Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 7.5e-124 447.2 227 100.0
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.6e-110 402.9 224 89.3
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 3.6e-110 401.7 224 89.3
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 8.1e-110 400.6 227 86.8
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.2e-108 396.7 220 90.0
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 5.8e-108 394.4 224 88.8
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 5.8e-108 394.4 223 88.3
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 7.6e-108 394.0 225 88.0
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 9.9e-108 393.7 225 88.0
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 1.7e-107 392.9 225 87.6
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 2.9e-107 392.1 222 87.8
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 4.9e-107 391.3 227 85.0
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 8.3e-107 390.6 222 86.5
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.1e-106 390.2 225 86.2
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.4e-106 389.8 227 86.8
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.9e-106 389.4 227 85.5
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.9e-106 389.4 213 90.1
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 2.4e-106 389.0 213 89.7
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.4e-106 389.0 222 86.0
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.4e-106 389.0 222 86.0
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 4.1e-106 388.3 224 85.3
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 7.1e-106 387.5 225 84.0
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 9.2e-106 387.1 225 86.2
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.2e-105 386.7 224 85.7
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 3.5e-105 385.2 225 85.3
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.6e-105 384.8 228 84.2
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 6.0e-105 384.4 228 84.2
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 6.0e-105 384.4 222 86.5
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 7.8e-105 384.0 224 83.0
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.0e-104 383.6 262 76.7
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.3e-104 383.3 221 86.0
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.3e-104 383.3 230 83.0
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.7e-104 382.9 217 84.8
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 3.0e-104 382.1 216 86.6
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 3.0e-104 382.1 222 83.3
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 3.9e-104 381.7 222 86.0
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 3.9e-104 381.7 230 82.6
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 5.1e-104 381.3 222 86.5
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.1e-103 380.2 213 87.8
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 3.3e-103 378.6 217 84.3
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 3.3e-103 378.6 217 83.4
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 4.3e-103 378.3 216 84.7
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 1.6e-102 376.3 218 85.8
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.8e-102 375.6 214 84.6
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 3.6e-102 375.2 224 84.8
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 4.7e-102 374.8 227 84.1
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 8.1e-102 374.0 212 86.8
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 8.1e-102 374.0 224 84.4
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 8.1e-102 374.0 222 84.7
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.4e-101 372.5 224 83.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 2.4e-101 372.5 268 71.6
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 5.2e-101 371.3 221 84.6
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 4.4e-100 368.2 231 79.7
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 9.9e-100 367.1 222 79.7
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 9.9e-100 367.1 217 81.1
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.7e-99 366.3 220 80.0
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 2.9e-99 365.5 225 78.2
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 2.9e-99 365.5 225 78.2
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.9e-99 365.5 222 79.3
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.9e-99 364.8 219 82.2
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 6.4e-99 364.4 222 78.8
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 1.1e-98 363.6 222 79.3
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.4e-98 363.2 222 78.4
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 2.4e-98 362.5 216 80.1
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 2.4e-98 362.5 222 82.0
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 4.2e-98 361.7 222 78.8
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 7.1e-98 360.9 222 78.4
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.2e-97 360.1 219 81.3
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.6e-97 359.8 222 79.3
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 3.5e-97 358.6 227 78.9
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 7.8e-97 357.5 215 80.5
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.7e-96 356.3 221 79.2
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.3e-96 355.9 221 77.8
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.1e-95 353.6 221 78.7
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.1e-94 349.4 225 77.8
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 3.6e-94 348.6 215 78.1
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 6.2e-94 347.8 219 78.5
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 8.1e-94 347.4 222 77.5
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 1.1e-93 347.1 224 77.2
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.4e-93 346.7 224 76.3
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 2.4e-93 345.9 224 77.2
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 6.9e-93 344.4 220 76.8
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.0e-92 342.8 270 65.2
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 5.8e-92 341.3 211 78.7
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 7.6e-92 340.9 213 79.8
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 9.9e-92 340.5 220 74.5
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.7e-91 339.7 224 73.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 4.9e-91 338.2 189 88.9
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 6.4e-91 337.8 222 73.9
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 6.4e-91 337.8 223 78.0
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 8.4e-91 337.4 221 76.5
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 1.1e-90 337.0 220 73.6
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.9e-90 336.3 222 73.9
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 9.3e-90 334.0 225 73.3
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 9.3e-90 334.0 225 73.3
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 4.6e-89 331.6 229 72.5
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 6.0e-89 331.3 220 72.3
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 6.0e-89 331.3 220 72.3
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.3e-88 330.1 220 71.8
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.7e-88 329.7 224 75.0
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 2.3e-88 329.3 220 71.8
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 3.9e-88 328.6 226 76.1
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 6.6e-88 327.8 210 73.8
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 6.6e-88 327.8 220 71.4
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 8.7e-88 327.4 227 72.2
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.4e-82 309.3 223 67.7
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.2e-82 308.9 217 69.6
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 5.4e-82 308.1 214 69.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 9.3e-82 307.4 217 69.1
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.3e-80 303.5 213 70.4
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 7.4e-79 297.7 219 68.0
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 8.1e-78 294.3 177 80.2
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.1e-77 293.9 211 69.7
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 7.6e-76 287.7 218 64.2
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 8.7e-72 274.2 180 71.7
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.6e-68 262.7 223 61.0
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.4e-66 256.9 141 88.7
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 4.2e-58 228.8 128 86.7
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 1.6e-57 226.9 130 86.2
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 7.9e-57 224.6 125 87.2
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 1.4e-56 223.8 134 83.6
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.9e-56 222.2 233 50.6
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 9.7e-55 217.6 122 86.1
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 5.5e-50 201.8 159 68.6
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.2e-42 175.6 124 67.7
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.2e-42 174.9 117 72.6
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 6.1e-41 171.8 107 77.6
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 6.1e-41 171.8 91 94.5
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.7e-40 168.3 95 88.4
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.6e-39 166.4 130 67.7
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 8.0e-33 144.8 95 73.7
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 8.8e-32 141.4 202 41.1
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.0e-31 140.2 164 44.5
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.4e-31 139.0 91 69.2
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 4.8e-30 135.6 78 79.5
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.6e-28 130.6 94 70.2
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.5e-28 129.0 189 38.6
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 5.9e-28 128.6 202 41.1
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.0e-27 127.9 189 38.6
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.9e-26 123.6 219 35.6
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 2.5e-26 123.2 181 39.8
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 6.1e-25 118.6 73 79.5
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 3.0e-24 116.3 88 67.0
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 1.2e-23 114.4 195 38.5
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 9.8e-23 111.3 75 72.0
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.7e-22 110.5 65 83.1
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 2.8e-22 109.8 67 73.1
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 8.3e-22 108.2 216 35.2
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.8e-21 107.1 98 59.2
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.1e-21 106.3 209 33.5
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 5.9e-20 102.1 63 79.4
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 7.7e-20 101.7 63 74.6
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.3e-19 100.1 170 33.5
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 3.3e-18 96.3 58 79.3
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.8e-17 93.2 53 81.1
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 3.6e-17 92.8 59 78.0
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 3.6e-17 92.8 70 65.7
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 3.0e-16 89.7 50 82.0
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 5.7e-15 85.5 68 61.8
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 2.7e-12 76.6 91 50.5
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 3.5e-12 76.3 57 68.4
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 2.3e-11 73.6 68 54.4
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 3.9e-11 72.8 65 55.4
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 5.0e-11 72.4 64 56.2
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 5.0e-11 72.4 66 57.6
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.5e-10 70.9 59 59.3
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 4.3e-10 69.3 57 59.6
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 1.0e-08 64.7 39 79.5
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 1.2e-07 61.2 48 62.5


User provided reference genes

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