Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29642 Davidia involucrata HOM05D000005 ORTHO05D180388 9.2e-50 200.3 96 100.0
CSS0022461 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.4e-12 75.1 72 52.8
Sc07g0002920 Simmondsia chinensis HOM05D000005 ORTHO05D000012 3.8e-11 72.0 70 51.4
RcHm_v2.0_Chr6g0281871 Rosa chinensis HOM05D000005 ORTHO05D000294 1.4e-10 70.1 71 52.1
FvH4_7g10520 Fragaria vesca HOM05D000005 ORTHO05D000012 3.2e-10 68.9 71 50.7
Prupe.6G083100 Prunus persica HOM05D000005 ORTHO05D000012 3.2e-10 68.9 72 48.6
Prupe.8G184900 Prunus persica HOM05D000005 ORTHO05D000012 3.2e-10 68.9 72 45.8
FvH4_7g09800 Fragaria vesca HOM05D000005 ORTHO05D000012 5.4e-10 68.2 71 50.7
FAN03G1781 Fragaria x ananassa HOM05D000005 ORTHO05D000294 5.4e-10 68.2 71 50.7
FAN06G0964 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.4e-10 68.2 71 50.7
FAN06G3785 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.4e-10 68.2 71 50.7
PGSC0003DMG402018257 Solanum tuberosum HOM05D000005 ORTHO05D000012 5.4e-10 68.2 72 50.0
Solyc01g102840.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 7.1e-10 67.8 72 50.0
Sopen01g045240 Solanum pennellii HOM05D000005 ORTHO05D000012 7.1e-10 67.8 72 50.0
Hma1.2p1_0812F.1_g222290 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 9.3e-10 67.4 71 49.3
Prupe.2G135700 Prunus persica HOM05D000005 ORTHO05D000012 9.3e-10 67.4 71 52.1
CAN.G1379.6 Capsicum annuum HOM05D000005 ORTHO05D000012 1.2e-09 67.0 72 50.0
FAN03G2198 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.2e-09 67.0 71 50.7
Prupe.8G185300 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-09 65.9 69 52.2
CSS0009639 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 3.5e-09 65.5 72 47.2
FAN10G2755 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.5e-09 65.5 71 45.1
PGSC0003DMG400013090 Solanum tuberosum HOM05D000005 ORTHO05D000012 3.5e-09 65.5 71 46.5
CAN.G1076.17 Capsicum annuum HOM05D000005 ORTHO05D000012 4.6e-09 65.1 70 48.6
FAN15G2828 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.6e-09 65.1 70 48.6
PGSC0003DMG400002799 Solanum tuberosum HOM05D000005 ORTHO05D000012 4.6e-09 65.1 70 48.6
FAN03G1873 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.0e-09 64.7 71 46.5
Nitab4.5_0001085g0150 Nicotiana tabacum HOM05D000005 ORTHO05D000012 1.0e-08 63.9 67 50.7
CSS0049718 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.3e-08 63.5 70 52.9
CAN.G1379.4 Capsicum annuum HOM05D000005 ORTHO05D000012 1.3e-08 63.5 79 44.3
Prupe.2G126100 Prunus persica HOM05D000005 ORTHO05D000012 1.3e-08 63.5 73 43.8
Prupe.2G135600 Prunus persica HOM05D000005 ORTHO05D000012 1.3e-08 63.5 71 47.9
RcHm_v2.0_Chr1g0348431 Rosa chinensis HOM05D000005 ORTHO05D000012 1.3e-08 63.5 72 48.6
PGSC0003DMG400018256 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.3e-08 63.5 79 43.0
CSS0014612 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.7e-08 63.2 70 45.7
FvH4_2g17330 Fragaria vesca HOM05D000005 ORTHO05D000012 1.7e-08 63.2 70 47.1
FAN24G1899 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-08 63.2 70 47.1
FAN27G2335 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-08 63.2 70 47.1
Prupe.8G185200 Prunus persica HOM05D000005 ORTHO05D000012 1.7e-08 63.2 72 44.4
RcHm_v2.0_Chr1g0348321 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-08 63.2 71 45.1
Sopen01g044060 Solanum pennellii HOM05D000005 ORTHO05D000012 1.7e-08 63.2 70 47.1
FAN06G2906 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.3e-08 62.8 71 43.7
FAN27G3393 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.3e-08 62.8 70 47.1
MD08G1019000 Malus domestica HOM05D000005 ORTHO05D000012 2.3e-08 62.8 71 49.3
MD17G1072500 Malus domestica HOM05D000005 ORTHO05D000012 3.0e-08 62.4 70 45.7
Solyc01g102850.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.0e-08 62.4 79 40.5
Sopen01g045250 Solanum pennellii HOM05D000005 ORTHO05D000012 3.0e-08 62.4 79 40.5
Cpa.g.sc4.82 Carica papaya HOM05D000005 ORTHO05D000012 3.9e-08 62.0 74 45.9
RcHm_v2.0_Chr1g0348371 Rosa chinensis HOM05D000005 ORTHO05D000012 3.9e-08 62.0 72 43.1
FvH4_7g10750 Fragaria vesca HOM05D000005 ORTHO05D000012 5.1e-08 61.6 71 43.7
Duzib268G1757 Durio zibethinus HOM05D000005 ORTHO05D000012 6.6e-08 61.2 67 47.8
MD12G1193200 Malus domestica HOM05D000005 ORTHO05D000012 6.6e-08 61.2 69 50.7
MD02G1302100 Malus domestica HOM05D000005 ORTHO05D000012 8.7e-08 60.8 71 46.5
RcHm_v2.0_Chr1g0328491 Rosa chinensis HOM05D000009 ORTHO05D000008 8.7e-08 60.8 96 40.6
Actinidia00144 Actinidia chinensis HOM05D000005 ORTHO05D000012 1.1e-07 60.5 72 41.7
CiPaw.15G124400 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.1e-07 60.5 63 42.9
COL.COLO4_36369 Corchorus olitorius HOM05D000005 ORTHO05D000012 1.1e-07 60.5 67 46.3
Sopen02g010550 Solanum pennellii HOM05D000005 ORTHO05D000012 1.1e-07 60.5 71 43.7
CSS0039985 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.5e-07 60.1 68 42.6
QL12p023260 Quercus lobata HOM05D000005 ORTHO05D000012 1.5e-07 60.1 66 47.0
Solyc01g113620.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 1.5e-07 60.1 68 44.1
Thecc.05G210700 Theobroma cacao HOM05D000005 ORTHO05D000012 1.5e-07 60.1 69 44.9
TWI36G1442 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.5e-07 60.1 69 49.3
Duzib268G1112 Durio zibethinus HOM05D000005 ORTHO05D000012 1.9e-07 59.7 64 48.4
Prupe.2G126400 Prunus persica HOM05D000005 ORTHO05D000012 1.9e-07 59.7 72 47.2
Prupe.2G126600 Prunus persica HOM05D000005 ORTHO05D000012 1.9e-07 59.7 71 46.5
CiPaw.15G167800 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.5e-07 59.3 65 47.7
Duzib268G1448 Durio zibethinus HOM05D000005 ORTHO05D000012 2.5e-07 59.3 66 47.0
MD05G1152200 Malus domestica HOM05D000005 ORTHO05D000012 2.5e-07 59.3 72 48.6
MD07G1112300 Malus domestica HOM05D000005 ORTHO05D000012 2.5e-07 59.3 71 45.1
Duzib128G1489 Durio zibethinus HOM05D000005 ORTHO05D000012 3.3e-07 58.9 49 57.1
RcHm_v2.0_Chr1g0336761 Rosa chinensis HOM05D000009 ORTHO05D000008 3.3e-07 58.9 49 57.1
TWI23G0009 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 3.3e-07 58.9 69 42.0
Duzib268G0041 Durio zibethinus HOM05D000005 ORTHO05D000012 4.3e-07 58.5 66 47.0
Hma1.2p1_0812F.1_g222300 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 4.3e-07 58.5 79 43.0
CSS0032356 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.6e-07 58.2 70 44.3
Lsat_1_v5_gn_4_150461 Lactuca sativa HOM05D000005 ORTHO05D000012 5.6e-07 58.2 66 45.5
MD07G1123900 Malus domestica HOM05D000005 ORTHO05D000012 5.6e-07 58.2 48 58.3
MD08G1019900 Malus domestica HOM05D000005 ORTHO05D000012 5.6e-07 58.2 71 45.1
Potri.011G008868 Populus trichocarpa HOM05D000005 ORTHO05D000012 5.6e-07 58.2 70 42.9
Solyc02g032200.4 Solanum lycopersicum HOM05D000005 ORTHO05D000012 5.6e-07 58.2 71 42.3
arahy.Tifrunner.gnm1.ann1.82EEBY Arachis hypogaea HOM05D000005 ORTHO05D000012 7.3e-07 57.8 56 51.8
arahy.Tifrunner.gnm1.ann1.G052FX Arachis hypogaea HOM05D000005 ORTHO05D000012 7.3e-07 57.8 56 51.8
Manes.09G158500 Manihot esculenta HOM05D000005 ORTHO05D000012 7.3e-07 57.8 70 41.4
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 7.3e-07 57.8 67 41.8
RcHm_v2.0_Chr1g0346831 Rosa chinensis HOM05D000005 ORTHO05D000012 7.3e-07 57.8 71 46.5
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 9.6e-07 57.4 69 40.6
Prupe.2G126900 Prunus persica HOM05D000005 ORTHO05D000012 9.6e-07 57.4 69 44.9
RcHm_v2.0_Chr1g0348421 Rosa chinensis HOM05D000005 ORTHO05D000012 9.6e-07 57.4 71 46.5
Lalb_Chr22g0354031 Lupinus albus HOM05D000005 ORTHO05D000012 1.3e-06 57.0 66 45.5
CiPaw.15G157400 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.6e-06 56.6 68 39.7
MD02G1264800 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-06 56.6 71 46.5
RcHm_v2.0_Chr1g0348311 Rosa chinensis HOM05D000005 ORTHO05D000012 1.6e-06 56.6 72 41.7
Lsat_1_v5_gn_4_147380 Lactuca sativa HOM05D000005 ORTHO05D000012 2.1e-06 56.2 64 45.3
MD15G1376300 Malus domestica HOM05D000005 ORTHO05D000012 2.1e-06 56.2 72 36.1
Manes.11G061000 Manihot esculenta HOM05D000005 ORTHO05D000012 2.1e-06 56.2 79 38.0
Sopen01g045290 Solanum pennellii HOM05D000005 ORTHO05D000012 2.1e-06 56.2 72 43.1
Thecc.06G027800 Theobroma cacao HOM05D000005 ORTHO05D000012 2.1e-06 56.2 70 42.9
CSS0017990 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.8e-06 55.8 72 44.4
Lsat_1_v5_gn_4_148200 Lactuca sativa HOM05D000005 ORTHO05D000012 2.8e-06 55.8 64 43.8
Medtr6g072460 Medicago truncatula HOM05D000005 ORTHO05D000012 2.8e-06 55.8 57 45.6
Medtr8g039870 Medicago truncatula HOM05D000005 ORTHO05D000012 2.8e-06 55.8 75 36.0
Medtr8g039910 Medicago truncatula HOM05D000005 ORTHO05D000012 2.8e-06 55.8 75 36.0
Potri.011G012801 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.8e-06 55.8 70 42.9
RcHm_v2.0_Chr1g0327301 Rosa chinensis HOM05D000009 ORTHO05D000008 2.8e-06 55.8 97 36.1
CAN.G1372.2 Capsicum annuum HOM05D000005 ORTHO05D000012 3.6e-06 55.5 72 43.1
Duzib268G0430 Durio zibethinus HOM05D000005 ORTHO05D000012 3.6e-06 55.5 69 43.5
Lsat_1_v5_gn_4_150641 Lactuca sativa HOM05D000005 ORTHO05D000012 3.6e-06 55.5 66 40.9
MD15G1432700 Malus domestica HOM05D000005 ORTHO05D000294 3.6e-06 55.5 64 42.2
Potri.011G012950 Populus trichocarpa HOM05D000005 ORTHO05D000012 3.6e-06 55.5 70 41.4
RcHm_v2.0_Chr1g0336831 Rosa chinensis HOM05D000009 ORTHO05D000008 3.6e-06 55.5 68 45.6
RcHm_v2.0_Chr4g0386831 Rosa chinensis HOM05D000005 ORTHO05D000012 3.6e-06 55.5 73 39.7
arahy.Tifrunner.gnm1.ann1.F56ZG1 Arachis hypogaea HOM05D000005 ORTHO05D000012 4.8e-06 55.1 65 41.5
arahy.Tifrunner.gnm1.ann1.RYL35A Arachis hypogaea HOM05D000005 ORTHO05D000012 4.8e-06 55.1 65 41.5
Duzib268G1802 Durio zibethinus HOM05D000005 ORTHO05D000012 4.8e-06 55.1 67 41.8
MD08G1018200 Malus domestica HOM05D000005 ORTHO05D000012 4.8e-06 55.1 71 42.3
Potri.011G013450 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.8e-06 55.1 71 38.0
Prupe.6G083400 Prunus persica HOM05D000005 ORTHO05D000012 4.8e-06 55.1 72 40.3
Solyc01g102880.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 4.8e-06 55.1 50 54.0
Sopen11g008710 Solanum pennellii HOM05D000005 ORTHO05D000012 4.8e-06 55.1 71 39.4
Thecc.05G210400 Theobroma cacao HOM05D000005 ORTHO05D000012 4.8e-06 55.1 49 55.1
Thecc.06G026300 Theobroma cacao HOM05D000005 ORTHO05D000012 4.8e-06 55.1 70 41.4
Actinidia02390 Actinidia chinensis HOM05D000005 ORTHO05D000012 6.2e-06 54.7 62 50.0
Dinv29641 Davidia involucrata HOM05D000005 ORTHO05D000012 6.2e-06 54.7 51 56.9
Lsat_1_v5_gn_4_150561 Lactuca sativa HOM05D000005 ORTHO05D000012 6.2e-06 54.7 64 46.9
Lj2g0003022 Lotus japonicus HOM05D000005 ORTHO05D000012 6.2e-06 54.7 65 40.0
RcHm_v2.0_Chr7g0225191 Rosa chinensis HOM05D000005 ORTHO05D000012 6.2e-06 54.7 63 41.3
Sed0018635 Sechium edule HOM05D000005 ORTHO05D000012 6.2e-06 54.7 67 47.8
PGSC0003DMG400007743 Solanum tuberosum HOM05D000005 ORTHO05D000012 6.2e-06 54.7 70 40.0
CiPaw.13G075900 Carya illinoinensis HOM05D000005 ORTHO05D000012 8.1e-06 54.3 72 38.9
CiPaw.13G076100 Carya illinoinensis HOM05D000005 ORTHO05D000012 8.1e-06 54.3 72 40.3
Lsat_1_v5_gn_4_148140 Lactuca sativa HOM05D000005 ORTHO05D000012 8.1e-06 54.3 66 43.9
Potri.011G008292 Populus trichocarpa HOM05D000005 ORTHO05D000012 8.1e-06 54.3 69 42.0
Prupe.3G010100 Prunus persica HOM05D000005 ORTHO05D000012 8.1e-06 54.3 72 38.9
RcHm_v2.0_Chr6g0267621 Rosa chinensis HOM05D000005 ORTHO05D000012 8.1e-06 54.3 56 48.2
Sopen02g010920 Solanum pennellii HOM05D000005 ORTHO05D000012 8.1e-06 54.3 75 40.0


User provided reference genes

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