Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 7.8e-115 417.2 212 100.0
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 5.4e-108 394.4 212 94.3
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 5.6e-105 384.4 212 91.0
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 8.1e-104 380.6 216 89.8
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 3.4e-102 375.2 211 89.1
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 1.7e-101 372.9 209 88.5
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 2.2e-101 372.5 209 88.5
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 2.2e-101 372.5 211 87.2
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 2.9e-101 372.1 209 88.5
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 4.9e-101 371.3 209 89.0
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 4.9e-101 371.3 209 88.0
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 4.9e-101 371.3 217 86.2
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 1.4e-100 369.8 207 89.9
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 1.9e-100 369.4 207 89.4
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 2.4e-100 369.0 211 86.7
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 3.2e-100 368.6 209 88.0
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 5.4e-100 367.9 211 86.7
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 1.6e-99 366.3 211 87.2
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 2.7e-99 365.5 211 85.3
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 4.6e-99 364.8 211 86.3
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 6.0e-99 364.4 211 85.8
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 1.3e-98 363.2 211 85.3
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 1.3e-98 363.2 209 85.6
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 2.3e-98 362.5 211 85.3
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 3.0e-98 362.1 208 86.1
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 3.9e-98 361.7 211 85.8
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 5.1e-98 361.3 204 87.3
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 6.6e-98 360.9 207 86.5
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 6.6e-98 360.9 211 85.8
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 8.6e-98 360.5 207 87.0
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 1.5e-97 359.8 207 85.5
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 1.9e-97 359.4 206 85.9
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 5.6e-97 357.8 208 86.1
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 5.6e-97 357.8 208 86.1
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 5.6e-97 357.8 204 87.7
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 7.3e-97 357.5 207 86.0
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 1.2e-96 356.7 204 87.7
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 1.2e-96 356.7 204 87.7
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 1.2e-96 356.7 204 87.7
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 1.6e-96 356.3 210 83.3
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 4.7e-96 354.8 207 85.5
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 6.2e-96 354.4 208 85.1
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 8.1e-96 354.0 207 85.5
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 1.1e-95 353.6 210 84.8
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 1.4e-95 353.2 207 85.5
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 1.4e-95 353.2 208 84.1
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.8e-95 352.8 204 86.3
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 5.2e-95 351.3 212 84.0
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 1.2e-94 350.1 214 84.6
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 2.6e-94 349.0 207 85.0
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 3.4e-94 348.6 210 82.4
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 7.6e-94 347.4 208 83.2
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 1.3e-93 346.7 210 81.4
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 1.7e-93 346.3 211 82.0
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 1.7e-93 346.3 204 85.3
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 2.9e-93 345.5 205 83.9
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 4.9e-93 344.7 208 84.6
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 1.9e-92 342.8 212 81.6
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 1.9e-92 342.8 213 80.8
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 3.2e-92 342.0 212 81.6
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 7.1e-92 340.9 212 80.2
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 7.1e-92 340.9 212 81.6
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 7.1e-92 340.9 207 81.2
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 4.6e-91 338.2 204 81.4
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.5e-89 333.2 210 78.1
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.9e-89 332.8 207 78.3
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 1.9e-89 332.8 207 79.2
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.9e-89 332.8 200 81.0
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 2.5e-89 332.4 207 78.7
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 3.3e-89 332.0 207 78.3
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 5.6e-89 331.3 207 79.2
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 1.3e-88 330.1 207 77.8
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 1.6e-88 329.7 207 79.2
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 1.6e-88 329.7 207 78.3
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 2.8e-88 328.9 207 77.8
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 3.6e-88 328.6 210 77.6
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 4.8e-88 328.2 207 77.8
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 6.2e-88 327.8 278 65.5
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 8.1e-88 327.4 212 80.2
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 2.4e-87 325.9 207 77.8
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 4.0e-87 325.1 207 78.3
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 9.0e-87 323.9 204 77.5
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 4.4e-86 321.6 207 76.8
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 4.4e-86 321.6 216 76.9
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 1.1e-84 317.0 193 82.4
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 1.4e-84 316.6 204 75.5
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 3.2e-84 315.5 192 81.2
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 4.2e-84 315.1 299 60.2
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 1.2e-83 313.5 193 81.9
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 2.7e-83 312.4 204 74.5
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 1.0e-82 310.5 189 82.5
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.1e-81 307.0 209 72.7
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 2.1e-80 302.8 214 74.8
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 2.1e-80 302.8 204 72.5
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 8.1e-80 300.8 211 75.4
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 3.1e-79 298.9 204 74.5
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 1.4e-76 290.0 207 67.6
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 2.7e-75 285.8 170 83.5
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 4.6e-75 285.0 224 67.9
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 2.3e-74 282.7 209 74.2
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 1.9e-73 279.6 159 86.8
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 9.6e-73 277.3 210 69.0
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 3.7e-72 275.4 212 72.6
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 4.0e-71 271.9 172 76.2
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 6.9e-71 271.2 204 73.0
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 6.5e-69 264.6 159 81.1
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 2.1e-64 249.6 204 62.7
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 4.8e-64 248.4 212 64.6
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 2.0e-62 243.0 210 58.1
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 2.5e-57 226.1 127 87.4
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 1.5e-54 216.9 176 67.0
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 1.1e-49 200.7 122 80.3
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 1.7e-48 196.8 159 56.6
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 1.2e-46 190.7 162 64.8
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 3.0e-42 176.0 168 58.9
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 5.9e-38 161.8 104 76.0
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 2.5e-28 129.8 128 54.7
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.5e-28 129.8 85 77.6
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 2.7e-27 126.3 130 56.9
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 8.8e-26 121.3 179 46.4
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 1.8e-23 113.6 144 48.6
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 5.9e-22 108.6 124 54.0
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.9e-20 103.6 66 72.7
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 1.2e-19 100.9 99 56.6
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 2.0e-17 93.6 62 69.4
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 4.4e-17 92.4 198 38.9
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 4.4e-17 92.4 105 60.0
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 4.1e-15 85.9 55 76.4
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 5.9e-14 82.0 48 83.3
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 1.7e-13 80.5 202 29.2
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 2.9e-13 79.7 209 29.7
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 1.7e-08 63.9 53 64.2
FAN13G2879 Fragaria x ananassa HOM05D005661 ORTHO05D046262 3.5e-06 56.2 68 55.9
Medtr4g129075 Medicago truncatula HOM05D005661 ORTHO05D266434 5.9e-06 55.5 32 75.0


User provided reference genes

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