Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 2173.7 1087 100.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1906.7 1085 86.6
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1899.0 1087 86.0
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1862.4 1088 84.7
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1862.0 1088 84.7
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1854.3 1115 82.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1848.2 1081 84.6
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1840.1 1085 83.3
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1828.9 1089 83.0
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1827.0 1085 84.1
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1805.4 1073 82.4
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1770.4 1087 80.4
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1770.4 1083 80.5
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1762.3 1088 80.3
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1758.8 1089 80.5
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1749.6 1080 80.5
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1749.2 1090 79.7
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1748.4 1083 80.1
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1747.3 1083 78.6
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1746.5 1087 79.0
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1746.1 1097 78.4
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1743.0 1086 79.7
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1741.9 1091 80.0
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1740.7 1073 80.3
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1737.2 1083 78.7
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1735.3 1081 79.2
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1730.7 1087 78.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1730.7 1087 78.4
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1729.9 1081 78.7
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1729.9 1087 78.6
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1729.5 1079 78.4
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1728.4 1086 79.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1723.4 1081 78.6
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1722.6 1087 78.0
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1722.6 1106 77.0
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1721.1 1095 78.0
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1721.1 1086 77.6
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1716.4 1081 78.3
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1715.3 1079 79.1
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1714.9 1083 77.7
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1713.7 1075 77.9
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1712.2 1083 77.8
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1711.0 1088 78.7
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1709.9 1068 79.5
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1708.7 1169 74.0
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1708.0 1085 77.2
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1092 78.1
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1081 77.9
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1079 77.5
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1703.7 1077 77.4
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1701.0 1079 77.5
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1700.3 1082 76.4
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1700.3 1083 76.7
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1698.7 1169 73.7
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1698.3 1079 77.2
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1697.9 1089 77.0
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1694.1 1084 77.0
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1693.7 1090 76.5
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1691.8 1088 77.5
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1689.9 1089 76.8
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1687.9 1076 77.5
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1686.0 1089 76.8
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1681.0 1103 75.2
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1681.0 1083 76.0
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1679.8 1088 77.0
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1678.3 1090 75.0
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1677.1 1085 77.1
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1674.4 1078 76.8
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1673.7 1082 75.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1673.7 1082 75.4
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1673.3 1084 76.5
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1669.8 994 82.7
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1666.7 1109 76.1
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1665.2 1015 81.0
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1661.4 1085 75.7
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1654.8 1085 75.5
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1654.4 1149 71.3
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1651.3 1108 74.0
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1650.6 1078 75.0
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1650.6 1088 76.4
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1624.8 1084 74.0
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1619.4 1079 73.9
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1619.0 1079 74.1
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1617.1 1079 73.8
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1617.1 1097 74.3
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1616.7 1086 73.3
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1612.4 1079 74.4
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1612.4 1068 74.3
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1610.5 1079 74.1
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1605.9 1079 73.7
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1602.4 1079 73.0
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1600.9 1079 73.6
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1600.9 1079 73.6
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1600.9 1077 74.1
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1600.1 1073 73.3
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1079 72.4
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1595.9 1079 73.0
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1594.7 1079 73.4
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1593.6 1079 73.3
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1593.6 1079 73.3
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1590.1 1088 74.2
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1574.3 1084 72.8
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 995 78.7
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1109 70.2
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1049 73.3
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1543.9 980 77.7
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1109 69.7
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1523.5 1076 69.3
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1506.9 1088 72.4
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1494.2 1009 75.7
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1462.6 1096 65.7
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1307.0 697 93.0
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1299.3 791 81.4
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1225.3 679 87.9
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1224.9 717 84.5
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1223.8 751 80.8
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1189.5 1078 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1188.3 1086 54.7
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1169.1 1120 52.5
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1161.0 1078 54.4
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1133.6 1079 52.8
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.6e-307 1058.9 837 62.7
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.7e-290 1003.0 814 65.0
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 5.0e-274 948.3 613 78.1
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 3.5e-267 925.6 692 69.9
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.7e-256 889.4 953 49.0
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 9.4e-249 864.4 988 51.3
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 6.6e-242 841.6 503 81.1
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.0e-234 817.8 632 64.9
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 4.9e-197 692.6 619 58.5
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.9e-170 603.2 447 69.4
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 7.9e-163 578.9 384 77.9
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.1e-155 554.3 311 85.5
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.5e-132 477.6 313 76.0
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.9e-87 328.6 290 59.3
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.8e-77 295.4 244 62.3
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.3e-69 268.5 205 66.3
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 5.7e-60 237.3 136 80.1
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.2e-54 219.5 138 72.5
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 1.4e-42 179.5 132 68.2
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.0e-36 159.1 186 48.4
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 2.0e-33 149.1 88 83.0
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.2e-28 133.3 156 47.4
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 7.5e-28 130.6 73 83.6
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 3.7e-27 128.3 109 59.6
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.3e-24 119.8 97 61.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 2.1e-22 112.5 147 44.9
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.8e-13 82.8 47 83.0
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 8.8e-13 80.5 76 44.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 9.8e-12 77.0 49 69.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.6e-09 69.7 33 97.0
Nitab4.5_0001494g0120 Nicotiana tabacum HOM05D000418 ORTHO05D000317 1.6e-06 59.7 237 23.2
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.6e-06 59.7 39 71.8
Nitab4.5_0002254g0010 Nicotiana tabacum HOM05D000418 ORTHO05D000317 2.8e-06 58.9 237 23.6


User provided reference genes

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