Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 1.5e-38 162.5 92 100.0
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 2.0e-35 152.1 99 90.9
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 5.9e-27 124.0 92 71.7
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 5.9e-27 124.0 92 73.9
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 5.0e-26 120.9 92 72.8
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 8.5e-26 120.2 92 72.8
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.1e-24 115.5 92 70.7
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 2.3e-23 112.1 92 68.5
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 4.0e-23 111.3 91 64.8
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 8.5e-18 93.6 94 58.5
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.8e-16 88.6 94 53.2
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 4.7e-16 87.8 97 56.7
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 3.0e-15 85.1 98 58.2
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 3.0e-15 85.1 98 58.2
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 3.0e-15 85.1 96 53.1
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 3.4e-14 81.6 97 51.5
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 4.4e-14 81.3 94 56.4
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 5.7e-14 80.9 98 55.1
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 1.7e-13 79.3 91 53.8
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 2.2e-13 79.0 92 48.9
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 2.8e-13 78.6 118 46.6
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 4.9e-13 77.8 92 53.3
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 8.3e-13 77.0 94 51.1
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 8.3e-13 77.0 94 51.1
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 8.3e-13 77.0 94 51.1
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 8.3e-13 77.0 94 51.1
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 8.3e-13 77.0 94 51.1
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 8.3e-13 77.0 94 51.1
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 8.3e-13 77.0 94 51.1
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 8.3e-13 77.0 94 51.1
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 1.1e-12 76.6 118 45.8
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 1.8e-12 75.9 98 51.0
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 4.1e-12 74.7 92 54.3
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 4.1e-12 74.7 89 52.8
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 5.4e-12 74.3 95 51.6
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 5.4e-12 74.3 72 52.8
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 7.0e-12 73.9 95 51.6
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 7.0e-12 73.9 95 51.6
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 9.2e-12 73.6 92 53.3
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 2.0e-11 72.4 94 51.1
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 2.0e-11 72.4 96 49.0
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 2.7e-11 72.0 65 61.5
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 3.5e-11 71.6 118 44.1
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 3.5e-11 71.6 118 44.1
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 3.5e-11 71.6 118 44.1
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 3.5e-11 71.6 92 50.0
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 5.9e-11 70.9 74 54.1
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 5.9e-11 70.9 96 47.9
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 1.0e-10 70.1 99 47.5
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.0e-10 70.1 96 47.9
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 1.3e-10 69.7 119 44.5
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 1.3e-10 69.7 93 50.5
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 1.3e-10 69.7 119 44.5
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 2.3e-10 68.9 98 53.1
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 2.9e-10 68.6 90 54.4
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 5.0e-10 67.8 92 47.8
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 5.0e-10 67.8 98 52.0
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 1.1e-09 66.6 70 52.9
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-09 66.6 70 52.9
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 1.1e-09 66.6 92 46.7
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 1.5e-09 66.2 46 78.3
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 1.5e-09 66.2 96 49.0
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.5e-09 66.2 97 50.5
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 2.5e-09 65.5 88 51.1
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 7.3e-09 63.9 87 44.8
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 1.2e-08 63.2 60 56.7
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 1.6e-08 62.8 129 38.0
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 1.6e-08 62.8 92 42.4
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 1.6e-08 62.8 92 42.4
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 1.6e-08 62.8 39 74.4
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 2.1e-08 62.4 118 41.5
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 2.1e-08 62.4 92 42.4
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 2.8e-08 62.0 44 75.0
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 3.6e-08 61.6 92 45.7
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 4.7e-08 61.2 44 75.0
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 4.7e-08 61.2 86 43.0
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 6.1e-08 60.8 118 40.7
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 6.1e-08 60.8 69 50.7
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 8.0e-08 60.5 92 44.6
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 8.0e-08 60.5 116 39.7
A08p06740 Brassica napus HOM05D005842 ORTHO05D007077 1.0e-07 60.1 45 75.6
C08p07940 Brassica napus HOM05D005842 ORTHO05D007077 1.0e-07 60.1 45 75.6
BolC8t47646H Brassica oleracea HOM05D005842 ORTHO05D007077 1.0e-07 60.1 45 75.6
BraA08t32692Z Brassica rapa HOM05D005842 ORTHO05D007077 1.0e-07 60.1 45 75.6
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.0e-07 60.1 88 42.0
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 1.4e-07 59.7 86 43.0
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 1.4e-07 59.7 96 45.8
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 1.8e-07 59.3 94 42.6
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 2.3e-07 58.9 118 40.7
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 2.3e-07 58.9 61 57.4
Medtr1g045950 Medicago truncatula HOM05D005842 ORTHO05D007077 3.0e-07 58.5 37 73.0
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 5.2e-07 57.8 90 48.9
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 6.8e-07 57.4 89 42.7
AT4G13560 Arabidopsis thaliana HOM05D005842 ORTHO05D007077 1.2e-06 56.6 118 39.0
Carub.0007s2898 Capsella rubella HOM05D005842 ORTHO05D007077 1.2e-06 56.6 41 73.2
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 1.2e-06 56.6 61 52.5
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-06 56.6 89 41.6
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 1.5e-06 56.2 90 45.6
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 1.5e-06 56.2 140 32.9
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 2.0e-06 55.8 89 41.6
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 2.0e-06 55.8 89 41.6
Duzib151G0923 Durio zibethinus HOM05D005842 ORTHO05D007077 4.4e-06 54.7 36 77.8
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 4.4e-06 54.7 89 40.4
CANSAT78G1061 Cannabis sativa HOM05D005842 ORTHO05D007077 5.7e-06 54.3 42 59.5
Sed0006099 Sechium edule HOM05D005842 ORTHO05D007077 5.7e-06 54.3 90 40.0
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 5.7e-06 54.3 64 51.6
Psat6g108960 Pisum sativum HOM05D005842 ORTHO05D007077 7.5e-06 53.9 38 65.8
Cpa.g.sc336.6 Carica papaya HOM05D008630 ORTHO05D010727 9.8e-06 53.5 64 48.4
FAN25G2315 Fragaria x ananassa HOM05D010780 ORTHO05D010461 9.8e-06 53.5 33 75.8
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 9.8e-06 53.5 92 43.5
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 9.8e-06 53.5 92 43.5
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 9.8e-06 53.5 33 75.8


User provided reference genes

Program Settings