Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 6.4e-64 247.3 128 100.0
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.5e-57 226.1 127 89.0
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.0e-57 225.7 128 88.3
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.6e-57 225.3 128 87.5
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 3.4e-57 224.9 128 89.1
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 4.5e-57 224.6 128 86.7
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.8e-57 224.2 128 88.3
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 5.8e-57 224.2 128 88.3
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.0e-56 223.4 128 87.5
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 1.3e-56 223.0 126 86.5
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.3e-56 223.0 126 90.5
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 2.2e-56 222.2 126 86.5
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.9e-56 221.1 129 86.8
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.1e-55 219.9 127 85.8
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.4e-55 219.5 125 88.8
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.4e-55 219.5 128 88.3
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 2.5e-55 218.8 126 84.9
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.5e-55 218.8 126 88.9
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 3.2e-55 218.4 127 84.3
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 4.2e-55 218.0 120 90.0
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 4.2e-55 218.0 128 87.5
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 5.5e-55 217.6 127 85.0
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 7.1e-55 217.2 127 85.0
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.2e-54 216.5 128 82.8
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.6e-54 216.1 130 84.6
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.7e-54 215.3 126 85.7
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.7e-54 215.3 127 83.5
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 3.5e-54 214.9 122 86.9
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 6.0e-54 214.2 126 84.1
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.3e-53 213.0 122 86.1
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.3e-53 213.0 125 84.0
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.3e-53 213.0 127 82.7
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.8e-53 212.6 118 88.1
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.8e-53 212.6 125 84.0
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.8e-53 212.6 127 83.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.3e-53 212.2 127 81.9
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 3.0e-53 211.8 127 82.7
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 3.0e-53 211.8 121 86.8
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 5.1e-53 211.1 126 85.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 8.7e-53 210.3 120 84.2
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.5e-52 209.5 125 84.8
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.5e-52 209.5 122 85.2
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.9e-52 209.1 128 82.0
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.9e-52 209.1 123 85.4
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.5e-52 208.8 127 81.9
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 4.3e-52 208.0 124 83.1
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.3e-52 208.0 126 81.7
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 7.4e-52 207.2 125 82.4
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.3e-51 206.5 124 81.5
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.6e-51 206.1 128 80.5
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.1e-51 205.7 127 80.3
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 3.7e-51 204.9 123 80.5
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 6.2e-51 204.1 122 82.8
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 6.2e-51 204.1 124 79.8
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.1e-50 203.4 124 79.0
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.1e-50 203.4 127 78.0
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.4e-50 203.0 119 81.5
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.4e-50 203.0 123 82.9
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.8e-50 202.6 119 82.4
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.8e-50 202.6 119 82.4
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.8e-50 202.6 119 82.4
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.8e-50 202.6 115 87.0
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.8e-50 202.6 123 81.3
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 2.4e-50 202.2 119 82.4
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 2.4e-50 202.2 119 82.4
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.4e-50 202.2 118 84.7
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 5.3e-50 201.1 119 81.5
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 6.9e-50 200.7 128 80.5
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 9.0e-50 200.3 120 80.0
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 9.0e-50 200.3 122 82.0
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.0e-49 199.1 122 81.1
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 3.4e-49 198.4 123 81.3
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 5.8e-49 197.6 123 80.5
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 7.6e-49 197.2 116 81.9
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 7.6e-49 197.2 123 79.7
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.6e-49 197.2 127 79.5
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.0e-48 196.8 105 95.2
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.0e-48 196.8 116 81.0
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.3e-48 196.4 127 78.7
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-48 196.1 123 79.7
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.7e-48 196.1 114 83.3
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.2e-48 195.7 120 80.8
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.9e-48 195.3 124 79.8
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.8e-48 194.9 128 78.1
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 5.0e-48 194.5 123 77.2
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 5.0e-48 194.5 117 82.1
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.4e-47 193.0 124 79.8
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.9e-47 192.6 117 77.8
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.9e-47 192.6 117 77.8
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 2.5e-47 192.2 123 75.6
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 4.2e-47 191.4 126 76.2
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.1e-47 190.7 122 77.0
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 9.3e-47 190.3 108 89.8
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.2e-46 189.9 117 79.5
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.1e-46 189.1 123 76.4
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 2.1e-46 189.1 123 74.8
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.1e-46 189.1 117 76.9
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 3.5e-46 188.3 117 76.1
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 7.9e-46 187.2 110 82.7
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.3e-45 186.4 123 74.0
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 7.4e-44 180.6 104 85.6
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 9.7e-44 180.3 127 74.0
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 6.3e-43 177.6 123 69.9
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.8e-42 176.0 120 73.3
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 6.9e-42 174.1 118 73.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.2e-41 173.3 119 75.6
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.0e-41 172.6 99 88.9
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 2.0e-41 172.6 98 88.8
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 3.4e-41 171.8 98 86.7
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 4.5e-41 171.4 120 73.3
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.0e-40 170.2 98 85.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.2e-40 169.1 90 92.2
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 2.9e-40 168.7 120 72.5
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 6.5e-40 167.5 122 70.5
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 9.4e-39 163.7 102 77.5
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.0e-37 160.2 124 66.9
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.4e-37 159.8 118 69.5
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 5.1e-37 157.9 98 79.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 5.1e-37 157.9 98 79.6
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 6.7e-37 157.5 95 81.1
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.5e-36 156.4 129 64.3
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.5e-36 155.6 120 68.3
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.3e-36 155.2 112 69.6
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.7e-36 154.5 86 90.7
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 2.2e-35 152.5 118 66.9
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.7e-35 151.8 123 63.4
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.1e-34 150.2 106 70.8
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 2.4e-34 149.1 87 81.6
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 7.7e-33 144.1 99 71.7
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.0e-32 143.7 83 81.9
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.7e-32 142.9 126 61.9
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 2.2e-32 142.5 121 56.2
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.5e-32 141.0 86 79.1
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.7e-30 135.6 102 69.6
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 4.7e-30 134.8 110 63.6
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 1.8e-29 132.9 113 58.4
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 1.1e-28 130.2 123 56.1
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 2.0e-28 129.4 88 67.0
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 4.4e-28 128.3 118 55.1
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 2.8e-27 125.6 121 48.8
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 3.7e-27 125.2 127 55.9
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.7e-27 125.2 85 75.3
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 4.8e-27 124.8 114 53.5
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 1.4e-26 123.2 117 56.4
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 3.1e-26 122.1 114 51.8
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 3.1e-26 122.1 116 56.9
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 9.1e-26 120.6 114 52.6
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.5e-25 118.2 118 52.5
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.3e-24 116.7 109 54.1
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 3.2e-23 112.1 63 82.5
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 4.2e-23 111.7 130 49.2
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 9.4e-23 110.5 129 48.1
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.1e-22 109.4 76 77.6
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 3.3e-20 102.1 61 80.3
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.4e-10 70.1 60 48.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 7.0e-10 67.8 66 53.0
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 5.9e-09 64.7 75 48.0
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 4.7e-06 55.1 111 33.3


User provided reference genes

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