Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 3.5e-109 398.3 197 100.0
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.3e-95 353.2 197 87.8
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.9e-91 339.3 200 85.0
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.6e-88 328.9 195 81.5
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.8e-88 327.8 197 82.2
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.9e-86 322.8 197 79.7
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 5.1e-84 314.7 208 75.0
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 6.6e-84 314.3 197 76.6
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 3.6e-82 308.5 200 76.0
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 6.2e-82 307.8 198 75.8
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 8.1e-82 307.4 199 76.9
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.8e-81 306.2 197 76.1
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.0e-81 305.1 198 76.8
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 4.0e-81 305.1 198 76.8
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 5.2e-81 304.7 197 75.1
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 4.4e-80 301.6 198 75.3
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 4.4e-80 301.6 197 74.1
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 4.4e-80 301.6 197 74.1
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 9.9e-80 300.4 197 73.6
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.7e-79 299.7 198 73.7
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.7e-79 299.7 197 73.6
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.9e-78 296.2 198 75.8
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.1e-77 292.7 200 75.0
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.1e-77 292.7 197 72.6
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.7e-77 292.4 197 74.6
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.7e-77 292.4 207 71.5
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.3e-76 290.0 198 73.2
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 3.9e-76 288.5 199 70.9
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 5.1e-76 288.1 199 73.4
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 5.1e-76 288.1 200 72.5
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.1e-75 287.0 200 73.0
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.1e-75 287.0 195 73.3
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.3e-75 285.4 197 73.6
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 5.6e-75 284.6 197 73.1
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.2e-74 283.5 199 69.3
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.2e-74 283.5 197 71.6
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.6e-74 283.1 200 72.0
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 2.1e-74 282.7 204 69.1
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 3.6e-74 282.0 197 73.1
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.6e-74 282.0 204 69.6
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.4e-73 279.3 197 72.1
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 4.0e-73 278.5 199 70.9
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.8e-73 277.7 204 68.1
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 2.0e-72 276.2 198 69.7
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 2.0e-72 276.2 192 69.8
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 4.4e-72 275.0 197 67.0
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 4.4e-72 275.0 197 69.5
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 9.9e-72 273.9 199 67.3
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 9.9e-72 273.9 197 70.1
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 9.9e-72 273.9 192 69.3
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.9e-71 272.3 198 70.7
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.9e-71 272.3 198 70.2
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.9e-71 272.3 191 68.6
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 3.8e-71 271.9 197 69.0
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 4.9e-71 271.6 202 69.3
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.9e-71 271.6 198 70.7
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 4.9e-71 271.6 197 69.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.1e-70 270.4 206 65.5
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.4e-70 270.0 198 68.7
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 2.4e-70 269.2 184 71.7
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 3.2e-70 268.9 191 69.1
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 9.3e-70 267.3 257 58.8
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.2e-69 266.9 200 67.0
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.1e-69 266.2 184 72.8
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 2.7e-69 265.8 197 68.0
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 4.6e-69 265.0 206 64.6
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 6.0e-69 264.6 191 68.1
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 7.8e-69 264.2 206 64.1
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.0e-68 263.8 198 66.7
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.0e-68 263.8 212 63.2
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 3.9e-68 261.9 198 68.7
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 8.7e-68 260.8 198 69.2
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.9e-67 259.6 187 69.0
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.5e-67 259.2 198 65.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 4.3e-67 258.5 195 67.2
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 5.6e-67 258.1 212 62.7
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 7.3e-67 257.7 197 67.0
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.1e-66 256.1 211 63.5
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 2.1e-66 256.1 211 63.0
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 3.6e-66 255.4 199 67.8
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 6.2e-66 254.6 190 63.7
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.4e-65 253.4 198 64.1
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.8e-65 253.1 198 62.6
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.0e-64 249.6 197 66.0
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 2.6e-64 249.2 197 66.5
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 7.6e-64 247.7 193 66.3
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 9.9e-64 247.3 197 65.5
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.7e-63 246.5 163 74.8
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.1e-62 243.8 176 67.6
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.1e-62 243.8 198 61.6
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 1.2e-61 240.4 195 61.5
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 3.0e-60 235.7 199 60.8
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 3.0e-60 235.7 200 58.5
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 6.6e-60 234.6 197 60.4
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 8.7e-60 234.2 159 69.8
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.1e-59 233.8 300 47.7
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.3e-59 232.3 199 58.8
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 3.3e-59 232.3 190 61.6
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 9.6e-59 230.7 194 62.9
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 1.3e-58 230.3 190 61.1
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.3e-58 230.3 199 60.3
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.6e-58 229.9 198 62.1
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 2.4e-57 226.1 192 57.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 2.4e-57 226.1 197 58.9
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 5.3e-57 224.9 197 56.3
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.2e-56 223.8 197 56.3
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 1.5e-56 223.4 199 57.3
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 5.8e-56 221.5 198 59.1
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 8.4e-55 217.6 199 57.3
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.4e-54 216.9 197 57.9
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.4e-54 216.9 197 58.4
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 2.7e-53 212.6 197 54.3
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 2.7e-53 212.6 197 54.3
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.7e-53 212.6 188 59.0
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 3.5e-53 212.2 197 54.3
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 7.9e-53 211.1 200 54.5
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.0e-52 210.7 197 53.8
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.3e-52 210.3 197 59.4
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 3.1e-49 199.1 160 64.4
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.7e-47 193.4 198 53.0
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 6.5e-47 191.4 199 51.3
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.1e-46 190.7 126 69.0
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.5e-45 185.7 183 53.0
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.6e-45 185.3 171 55.6
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.8e-44 183.3 166 58.4
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 8.2e-42 174.5 174 50.6
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 1.8e-41 173.3 161 57.1
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 7.6e-40 167.9 189 54.0
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 3.2e-38 162.5 159 52.8
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 6.3e-34 148.3 100 74.0
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.8e-33 146.7 101 71.3
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 2.4e-33 146.4 142 47.2
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 6.9e-33 144.8 96 75.0
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.6e-32 142.9 100 71.0
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.0e-31 141.0 131 54.2
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 2.9e-31 139.4 101 62.4
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 2.7e-29 132.9 104 70.2
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 2.7e-29 132.9 122 51.6
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 9.7e-27 124.4 152 44.1
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.3e-26 124.0 117 58.1
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 4.8e-26 122.1 99 64.6
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.1e-25 120.9 151 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 2.4e-25 119.8 130 46.2
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 3.6e-21 105.9 97 59.8
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 7.9e-21 104.8 107 50.5
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 3.0e-20 102.8 116 46.6
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 3.0e-20 102.8 116 47.4
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.3e-18 97.4 101 46.5
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 7.0e-17 91.7 69 68.1
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.0e-15 85.5 101 49.5
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 5.0e-15 85.5 65 66.2
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.1e-14 84.3 127 35.4
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 8.0e-13 78.2 65 63.1
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 2.6e-11 73.2 114 36.8
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 3.3e-11 72.8 57 66.7
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 5.7e-11 72.0 45 73.3
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 1.7e-10 70.5 66 60.6
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 1.5e-06 57.4 61 49.2
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 7.2e-06 55.1 39 61.5


User provided reference genes

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