Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 3.0e-140 501.9 261 100.0
Dinv44367 Davidia involucrata HOM05D010970 ORTHO05D012912 1.8e-52 210.3 237 55.7
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 3.2e-46 189.5 117 81.2
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 3.2e-46 189.5 117 80.3
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 1.6e-45 187.2 115 82.6
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 3.6e-45 186.0 113 81.4
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 6.1e-45 185.3 114 80.7
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 1.8e-44 183.7 117 78.6
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 4.0e-44 182.6 117 79.5
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 4.0e-44 182.6 119 77.3
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 4.0e-44 182.6 119 77.3
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 4.0e-44 182.6 119 77.3
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 4.0e-44 182.6 114 78.9
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 4.0e-44 182.6 114 80.7
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 8.8e-44 181.4 113 83.2
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 8.8e-44 181.4 117 76.9
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 2.0e-43 180.3 116 76.7
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 2.6e-43 179.9 117 78.6
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 3.4e-43 179.5 117 79.5
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 3.4e-43 179.5 111 82.9
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 3.4e-43 179.5 113 82.3
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 5.7e-43 178.7 114 78.9
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 7.5e-43 178.3 108 83.3
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 7.5e-43 178.3 117 79.5
Hma1.2p1_1185F.1_g264990 Hydrangea macrophylla HOM05D010970 ORTHO05D012912 9.8e-43 177.9 124 62.9
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 2.8e-42 176.4 111 81.1
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 4.9e-42 175.6 116 75.9
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 6.3e-42 175.3 117 73.5
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 6.3e-42 175.3 117 72.6
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 1.1e-41 174.5 117 76.1
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 2.4e-41 173.3 117 70.9
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 3.1e-41 172.9 109 81.7
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 3.1e-41 172.9 112 76.8
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 4.1e-41 172.6 117 73.5
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 5.4e-41 172.2 120 75.0
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 5.4e-41 172.2 117 72.6
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 9.2e-41 171.4 109 80.7
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 2.0e-40 170.2 108 80.6
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 2.7e-40 169.9 119 76.5
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 3.5e-40 169.5 111 77.5
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 3.5e-40 169.5 120 75.0
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 4.5e-40 169.1 112 79.5
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 4.5e-40 169.1 112 79.5
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.5e-40 169.1 109 78.0
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.5e-40 169.1 109 78.0
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.5e-40 169.1 109 78.0
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 7.7e-40 168.3 111 78.4
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 7.7e-40 168.3 111 78.4
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 7.7e-40 168.3 111 78.4
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 7.7e-40 168.3 111 78.4
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 7.7e-40 168.3 117 70.9
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 1.0e-39 167.9 109 77.1
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 1.0e-39 167.9 117 70.9
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 1.7e-39 167.2 113 73.5
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 2.3e-39 166.8 113 75.2
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.9e-39 166.4 108 77.8
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 2.9e-39 166.4 113 76.1
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 3.8e-39 166.0 113 76.1
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 3.8e-39 166.0 113 76.1
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 3.8e-39 166.0 112 72.3
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 5.0e-39 165.6 111 76.6
TAR370G0005 Trochodendron aralioides HOM05D010970 ORTHO05D012912 8.6e-39 164.9 125 58.4
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.5e-38 164.1 118 72.9
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 1.5e-38 164.1 116 76.7
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 1.9e-38 163.7 116 70.7
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 2.5e-38 163.3 108 75.9
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 2.5e-38 163.3 117 69.2
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 4.3e-38 162.5 118 72.0
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 5.6e-38 162.2 118 72.0
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 7.3e-38 161.8 117 71.8
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 1.2e-37 161.0 112 69.6
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 1.2e-37 161.0 112 69.6
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 3.6e-37 159.5 98 81.6
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 3.6e-37 159.5 115 71.3
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 4.7e-37 159.1 117 68.4
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 8.0e-37 158.3 112 69.6
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.4e-36 157.5 113 69.9
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 4.0e-36 156.0 91 87.9
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 4.0e-36 156.0 104 76.9
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 5.2e-36 155.6 99 80.8
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 1.2e-35 154.5 117 65.8
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 2.6e-35 153.3 96 79.2
Rhsim04G0223800 Rhododendron simsii HOM05D010970 ORTHO05D012912 2.6e-35 153.3 124 56.5
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 3.4e-35 152.9 99 78.8
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 3.4e-35 152.9 115 68.7
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 5.7e-35 152.1 99 78.8
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 5.7e-35 152.1 109 72.5
Potri.008G220900 Populus trichocarpa HOM05D010970 ORTHO05D012912 7.5e-35 151.8 107 64.5
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 1.3e-34 151.0 118 67.8
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 1.3e-34 151.0 91 82.4
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 2.2e-34 150.2 115 69.6
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.2e-34 150.2 115 68.7
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.2e-34 150.2 115 68.7
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 3.7e-34 149.4 92 79.3
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 1.1e-33 147.9 97 78.4
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 3.2e-33 146.4 114 65.8
Duzib212G0122 Durio zibethinus HOM05D010970 ORTHO05D012912 1.2e-32 144.4 118 66.1
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 1.6e-32 144.1 117 65.0
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 2.7e-32 143.3 117 65.0
Sabra08G0152300 Salix brachista HOM05D010970 ORTHO05D012912 2.7e-32 143.3 127 62.2
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 4.6e-32 142.5 92 79.3
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.0e-31 141.4 115 65.2
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 3.9e-31 139.4 114 64.9
Thecc.04G286400 Theobroma cacao HOM05D010970 ORTHO05D012912 1.5e-30 137.5 151 59.6
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 4.3e-30 136.0 115 59.1
Atru.chr4.2871 Acer truncatum HOM05D010970 ORTHO05D012912 9.5e-30 134.8 109 60.6
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 4.7e-29 132.5 96 74.0
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 4.7e-29 132.5 96 74.0
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 1.0e-28 131.3 96 72.9
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 2.3e-28 130.2 96 71.9
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 2.3e-28 130.2 116 62.1
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 2.0e-27 127.1 105 59.0
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 2.6e-27 126.7 121 62.8
HanXRQChr17g0538751 Helianthus annuus HOM05D010970 ORTHO05D012912 3.4e-27 126.3 101 54.5
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 3.7e-26 122.9 108 61.1
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 5.4e-25 119.0 113 56.6
Lsat_1_v5_gn_3_24741 Lactuca sativa HOM05D010970 ORTHO05D012912 7.0e-25 118.6 124 58.9
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.2e-24 117.9 82 73.2
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 1.6e-24 117.5 121 54.5
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 6.0e-24 115.5 92 66.3
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 6.0e-24 115.5 115 57.4
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 3.9e-23 112.8 109 56.9
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 3.9e-23 112.8 108 57.4
Eucgr.H03933 Eucalyptus grandis HOM05D010970 ORTHO05D012912 5.6e-22 109.0 77 58.4
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 5.6e-22 109.0 117 49.6
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 7.3e-22 108.6 97 62.9
Actinidia40281 Actinidia chinensis HOM05D010970 ORTHO05D012912 9.5e-22 108.2 79 73.4
CiPaw.02G082100 Carya illinoinensis HOM05D010970 ORTHO05D012912 9.5e-22 108.2 102 51.0
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 1.8e-20 104.0 124 51.6
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 9.8e-19 98.2 121 50.4
SMO304G0090 Selaginella moellendorffii HOM05D010970 ORTHO05D012912 1.9e-14 84.0 81 45.7
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 9.5e-14 81.6 110 45.5
Manes.15G011550 Manihot esculenta HOM05D010970 ORTHO05D012912 1.4e-12 77.8 70 51.4
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 4.0e-12 76.3 114 40.4
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 1.4e-09 67.8 49 69.4
SMO356G0499 Selaginella moellendorffii HOM05D010970 ORTHO05D012912 5.4e-09 65.9 51 51.0
Mapoly0140s0018 Marchantia polymorpha HOM05D010970 ORTHO05D012912 3.9e-07 59.7 63 38.1
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 1.1e-06 58.2 64 39.1
Migut.N00578 Erythranthe guttata HOM05D003064 ORTHO05D001733 3.3e-06 56.6 102 32.4


User provided reference genes

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