Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29491 Davidia involucrata HOM05D005353 ORTHO05D006248 1.9e-161 572.4 279 100.0
Hma1.2p1_1067F.1_g253910 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 4.0e-119 431.8 319 70.5
Nitab4.5_0007722g0010 Nicotiana tabacum HOM05D005353 ORTHO05D006248 1.4e-116 423.3 319 66.8
Nitab4.5_0000019g0100 Nicotiana tabacum HOM05D005353 ORTHO05D006248 8.1e-112 407.5 344 62.8
Oeu002498.1 Olea europaea HOM05D005353 ORTHO05D006248 1.8e-111 406.4 318 65.4
Actinidia39944 Actinidia chinensis HOM05D005353 ORTHO05D006248 4.0e-111 405.2 320 65.9
Peaxi162Scf01347g00135 Petunia axillaris HOM05D005353 ORTHO05D006248 4.5e-110 401.7 320 63.4
Peaxi162Scf00322g00917 Petunia axillaris HOM05D005353 ORTHO05D006248 7.6e-110 401.0 320 64.1
Cc04_g14300 Coffea canephora HOM05D005353 ORTHO05D006248 1.1e-108 397.1 321 65.1
Manes.12G155100 Manihot esculenta HOM05D005353 ORTHO05D006248 1.9e-108 396.4 321 64.5
Gohir.A08G228300 Gossypium hirsutum HOM05D005353 ORTHO05D006248 1.6e-107 393.3 319 63.6
Sc10g0003710 Simmondsia chinensis HOM05D005353 ORTHO05D006248 3.5e-107 392.1 320 64.1
GSVIVG01017718001 Vitis vinifera HOM05D005353 ORTHO05D006248 3.5e-107 392.1 323 63.8
CSS0044252 Camellia sinensis var. sinensis HOM05D005353 ORTHO05D006248 1.8e-106 389.8 317 65.3
Gohir.D08G248600 Gossypium hirsutum HOM05D005353 ORTHO05D006248 3.9e-106 388.7 319 63.3
Thecc.08G167300 Theobroma cacao HOM05D005353 ORTHO05D006248 5.1e-106 388.3 318 61.9
MSTRG.14933 Avicennia marina HOM05D005353 ORTHO05D006248 6.7e-106 387.9 317 63.4
MBI18_g03863_MAGBIO Magnolia biondii HOM05D005353 ORTHO05D006248 6.7e-106 387.9 320 62.2
Atru.chr4.3195 Acer truncatum HOM05D005353 ORTHO05D006248 1.1e-105 387.1 319 63.3
Gorai.004G265200 Gossypium raimondii HOM05D005353 ORTHO05D006248 1.1e-105 387.1 319 63.6
CiPaw.02G068200 Carya illinoinensis HOM05D005353 ORTHO05D006248 4.3e-105 385.2 321 64.2
PSO761G0146 Papaver somniferum HOM05D005353 ORTHO05D006248 7.4e-105 384.4 331 62.5
Solyc07g042930.3 Solanum lycopersicum HOM05D005353 ORTHO05D006248 9.6e-105 384.0 321 62.0
Cfa015762 Carpinus fangiana HOM05D005353 ORTHO05D006248 1.6e-104 383.3 322 64.6
Duzib116G0935 Durio zibethinus HOM05D005353 ORTHO05D006248 1.6e-104 383.3 319 62.7
Lalb_Chr12g0200451 Lupinus albus HOM05D005353 ORTHO05D006248 2.1e-104 382.9 323 62.5
Sopen07g022530 Solanum pennellii HOM05D005353 ORTHO05D006248 2.1e-104 382.9 321 62.0
THA.LOC104821816 Tarenaya hassleriana HOM05D005353 ORTHO05D006248 2.1e-104 382.9 321 61.1
Potri.010G004600 Populus trichocarpa HOM05D005353 ORTHO05D006248 2.8e-104 382.5 319 63.9
CAN.G1337.25 Capsicum annuum HOM05D005353 ORTHO05D006248 4.8e-104 381.7 322 62.1
QL06p014836 Quercus lobata HOM05D005353 ORTHO05D006248 8.1e-104 380.9 352 59.1
Hund17553 Selenicereus undatus HOM05D005353 ORTHO05D006248 8.1e-104 380.9 320 63.4
Haze_00741 Corylus avellana HOM05D005353 ORTHO05D006248 1.4e-103 380.2 322 64.6
Ciclev10021112m.g Citrus clementina HOM05D005353 ORTHO05D006248 2.4e-103 379.4 318 62.6
AUR62034345 Chenopodium quinoa HOM05D005353 ORTHO05D006248 6.9e-103 377.9 315 63.5
EL10Ac1g01664 Beta vulgaris HOM05D005353 ORTHO05D006248 2.0e-102 376.3 319 63.3
Lj6A705T54 Lonicera japonica HOM05D005353 ORTHO05D006248 2.6e-102 375.9 321 62.3
AUR62022362 Chenopodium quinoa HOM05D005353 ORTHO05D006248 3.4e-102 375.6 315 63.2
Sabra10G0004000 Salix brachista HOM05D005353 ORTHO05D006248 5.8e-102 374.8 319 61.8
PGSC0003DMG401013561 Solanum tuberosum HOM05D005353 ORTHO05D006248 1.7e-101 373.2 320 60.9
Rhsim02G0049500 Rhododendron simsii HOM05D005353 ORTHO05D006248 2.9e-101 372.5 309 64.4
TWI73G0458 Tripterygium wilfordii HOM05D005353 ORTHO05D006248 3.8e-101 372.1 319 61.4
Cpa.g.sc146.5 Carica papaya HOM05D005353 ORTHO05D006248 1.1e-100 370.5 318 63.2
ECA246G2061 Erigeron canadensis HOM05D005353 ORTHO05D006248 5.5e-100 368.2 320 61.9
HanXRQChr05g0148921 Helianthus annuus HOM05D005353 ORTHO05D006248 5.5e-100 368.2 323 61.3
RcHm_v2.0_Chr4g0428081 Rosa chinensis HOM05D005353 ORTHO05D006248 2.7e-99 365.9 324 57.4
DCAR_023424 Daucus carota HOM05D005353 ORTHO05D006248 6.0e-99 364.8 326 60.7
FvH4_4g21840 Fragaria vesca HOM05D005353 ORTHO05D006248 1.0e-98 364.0 324 58.0
FAN07G1699 Fragaria x ananassa HOM05D005353 ORTHO05D006248 1.8e-98 363.2 324 58.0
Prupe.1G209100 Prunus persica HOM05D005353 ORTHO05D006248 1.8e-98 363.2 325 58.8
FAN12G4199 Fragaria x ananassa HOM05D005353 ORTHO05D006248 3.0e-98 362.5 324 57.7
PGR004G1856 Punica granatum HOM05D005353 ORTHO05D006248 3.9e-98 362.1 318 61.6
Eucgr.H04153 Eucalyptus grandis HOM05D005353 ORTHO05D006248 5.1e-98 361.7 321 60.1
Carub.0003s1733 Capsella rubella HOM05D005353 ORTHO05D006248 7.4e-97 357.8 321 56.1
CANSAT78G1361 Cannabis sativa HOM05D005353 ORTHO05D006248 1.6e-96 356.7 331 58.6
Aa31LG8G4490 Aethionema arabicum HOM05D005353 ORTHO05D006248 2.8e-96 355.9 320 58.4
CARHR092930 Cardamine hirsuta HOM05D005353 ORTHO05D006248 6.2e-96 354.8 321 55.8
FAN17G0053 Fragaria x ananassa HOM05D005353 ORTHO05D006248 6.2e-96 354.8 324 57.1
AL3G30690 Arabidopsis lyrata HOM05D005353 ORTHO05D006248 8.1e-96 354.4 321 55.8
AT3G17611 Arabidopsis thaliana HOM05D005353 ORTHO05D006248 1.1e-95 354.0 321 55.5
COL.COLO4_25111 Corchorus olitorius HOM05D005353 ORTHO05D006248 1.1e-95 354.0 316 60.8
Thhalv10021096m.g Eutrema salsugineum HOM05D005353 ORTHO05D006248 1.1e-95 354.0 321 56.1
Sp3g15750 Schrenkiella parvula HOM05D005353 ORTHO05D006248 1.1e-95 354.0 321 56.1
BcaB04g20833 Brassica carinata HOM05D005353 ORTHO05D006248 6.9e-95 351.3 323 55.1
vmacro15495 Vaccinium macrocarpon HOM05D005353 ORTHO05D006248 6.9e-95 351.3 388 52.6
Lj2g0027327 Lotus japonicus HOM05D005353 ORTHO05D006248 1.2e-94 350.5 322 57.5
SGA_v2.0_scaffold73G24528 Striga asiatica HOM05D005353 ORTHO05D006248 1.2e-94 350.5 319 60.8
SalBow7G1146 Salvia bowleyana HOM05D005353 ORTHO05D006248 1.5e-94 350.1 317 59.0
Ca_21356_v3 Cicer arietinum L. HOM05D005353 ORTHO05D006248 2.6e-94 349.4 335 57.0
BcaC09g48719 Brassica carinata HOM05D005353 ORTHO05D006248 3.4e-94 349.0 325 55.1
A01p36730 Brassica napus HOM05D005353 ORTHO05D006248 4.5e-94 348.6 325 55.1
C01p46630 Brassica napus HOM05D005353 ORTHO05D006248 1.3e-93 347.1 325 54.5
BraA01t03734Z Brassica rapa HOM05D005353 ORTHO05D006248 2.2e-93 346.3 324 54.9
C05p48760 Brassica napus HOM05D005353 ORTHO05D006248 2.9e-93 345.9 324 54.9
BolC5t33612H Brassica oleracea HOM05D005353 ORTHO05D006248 2.9e-93 345.9 324 54.9
BolC1t04628H Brassica oleracea HOM05D005353 ORTHO05D006248 6.5e-93 344.7 324 54.3
arahy.Tifrunner.gnm1.ann1.XSBG43 Arachis hypogaea HOM05D005353 ORTHO05D006248 8.4e-93 344.4 324 55.9
Aqoxy2G00444 Aquilegia oxysepala HOM05D005353 ORTHO05D006248 1.1e-92 344.0 316 59.8
MELO3C008914.2 Cucumis melo HOM05D005353 ORTHO05D006248 1.4e-92 343.6 317 57.7
arahy.Tifrunner.gnm1.ann1.ETFP64 Arachis hypogaea HOM05D005353 ORTHO05D006248 1.9e-92 343.2 324 57.1
CsaV3_4G030510 Cucumis sativus L. HOM05D005353 ORTHO05D006248 5.5e-92 341.7 319 57.4
BcaC05g28769 Brassica carinata HOM05D005353 ORTHO05D006248 9.3e-92 340.9 323 54.2
Psat4g020440 Pisum sativum HOM05D005353 ORTHO05D006248 9.3e-92 340.9 327 56.0
Glyma.13G116600 Glycine max HOM05D005353 ORTHO05D006248 6.0e-91 338.2 319 54.9
Glyma.17G043300 Glycine max HOM05D005353 ORTHO05D006248 6.0e-91 338.2 319 54.9
Cfa015759 Carpinus fangiana HOM05D005353 ORTHO05D006248 7.9e-91 337.8 324 60.5
VMungo1215G2294 Vigna mungo HOM05D005353 ORTHO05D006248 1.0e-90 337.4 320 55.0
Medtr4g123573 Medicago truncatula HOM05D005353 ORTHO05D006248 1.3e-90 337.0 325 53.5
BraA05t22052Z Brassica rapa HOM05D005353 ORTHO05D006248 3.0e-90 335.9 322 54.7
ClCG04G002200 Citrullus lanatus HOM05D005353 ORTHO05D006248 3.0e-90 335.9 321 56.1
A05p32220 Brassica napus HOM05D005353 ORTHO05D006248 6.7e-90 334.7 321 54.5
ATR0796G336 Amborella trichopoda HOM05D005353 ORTHO05D006248 8.7e-90 334.3 324 54.9
Phvul.003G125100 Phaseolus vulgaris HOM05D005353 ORTHO05D006248 1.3e-88 330.5 320 53.8
Sed0018181 Sechium edule HOM05D005353 ORTHO05D006248 1.3e-88 330.5 321 55.1
Migut.M00009 Erythranthe guttata HOM05D005353 ORTHO05D006248 1.6e-88 330.1 323 54.5
HPP92_012759 Vanilla planifolia HOM05D005353 ORTHO05D006248 3.7e-88 328.9 318 55.0
Lsat_1_v5_gn_0_37861 Lactuca sativa HOM05D005353 ORTHO05D006248 1.8e-87 326.6 319 55.8
Zm00001eb332500 Zea mays HOM05D005353 ORTHO05D006248 1.5e-81 307.0 327 51.4
Zm00001eb227080 Zea mays HOM05D005353 ORTHO05D006248 3.7e-80 302.4 326 50.3
TPR.G12683 Trifolium pratense HOM05D005353 ORTHO05D006248 1.8e-79 300.1 325 52.3
Os01g0283500 Oryza sativa ssp. japonica HOM05D005353 ORTHO05D006248 3.1e-79 299.3 327 50.5
SEGI_40739 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 1.7e-77 293.5 336 49.1
SHI11368 Sapria himalayana HOM05D005353 ORTHO05D006248 3.2e-76 289.3 363 47.1
BcaB06g25831 Brassica carinata HOM05D005353 ORTHO05D006248 1.0e-74 284.3 280 55.0
TAR633G0169 Trochodendron aralioides HOM05D005353 ORTHO05D006248 8.8e-74 281.2 206 70.9
Solyc05g016380.4 Solanum lycopersicum HOM05D005353 ORTHO05D006248 1.0e-69 267.7 362 43.6
PSO210G1641 Papaver somniferum HOM05D005353 ORTHO05D006248 1.4e-68 263.8 209 66.0
Pp3c15_4650 Physcomitrium patens HOM05D005353 ORTHO05D006248 9.7e-65 251.1 332 44.9
Pp3c9_8740 Physcomitrium patens HOM05D005353 ORTHO05D006248 1.7e-64 250.4 345 44.1
Lsat_1_v5_gn_6_61961 Lactuca sativa HOM05D005353 ORTHO05D006248 5.5e-60 235.3 258 52.3
CAN.G1337.26 Capsicum annuum HOM05D005353 ORTHO05D006248 6.1e-59 231.9 286 49.3
CAN.G357.8 Capsicum annuum HOM05D005353 ORTHO05D006248 1.8e-58 230.3 228 54.8
PGSC0003DMG400037053 Solanum tuberosum HOM05D005353 ORTHO05D006248 2.0e-57 226.9 170 68.2
Mapoly0061s0084 Marchantia polymorpha HOM05D005353 ORTHO05D006248 2.6e-57 226.5 332 40.1
Haze_00742 Corylus avellana HOM05D005353 ORTHO05D006248 1.2e-49 201.1 238 50.4
MD13G1136300 Malus domestica HOM05D005353 ORTHO05D006248 1.6e-46 190.7 187 54.0
CDE02G2900 Ceratophyllum demersum HOM05D005353 ORTHO05D006248 4.5e-46 189.1 181 58.6
Sopen05g013630 Solanum pennellii HOM05D005353 ORTHO05D006248 5.9e-46 188.7 138 68.8
CBR_g40142 Chara braunii HOM05D005353 ORTHO05D006248 6.8e-42 175.3 378 33.3
unitig_746.g26623 Utricularia gibba HOM05D000651 ORTHO05D001126 2.1e-35 153.7 163 49.7
Hma1.2p1_3133F.1_g332970 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 7.0e-31 138.7 127 60.6
AagrBONN_evm.TU.Sc2ySwM_368.2528 Anthoceros agrestis HOM05D005353 ORTHO05D006248 2.3e-29 133.7 372 29.6
Lsat_1_v5_gn_4_185280 Lactuca sativa HOM05D005353 ORTHO05D006248 2.5e-28 130.2 87 67.8
SMO367G0940 Selaginella moellendorffii HOM05D005353 ORTHO05D006248 2.8e-27 126.7 111 56.8
Hma1.2p1_3133F.1_g332980 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 4.1e-23 112.8 59 88.1
CDE09G0037 Ceratophyllum demersum HOM05D005353 ORTHO05D006248 3.9e-21 106.3 111 54.1
Cre03.g204400 Chlamydomonas reinhardtii HOM05D005353 ORTHO05D006248 3.3e-20 103.2 219 33.3
Nn4g25269 Nelumbo nucifera HOM05D005353 ORTHO05D006248 1.2e-19 101.3 75 70.7
AagrBONN_evm.TU.Sc2ySwM_368.2525 Anthoceros agrestis HOM05D005353 ORTHO05D006248 2.6e-17 93.6 165 37.0
CDE02G3498 Ceratophyllum demersum HOM05D005353 ORTHO05D006248 2.6e-17 93.6 59 76.3
Gohir.A01G135700 Gossypium hirsutum HOM05D005353 ORTHO05D006248 3.4e-17 93.2 65 67.7
Gohir.A10G195100 Gossypium hirsutum HOM05D005353 ORTHO05D006248 4.4e-17 92.8 59 72.9
Gohir.A06G072800 Gossypium hirsutum HOM05D005353 ORTHO05D006248 1.1e-15 88.2 59 72.9
SEGI_08776 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 5.4e-15 85.9 117 40.2
Gohir.A01G140678 Gossypium hirsutum HOM05D005353 ORTHO05D006248 2.1e-14 84.0 61 67.2
SEGI_33584 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 4.3e-12 76.3 51 68.6
MCO13G118 Micromonas commoda HOM05D005353 ORTHO05D006248 7.3e-12 75.5 204 27.9
AagrBONN_evm.TU.Sc2ySwM_368.2527 Anthoceros agrestis HOM05D005353 ORTHO05D006248 2.1e-11 73.9 181 31.5
SEGI_22454 Sequoiadendron giganteum HOM05D022269 ORTHO05D006248 3.1e-10 70.1 291 24.7
SEGI_37450 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 1.2e-09 68.2 53 56.6
SEGI_37310 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 2.0e-09 67.4 49 59.2
SEGI_13183 Sequoiadendron giganteum HOM05D000649 ORTHO05D006248 4.4e-09 66.2 56 53.6
Mapoly0022s0048 Marchantia polymorpha HOM05D006729 ORTHO05D008502 3.8e-08 63.2 187 28.9
Zm00001eb052940 Zea mays HOM05D006729 ORTHO05D008502 4.9e-08 62.8 199 27.1
SEGI_34128 Sequoiadendron giganteum HOM05D022269 ORTHO05D384815 1.4e-07 61.2 220 25.9
CDE10G0526 Ceratophyllum demersum HOM05D006729 ORTHO05D008502 1.9e-07 60.8 189 27.0
Lsat_1_v5_gn_1_56360 Lactuca sativa HOM05D006729 ORTHO05D008502 5.4e-07 59.3 161 28.0
PSO384G1090 Papaver somniferum HOM05D006729 ORTHO05D008502 5.4e-07 59.3 196 26.5
Aqoxy1G00566 Aquilegia oxysepala HOM05D006729 ORTHO05D008502 7.1e-07 58.9 187 26.2
Carub.0005s2520 Capsella rubella HOM05D006729 ORTHO05D008502 7.1e-07 58.9 227 27.8
Os03g0651100 Oryza sativa ssp. japonica HOM05D006729 ORTHO05D008502 7.1e-07 58.9 199 27.1
CDE07G1895 Ceratophyllum demersum HOM05D006729 ORTHO05D008502 1.2e-06 58.2 136 28.7
Actinidia06196 Actinidia chinensis HOM05D006729 ORTHO05D008502 1.6e-06 57.8 158 28.5
Cpa.g.sc85.5 Carica papaya HOM05D006729 ORTHO05D008502 1.6e-06 57.8 159 27.7
MELO3C008786.2 Cucumis melo HOM05D006729 ORTHO05D008502 1.6e-06 57.8 159 28.3
MD12G1049100 Malus domestica HOM05D006729 ORTHO05D008502 1.6e-06 57.8 158 29.7
PSO339G2226 Papaver somniferum HOM05D006729 ORTHO05D008502 1.6e-06 57.8 196 25.5
SMO364G0815 Selaginella moellendorffii HOM05D006729 ORTHO05D008502 1.6e-06 57.8 189 25.9
SEGI_08167 Sequoiadendron giganteum HOM05D022269 ORTHO05D384124 1.6e-06 57.8 196 28.1
Cc06_g07110 Coffea canephora HOM05D006729 ORTHO05D008502 2.1e-06 57.4 158 27.8
CsaV3_4G013460 Cucumis sativus L. HOM05D006729 ORTHO05D008502 2.1e-06 57.4 159 28.3
QL07p025843 Quercus lobata HOM05D006729 ORTHO05D008502 2.1e-06 57.4 158 29.1
Haze_20087 Corylus avellana HOM05D006729 ORTHO05D008502 2.7e-06 57.0 158 29.1
RcHm_v2.0_Chr3g0477721 Rosa chinensis HOM05D006729 ORTHO05D008502 2.7e-06 57.0 187 26.7
Actinidia07956 Actinidia chinensis HOM05D006729 ORTHO05D008502 3.5e-06 56.6 161 27.3
Dinv25092 Davidia involucrata HOM05D006729 ORTHO05D008502 4.6e-06 56.2 158 27.8
FvH4_6g21260 Fragaria vesca HOM05D006729 ORTHO05D008502 4.6e-06 56.2 158 27.8
AagrBONN_evm.TU.Sc2ySwM_228.4371 Anthoceros agrestis HOM05D006729 ORTHO05D008502 6.0e-06 55.8 160 27.5
AL5G40220 Arabidopsis lyrata HOM05D006729 ORTHO05D008502 6.0e-06 55.8 195 28.2
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 6.0e-06 55.8 190 27.9
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 6.0e-06 55.8 190 27.9
ClCG04G005160 Citrullus lanatus HOM05D006729 ORTHO05D008502 6.0e-06 55.8 148 27.0
ECA248G1919 Erigeron canadensis HOM05D006729 ORTHO05D008502 6.0e-06 55.8 187 26.2
HanXRQChr01g0026291 Helianthus annuus HOM05D006729 ORTHO05D008502 6.0e-06 55.8 187 26.7
HPP92_017665 Vanilla planifolia HOM05D006729 ORTHO05D008502 6.0e-06 55.8 190 26.3
CiPaw.09G025400 Carya illinoinensis HOM05D006729 ORTHO05D008502 7.8e-06 55.5 187 26.7
Pp3c8_11670 Physcomitrium patens HOM05D006729 ORTHO05D008502 7.8e-06 55.5 190 28.9
GSVIVG01022493001 Vitis vinifera HOM05D006729 ORTHO05D008502 7.8e-06 55.5 158 27.2


User provided reference genes

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