Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29364 Davidia involucrata HOM05D002446 ORTHO05D002941 6.0e-58 227.3 111 100.0
Haze_23730 Corylus avellana HOM05D002446 ORTHO05D002941 1.5e-40 169.5 105 74.3
Cfa010305 Carpinus fangiana HOM05D002446 ORTHO05D002941 7.3e-40 167.2 102 74.5
TAR633G0467 Trochodendron aralioides HOM05D002446 ORTHO05D002941 4.0e-38 161.4 105 68.6
QL01p015626 Quercus lobata HOM05D002446 ORTHO05D002941 7.6e-37 157.1 103 72.8
Duzib168G0452 Durio zibethinus HOM05D002446 ORTHO05D002941 2.9e-36 155.2 105 71.4
RcHm_v2.0_Chr5g0057471 Rosa chinensis HOM05D002446 ORTHO05D002941 4.9e-36 154.5 102 69.6
FvH4_3g30940 Fragaria vesca HOM05D002446 ORTHO05D002941 1.1e-35 153.3 106 66.0
FAN16G1400 Fragaria x ananassa HOM05D002446 ORTHO05D002941 5.4e-35 151.0 106 68.9
Atru.chr3.3539 Acer truncatum HOM05D002446 ORTHO05D002941 9.3e-35 150.2 102 71.6
Ciclev10028210m.g Citrus clementina HOM05D002446 ORTHO05D002941 9.3e-35 150.2 102 67.6
Rhsim13G0099400 Rhododendron simsii HOM05D002446 ORTHO05D002941 2.7e-34 148.7 102 72.5
Actinidia24135 Actinidia chinensis HOM05D002446 ORTHO05D002941 3.5e-34 148.3 105 68.6
FAN25G2647 Fragaria x ananassa HOM05D002446 ORTHO05D002941 3.5e-34 148.3 106 68.9
Prupe.6G109300 Prunus persica HOM05D002446 ORTHO05D002941 3.5e-34 148.3 103 69.9
CSS0041005 Camellia sinensis var. sinensis HOM05D002446 ORTHO05D002941 4.6e-34 147.9 106 71.7
Thecc.09G349400 Theobroma cacao HOM05D002446 ORTHO05D002941 7.9e-34 147.1 105 68.6
Sabra09G0004000 Salix brachista HOM05D002446 ORTHO05D002941 1.8e-33 146.0 105 65.7
COL.COLO4_11064 Corchorus olitorius HOM05D002446 ORTHO05D002941 3.0e-33 145.2 100 69.0
Oeu018478.1 Olea europaea HOM05D002446 ORTHO05D002941 3.9e-33 144.8 110 62.7
CSS0045964 Camellia sinensis var. sinensis HOM05D002446 ORTHO05D002941 5.1e-33 144.4 106 70.8
COL.COLO4_11063 Corchorus olitorius HOM05D002446 ORTHO05D002941 1.9e-32 142.5 104 66.3
vmacro03266 Vaccinium macrocarpon HOM05D002446 ORTHO05D002941 1.9e-32 142.5 102 69.6
TWI31G1393 Tripterygium wilfordii HOM05D002446 ORTHO05D002941 3.3e-32 141.7 103 64.1
Gohir.D08G217500 Gossypium hirsutum HOM05D002446 ORTHO05D002941 9.6e-32 140.2 107 64.5
Gohir.A08G200300 Gossypium hirsutum HOM05D002446 ORTHO05D002941 2.8e-31 138.7 107 63.6
Cpa.g.sc65.36 Carica papaya HOM05D002446 ORTHO05D002941 3.7e-31 138.3 105 58.1
Lj3g0002991 Lotus japonicus HOM05D002446 ORTHO05D002941 3.7e-31 138.3 107 56.1
Potri.009G006900 Populus trichocarpa HOM05D002446 ORTHO05D002941 4.8e-31 137.9 105 63.8
MD00G1032500 Malus domestica HOM05D002446 ORTHO05D002941 8.1e-31 137.1 103 65.0
Oeu029890.1 Olea europaea HOM05D002446 ORTHO05D002941 8.1e-31 137.1 105 61.9
Gorai.004G231200 Gossypium raimondii HOM05D002446 ORTHO05D002941 1.1e-30 136.7 107 63.6
Phvul.005G131200 Phaseolus vulgaris HOM05D002446 ORTHO05D002941 1.8e-30 136.0 101 60.4
VMungo1080G0537 Vigna mungo HOM05D002446 ORTHO05D002941 1.8e-30 136.0 101 59.4
Lj2A1012T37 Lonicera japonica HOM05D002446 ORTHO05D002941 3.1e-30 135.2 108 63.0
Glyma.13G322800 Glycine max HOM05D002446 ORTHO05D002941 6.9e-30 134.0 105 58.1
Lalb_Chr14g0374471 Lupinus albus HOM05D002446 ORTHO05D002941 9.0e-30 133.7 107 59.8
TPR.G11628 Trifolium pratense HOM05D002446 ORTHO05D002941 9.0e-30 133.7 106 58.5
Eucgr.J00367 Eucalyptus grandis HOM05D002446 ORTHO05D002941 1.2e-29 133.3 100 60.0
Nitab4.5_0000329g0260 Nicotiana tabacum HOM05D002446 ORTHO05D002941 1.2e-29 133.3 105 61.0
Nitab4.5_0011893g0010 Nicotiana tabacum HOM05D002446 ORTHO05D002941 1.5e-29 132.9 105 61.9
Aqoxy2G01739 Aquilegia oxysepala HOM05D002446 ORTHO05D002941 2.0e-29 132.5 105 61.9
Migut.D02281 Erythranthe guttata HOM05D002446 ORTHO05D002941 2.0e-29 132.5 107 63.6
Medtr2g095700 Medicago truncatula HOM05D002446 ORTHO05D002941 7.6e-29 130.6 106 55.7
CAN.G546.18 Capsicum annuum HOM05D002446 ORTHO05D002941 1.7e-28 129.4 105 58.1
Cc01_g10480 Coffea canephora HOM05D002446 ORTHO05D002941 1.7e-28 129.4 88 68.2
Hma1.2p1_0051F.1_g029290 Hydrangea macrophylla HOM05D002446 ORTHO05D002941 1.7e-28 129.4 85 71.8
Ca_01373_v3 Cicer arietinum L. HOM05D002446 ORTHO05D002941 2.2e-28 129.0 104 56.7
Psat5g281200 Pisum sativum HOM05D002446 ORTHO05D002941 2.2e-28 129.0 106 55.7
CsaV3_6G014260 Cucumis sativus L. HOM05D002446 ORTHO05D002941 3.8e-28 128.3 106 58.5
Manes.04G014700 Manihot esculenta HOM05D002446 ORTHO05D002941 8.4e-28 127.1 100 62.0
Eucgr.J00379 Eucalyptus grandis HOM05D002446 ORTHO05D002941 1.1e-27 126.7 93 63.4
PGSC0003DMG400019638 Solanum tuberosum HOM05D002446 ORTHO05D002941 1.4e-27 126.3 106 59.4
Peaxi162Scf00892g00124 Petunia axillaris HOM05D002446 ORTHO05D002941 1.9e-27 125.9 87 67.8
PSO339G6334 Papaver somniferum HOM05D002446 ORTHO05D002941 2.4e-27 125.6 105 58.1
SalBow3G4404 Salvia bowleyana HOM05D002446 ORTHO05D002941 2.4e-27 125.6 101 57.4
arahy.Tifrunner.gnm1.ann1.XALJ0Y Arachis hypogaea HOM05D002446 ORTHO05D002941 3.2e-27 125.2 106 57.5
Hund01470 Selenicereus undatus HOM05D002446 ORTHO05D002941 3.2e-27 125.2 96 58.3
ECA233G0707 Erigeron canadensis HOM05D002446 ORTHO05D002941 4.2e-27 124.8 102 57.8
ClCG02G021470 Citrullus lanatus HOM05D002446 ORTHO05D002941 5.5e-27 124.4 106 56.6
Sed0004628 Sechium edule HOM05D002446 ORTHO05D002941 7.1e-27 124.0 102 58.8
Sopen11g027720 Solanum pennellii HOM05D002446 ORTHO05D002941 7.1e-27 124.0 106 57.5
MELO3C026905.2 Cucumis melo HOM05D002446 ORTHO05D002941 9.3e-27 123.6 106 56.6
arahy.Tifrunner.gnm1.ann1.KSB81E Arachis hypogaea HOM05D002446 ORTHO05D002941 1.2e-26 123.2 107 55.1
arahy.Tifrunner.gnm1.ann1.0C4R8T Arachis hypogaea HOM05D002446 ORTHO05D016628 1.6e-26 122.9 106 55.7
PGR119G2270 Punica granatum HOM05D002446 ORTHO05D002941 1.6e-26 122.9 106 52.8
Solyc11g069010.2 Solanum lycopersicum HOM05D002446 ORTHO05D002941 1.6e-26 122.9 106 57.5
Lsat_1_v5_gn_6_44060 Lactuca sativa HOM05D002446 ORTHO05D002941 2.7e-26 122.1 107 52.3
HanXRQChr10g0313301 Helianthus annuus HOM05D002446 ORTHO05D002941 3.5e-26 121.7 103 58.3
Sc21g0007230 Simmondsia chinensis HOM05D002446 ORTHO05D002941 1.3e-25 119.8 104 54.8
arahy.Tifrunner.gnm1.ann1.JQQ4L1 Arachis hypogaea HOM05D002446 ORTHO05D001054 1.8e-25 119.4 107 55.1
DCAR_018779 Daucus carota HOM05D002446 ORTHO05D002941 1.8e-25 119.4 86 66.3
Thecc.09G349200 Theobroma cacao HOM05D002446 ORTHO05D002941 8.7e-25 117.1 83 69.9
AUR62029202 Chenopodium quinoa HOM05D002446 ORTHO05D002941 1.1e-24 116.7 98 52.0
MBI19_g35849_MAGBIO Magnolia biondii HOM05D002446 ORTHO05D002941 1.5e-24 116.3 95 62.1
AUR62014939 Chenopodium quinoa HOM05D002446 ORTHO05D002941 1.9e-24 115.9 82 57.3
CANSAT80G1879 Cannabis sativa HOM05D002446 ORTHO05D002941 7.4e-24 114.0 102 57.8
Ah.01g003200 Amaranthus hybridus HOM05D002446 ORTHO05D002941 2.1e-23 112.5 96 49.0
CANSAT80G1262 Cannabis sativa HOM05D002446 ORTHO05D002941 2.1e-23 112.5 102 56.9
CANSAT80G1316 Cannabis sativa HOM05D002446 ORTHO05D002941 2.1e-23 112.5 102 56.9
GSVIVG01031495001 Vitis vinifera HOM05D002446 ORTHO05D002941 1.1e-22 110.2 68 69.1
Manes.11G151202 Manihot esculenta HOM05D002446 ORTHO05D002941 9.0e-22 107.1 114 50.0
Carub.0004s0887 Capsella rubella HOM05D002446 ORTHO05D002941 2.6e-21 105.5 77 61.0
EL10Ac9g22590 Beta vulgaris HOM05D002446 ORTHO05D002941 5.8e-21 104.4 80 52.5
Thhalv10016468m.g Eutrema salsugineum HOM05D002446 ORTHO05D002941 5.8e-21 104.4 98 52.0
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 1.7e-20 102.8 77 59.7
BraA04t17699Z Brassica rapa HOM05D002446 ORTHO05D002941 1.7e-20 102.8 74 60.8
SGA_v2.0_scaffold263G45966 Striga asiatica HOM05D002446 ORTHO05D002941 1.7e-20 102.8 94 56.4
THA.LOC104826383 Tarenaya hassleriana HOM05D002446 ORTHO05D002941 2.2e-20 102.4 109 50.5
CARHR120860 Cardamine hirsuta HOM05D002446 ORTHO05D002941 4.9e-20 101.3 77 59.7
A04p21330 Brassica napus HOM05D002446 ORTHO05D002941 8.4e-20 100.5 74 58.1
BcaC02g08208 Brassica carinata HOM05D002446 ORTHO05D002941 1.4e-19 99.8 74 59.5
C04p57250 Brassica napus HOM05D002446 ORTHO05D002941 1.4e-19 99.8 93 52.7
BolC4t27251H Brassica oleracea HOM05D002446 ORTHO05D002941 1.4e-19 99.8 74 59.5
unitig_0.g1500 Utricularia gibba HOM05D002446 ORTHO05D002941 4.2e-19 98.2 92 55.4
AL4G22060 Arabidopsis lyrata HOM05D002446 ORTHO05D002941 5.5e-19 97.8 77 58.4
Sp4g10900 Schrenkiella parvula HOM05D002446 ORTHO05D002941 9.3e-19 97.1 74 58.1
AT2G28100 Arabidopsis thaliana HOM05D002446 ORTHO05D002941 6.0e-18 94.4 75 60.0
ATR0680G222 Amborella trichopoda HOM05D002446 ORTHO05D002941 2.3e-17 92.4 71 57.7
ATR0680G143 Amborella trichopoda HOM05D002446 ORTHO05D002941 6.7e-17 90.9 71 56.3
BcaB06g28187 Brassica carinata HOM05D002446 ORTHO05D002941 1.1e-16 90.1 74 55.4
Zm00001eb074120 Zea mays HOM05D002446 ORTHO05D002941 2.5e-16 89.0 92 44.6
Os04g0560400 Oryza sativa ssp. japonica HOM05D002446 ORTHO05D002941 7.4e-16 87.4 101 42.6
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 2.8e-15 85.5 62 64.5
SEGI_04257 Sequoiadendron giganteum HOM05D002446 ORTHO05D002941 2.8e-15 85.5 75 52.0
Medtr2g095720 Medicago truncatula HOM05D002446 ORTHO05D002941 3.4e-13 78.6 62 53.2
arahy.Tifrunner.gnm1.ann1.SCS43X Arachis hypogaea HOM05D007495 ORTHO05D009552 7.6e-13 77.4 76 53.9
Pp3c3_30260 Physcomitrium patens HOM05D002446 ORTHO05D002941 8.5e-12 73.9 85 38.8
SMO111G0097 Selaginella moellendorffii HOM05D002446 ORTHO05D016654 9.4e-11 70.5 78 39.7
SMO215G0005 Selaginella moellendorffii HOM05D002446 ORTHO05D016654 9.4e-11 70.5 77 39.0
SMO200G0089 Selaginella moellendorffii HOM05D002446 ORTHO05D002941 1.6e-10 69.7 77 40.3
SMO338G0027 Selaginella moellendorffii HOM05D002446 ORTHO05D002941 1.6e-10 69.7 77 40.3
CDE10G0925 Ceratophyllum demersum HOM05D002446 ORTHO05D002941 6.1e-10 67.8 78 44.9
SMO121G0003 Selaginella moellendorffii HOM05D002446 ORTHO05D002941 7.9e-10 67.4 77 36.4
SMO121G0009 Selaginella moellendorffii HOM05D002446 ORTHO05D016654 7.9e-10 67.4 77 39.0
SMO121G0001 Selaginella moellendorffii HOM05D002446 ORTHO05D016654 1.4e-09 66.6 77 36.4
SMO140G0106 Selaginella moellendorffii HOM05D002446 ORTHO05D002941 1.8e-09 66.2 77 36.4
AagrBONN_evm.TU.Sc2ySwM_117.290 Anthoceros agrestis HOM05D002446 ORTHO05D002941 3.9e-09 65.1 75 38.7
SMO083G0006 Selaginella moellendorffii HOM05D002446 ORTHO05D002941 1.1e-08 63.5 77 37.7
Duzib205G1881 Durio zibethinus HOM05D002446 ORTHO05D002941 2.2e-07 59.3 74 40.5
Gohir.A12G263200 Gossypium hirsutum HOM05D002446 ORTHO05D002941 3.7e-07 58.5 73 39.7
Duzib084G0992 Durio zibethinus HOM05D002446 ORTHO05D002941 6.3e-07 57.8 72 38.9
SMO140G0094 Selaginella moellendorffii HOM05D002446 ORTHO05D002941 6.3e-07 57.8 77 33.8
Gorai.008G282700 Gossypium raimondii HOM05D002446 ORTHO05D002941 8.2e-07 57.4 73 39.7
Nitab4.5_0006353g0010 Nicotiana tabacum HOM05D002446 ORTHO05D002941 8.2e-07 57.4 76 42.1
SMO140G0113 Selaginella moellendorffii HOM05D002446 ORTHO05D016654 1.1e-06 57.0 77 32.5
SMO282G0001 Selaginella moellendorffii HOM05D002446 ORTHO05D002941 1.1e-06 57.0 81 33.3
TAR375G0746 Trochodendron aralioides HOM05D002446 ORTHO05D002941 1.4e-06 56.6 73 43.8
COL.COLO4_14206 Corchorus olitorius HOM05D002446 ORTHO05D002941 1.8e-06 56.2 72 38.9
Nitab4.5_0000072g0120 Nicotiana tabacum HOM05D002446 ORTHO05D002941 1.8e-06 56.2 76 42.1
Gohir.D12G263700 Gossypium hirsutum HOM05D002446 ORTHO05D002941 3.1e-06 55.5 73 38.4
Thecc.03G164400 Theobroma cacao HOM05D002446 ORTHO05D002941 3.1e-06 55.5 72 37.5
Cpa.g.sc3.250 Carica papaya HOM05D002446 ORTHO05D002941 5.3e-06 54.7 77 39.0
Lalb_Chr21g0304871 Lupinus albus HOM05D002446 ORTHO05D002941 5.3e-06 54.7 74 45.9
PSO478G0710 Papaver somniferum HOM05D002446 ORTHO05D002941 5.3e-06 54.7 76 40.8
CBR_g16068 Chara braunii HOM05D002446 ORTHO05D002941 9.1e-06 53.9 83 33.7
PSO782G1007 Papaver somniferum HOM05D002446 ORTHO05D002941 9.1e-06 53.9 74 39.2


User provided reference genes

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