8 47 83.0
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 7.9e-12 76.3 61 63.9
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 2.3e-11 74.7 105 39.0
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.5e-10 72.0 57 70.2
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 4.3e-10 70.5 46 76.1
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 3.7e-09 67.4 72 51.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 1.8e-08 65.1 51 62.7
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 3.1e-08 64.3 36 83.3
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 2.0e-07 61.6 43 67.4
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 7.6e-07 59.7 38 71.1
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 1.3e-06 58.9 38 71.1
Pp3c18_10660 Physcomitrium patens HOM05D004684 ORTHO05D313234 3.8e-06 57.4 60 48.3


User provided reference genes

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