Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1411.0 701 100.0
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1305.8 697 93.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1268.1 697 89.4
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1249.2 698 88.5
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1244.2 697 87.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1244.2 698 88.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1229.2 691 88.0
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1228.0 693 87.9
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1223.8 725 84.0
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1223.0 685 87.6
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1216.4 697 86.1
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1214.5 689 87.7
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1211.1 689 86.5
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1200.3 704 84.4
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1198.7 697 84.9
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1192.6 693 84.8
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1190.6 697 84.5
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1186.0 690 84.9
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1184.5 689 85.2
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1184.1 690 84.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1182.9 690 83.9
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1179.1 690 84.1
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1178.3 689 84.2
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1177.5 697 83.6
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1176.8 689 84.8
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1176.0 697 83.6
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1175.6 697 83.8
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1175.2 694 83.0
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1174.8 718 81.9
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1174.5 690 83.9
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1172.9 696 82.9
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1171.8 689 82.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1171.8 689 83.2
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1171.4 696 81.6
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1170.2 690 83.0
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1169.5 689 83.6
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1168.7 689 82.6
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1167.9 689 83.2
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1167.9 692 83.4
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1167.5 693 83.3
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1166.0 689 82.3
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1164.8 690 82.6
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1159.4 688 83.6
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1159.1 689 82.0
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1158.7 705 81.4
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1158.3 690 82.5
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1156.0 689 83.0
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1156.0 691 81.3
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1155.6 690 82.2
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1155.2 691 81.5
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1154.4 693 81.0
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1153.7 715 79.9
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1153.3 691 82.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1151.7 691 81.0
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1150.6 692 82.1
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1149.8 716 80.2
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1149.4 688 80.2
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1149.4 688 80.2
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1149.4 689 80.6
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1149.0 696 81.2
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1149.0 691 80.6
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1148.3 691 81.2
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1144.8 693 81.7
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1144.4 690 81.3
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1144.0 691 80.9
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1143.6 700 81.3
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1141.7 689 81.6
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1141.7 690 81.9
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1140.9 689 81.9
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1137.5 756 75.9
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1136.7 689 81.6
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1134.8 700 80.7
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1133.2 689 81.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1132.9 690 81.2
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1131.3 689 81.3
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1131.3 689 81.3
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1130.9 689 80.7
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1129.0 689 80.6
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1128.6 689 80.4
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1128.6 689 80.6
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1126.7 704 78.7
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1125.9 689 80.4
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1125.2 689 80.8
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1122.1 689 80.3
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1122.1 689 80.3
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1120.9 689 79.8
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1120.9 691 81.0
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1120.9 689 79.8
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1118.2 689 80.1
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1118.2 689 80.1
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1117.8 689 80.1
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1117.8 688 81.4
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1115.1 689 79.8
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1113.2 690 80.1
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1112.8 695 79.1
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1112.1 689 79.7
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1111.7 771 73.0
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1111.3 691 78.6
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1111.3 674 80.9
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1108.6 690 78.3
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1106.7 771 72.9
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1106.3 689 79.4
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1102.0 688 78.9
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1098.6 690 77.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1094.7 717 76.2
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1092.0 688 77.9
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1080.9 607 88.1
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1080.5 688 77.9
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 5.8e-311 1070.5 688 76.6
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 2.4e-301 1038.5 708 72.9
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 9.0e-301 1036.6 689 76.1
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.2e-300 1036.2 615 84.1
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 3.9e-296 1021.1 697 75.2
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 1.8e-277 959.1 689 72.3
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 5.5e-274 947.6 619 77.4
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 4.1e-269 931.4 698 71.2
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 9.0e-269 930.2 698 70.1
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.5e-252 876.3 693 61.6
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 6.7e-248 860.9 697 61.1
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.2e-246 855.9 735 58.1
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 8.2e-246 854.0 509 81.9
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 3.0e-240 835.5 687 59.1
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 4.0e-240 835.1 695 59.1
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.5e-234 816.6 688 62.5
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 9.8e-207 724.2 567 63.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.1e-180 636.7 450 69.8
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 4.2e-173 612.5 358 85.5
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.5e-170 603.2 436 70.4
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 3.8e-158 562.8 311 85.5
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.7e-130 469.2 319 73.4
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.9e-125 454.1 665 43.6
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.5e-93 348.2 231 75.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.4e-75 288.5 223 66.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.2e-63 248.8 136 82.4
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.9e-53 214.9 138 70.3
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.3e-41 175.6 117 72.6
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.4e-35 154.8 192 46.9
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 3.2e-32 144.4 156 50.6
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 2.0e-29 135.2 73 83.6
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 3.4e-26 124.4 97 67.0
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 8.8e-14 83.2 47 83.0
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.5e-13 82.4 49 73.5
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.3e-12 79.3 76 43.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.0e-09 69.7 33 97.0
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 4.2e-08 64.3 39 76.9


User provided reference genes

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