Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 7.2e-238 827.0 466 100.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.1e-206 723.4 466 88.4
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 5.5e-206 721.1 466 88.0
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 2.3e-196 689.1 462 86.1
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 2.3e-196 689.1 462 85.7
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 2.8e-194 682.2 462 85.3
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 2.8e-194 682.2 459 83.4
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 4.9e-194 681.4 459 85.0
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 2.4e-193 679.1 468 84.0
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 3.2e-193 678.7 459 85.0
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.2e-193 678.7 462 85.1
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 4.1e-193 678.3 462 85.1
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 7.0e-193 677.6 459 85.2
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 5.9e-192 674.5 459 84.3
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 7.8e-192 674.1 461 83.7
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.0e-191 673.7 463 82.9
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.5e-190 669.1 461 83.3
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 2.1e-189 666.0 462 83.5
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 6.1e-189 664.5 462 81.8
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 1.4e-188 663.3 462 83.8
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 1.4e-188 663.3 462 84.0
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.7e-186 656.4 460 81.3
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 4.9e-186 654.8 461 80.9
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 4.9e-186 654.8 459 81.0
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 4.9e-186 654.8 459 80.0
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 6.4e-186 654.4 462 82.3
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 8.3e-186 654.1 461 82.9
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.9e-185 652.9 463 82.5
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.9e-185 652.9 460 80.9
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 2.4e-185 652.5 459 80.6
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 5.4e-185 651.4 461 83.1
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 7.0e-185 651.0 462 81.2
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 7.0e-185 651.0 461 82.4
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.2e-184 650.2 461 82.4
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 2.7e-184 649.0 461 82.2
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 3.5e-184 648.7 493 77.3
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 6.0e-184 647.9 462 81.8
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 2.3e-183 646.0 466 79.6
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.9e-182 642.9 461 80.5
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.5e-182 642.5 464 75.0
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 3.3e-182 642.1 461 80.5
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 4.3e-182 641.7 465 81.1
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 4.7e-181 638.3 460 80.9
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 4.0e-180 635.2 460 80.9
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 5.2e-180 634.8 462 79.9
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 6.8e-180 634.4 441 84.4
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.5e-179 633.3 458 79.5
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 2.6e-179 632.5 462 80.1
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 2.6e-179 632.5 460 79.6
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 3.4e-179 632.1 507 69.8
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 3.4e-179 632.1 461 79.6
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.5e-179 630.9 464 80.4
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.5e-179 630.9 464 80.4
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 4.9e-178 628.2 462 78.8
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.1e-177 627.1 460 80.2
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.4e-177 626.7 462 79.4
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.4e-177 626.7 459 79.7
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 1.9e-177 626.3 455 80.0
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 1.9e-177 626.3 459 79.7
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 1.9e-177 626.3 461 80.0
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 3.2e-177 625.5 463 79.0
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 7.1e-177 624.4 460 79.8
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 7.1e-177 624.4 459 79.1
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 9.2e-177 624.0 460 80.0
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.2e-176 623.6 461 76.8
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.6e-176 623.2 460 72.4
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.6e-176 623.2 460 72.4
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 3.5e-176 622.1 462 79.7
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.1e-174 617.1 462 77.3
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.5e-174 616.7 484 74.2
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 7.3e-174 614.4 461 79.2
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 9.5e-174 614.0 462 77.5
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.2e-173 613.6 462 78.1
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-173 613.2 462 76.8
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-173 613.2 462 76.6
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.1e-172 610.5 475 75.6
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.6e-171 605.9 461 76.1
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 2.4e-169 599.4 459 76.5
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.2e-168 597.0 459 74.5
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.2e-165 587.0 462 76.0
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.1e-165 586.3 462 76.2
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 2.8e-165 585.9 465 68.6
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.6e-163 579.3 462 74.2
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.8e-162 575.5 462 73.8
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.9e-161 573.2 462 74.2
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.4e-161 571.6 462 74.0
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.2e-160 570.5 551 65.7
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.0e-159 567.4 462 72.7
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.3e-159 567.0 456 73.7
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 1.7e-159 566.6 456 73.5
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 3.0e-159 565.8 456 73.5
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 3.9e-159 565.5 467 67.5
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 5.1e-159 565.1 456 73.2
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.9e-158 563.1 461 72.5
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 8.1e-157 557.8 466 71.7
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 1.5e-155 553.5 462 71.6
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 2.2e-154 549.7 387 72.9
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 3.8e-154 548.9 468 63.5
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 2.4e-153 546.2 389 73.0
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 2.4e-153 546.2 387 72.4
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.3e-151 539.7 460 69.3
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 6.6e-151 538.1 459 70.6
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 8.7e-151 537.7 389 72.2
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.6e-149 533.5 401 80.0
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 4.0e-148 528.9 461 64.9
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.5e-147 526.9 495 67.1
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 6.4e-146 521.5 461 68.8
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 1.9e-145 520.0 389 70.4
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 9.0e-140 501.1 387 77.5
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 3.8e-138 495.7 461 68.8
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 1.6e-136 490.3 461 64.6
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.3e-135 487.3 464 65.7
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 5.5e-121 438.7 464 59.3
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 7.4e-118 428.3 366 64.5
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.5e-115 419.1 467 54.8
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 4.7e-112 409.1 322 71.1
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 8.5e-106 388.3 301 69.4
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 4.7e-104 382.5 462 51.3
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 2.6e-78 297.0 292 67.5
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 3.2e-68 263.5 390 40.8
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.5e-65 254.6 397 41.1
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.6e-58 229.2 242 53.3
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 9.5e-57 225.3 189 68.8
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 1.1e-52 211.8 507 39.3
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.7e-50 204.5 399 32.8
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.1e-47 195.3 150 70.7
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.4e-47 194.1 162 66.0
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.4e-44 184.1 123 75.6
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 2.0e-38 164.5 136 66.9
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 4.4e-38 163.3 503 34.4
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 3.8e-37 160.2 124 71.8
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.6e-34 149.4 156 57.7
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 7.4e-25 119.4 222 39.6
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 2.6e-22 110.9 94 67.0
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 1.0e-21 109.0 68 85.3
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 2.7e-19 100.9 100 86.0
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.0e-18 99.0 55 94.5
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 2.8e-16 90.9 75 69.3
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 7.2e-12 76.3 50 88.0
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 3.6e-11 73.9 111 46.8
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.0e-10 72.4 97 49.5
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.3e-10 72.0 59 66.1
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 3.9e-10 70.5 60 60.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 9.7e-09 65.9 113 42.5
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 2.2e-08 64.7 66 54.5
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 2.8e-08 64.3 65 53.8
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 6.3e-08 63.2 71 47.9
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 8.2e-08 62.8 113 44.2
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 8.2e-08 62.8 267 24.7
SMO356G0330 Selaginella moellendorffii HOM05D004145 ORTHO05D004879 4.5e-06 57.0 268 22.8
FAN20G3151 Fragaria x ananassa HOM05D004145 ORTHO05D004879 5.9e-06 56.6 247 24.3


User provided reference genes

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