Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29317 Davidia involucrata HOM05D004906 ORTHO05D005926 1.3e-260 902.5 437 100.0
CSS0023910 Camellia sinensis var. sinensis HOM05D004906 ORTHO05D005926 8.3e-188 660.6 419 74.7
TAR623G1747 Trochodendron aralioides HOM05D004906 ORTHO05D005926 1.4e-187 659.8 420 74.8
Hma1.2p1_0811F.1_g222140 Hydrangea macrophylla HOM05D004906 ORTHO05D005926 1.7e-185 652.9 420 73.8
QL01p016300 Quercus lobata HOM05D004906 ORTHO05D005926 2.8e-183 645.6 418 73.9
Rhsim13G0204200 Rhododendron simsii HOM05D004906 ORTHO05D005926 7.1e-179 630.9 420 68.1
Actinidia06985 Actinidia chinensis HOM05D004906 ORTHO05D005926 1.7e-177 626.3 420 71.4
GSVIVG01000077001 Vitis vinifera HOM05D004906 ORTHO05D005926 4.3e-176 621.7 423 69.7
Cfa009918 Carpinus fangiana HOM05D004906 ORTHO05D005926 2.8e-175 619.0 417 71.7
Lj4A832T45 Lonicera japonica HOM05D004906 ORTHO05D005926 2.1e-170 602.8 432 69.0
Lj6A106G22 Lonicera japonica HOM05D004906 ORTHO05D005926 5.6e-168 594.7 433 67.0
Cpa.g.sc34.192 Carica papaya HOM05D004906 ORTHO05D005926 6.2e-167 591.3 418 67.0
Prupe.1G051200 Prunus persica HOM05D004906 ORTHO05D005926 3.4e-165 585.5 420 66.4
TWI31G0720 Tripterygium wilfordii HOM05D004906 ORTHO05D005926 5.8e-165 584.7 418 66.5
PGSC0003DMG400032507 Solanum tuberosum HOM05D004906 ORTHO05D005926 2.2e-164 582.8 420 64.8
Peaxi162Scf00029g02411 Petunia axillaris HOM05D004906 ORTHO05D005926 2.9e-164 582.4 420 65.0
Solyc11g062360.2 Solanum lycopersicum HOM05D004906 ORTHO05D005926 1.4e-163 580.1 420 64.5
TWI79G0625 Tripterygium wilfordii HOM05D004906 ORTHO05D005926 5.4e-163 578.2 420 66.4
Atru.chr12.1308 Acer truncatum HOM05D004906 ORTHO05D005926 7.1e-163 577.8 421 65.8
Ciclev10014615m.g Citrus clementina HOM05D004906 ORTHO05D005926 1.7e-161 573.2 421 64.6
Sopen11g024360 Solanum pennellii HOM05D004906 ORTHO05D005926 3.0e-161 572.4 420 64.0
Aqoxy1G00419 Aquilegia oxysepala HOM05D004906 ORTHO05D005926 5.1e-161 571.6 420 66.2
Sabra09G0049800 Salix brachista HOM05D004906 ORTHO05D005926 9.6e-160 567.4 420 66.2
Nitab4.5_0000492g0170 Nicotiana tabacum HOM05D004906 ORTHO05D005926 1.3e-159 567.0 420 63.1
FvH4_7g06910 Fragaria vesca HOM05D004906 ORTHO05D005926 2.4e-158 562.8 435 61.8
Thecc.09G253700 Theobroma cacao HOM05D004906 ORTHO05D005926 3.1e-158 562.4 420 63.6
Potri.009G066900 Populus trichocarpa HOM05D004906 ORTHO05D005926 6.9e-158 561.2 420 65.0
Oeu025917.1 Olea europaea HOM05D004906 ORTHO05D005926 9.0e-158 560.8 420 63.3
Lj3g0015121 Lotus japonicus HOM05D004906 ORTHO05D005926 2.6e-157 559.3 420 63.8
Manes.14G139200 Manihot esculenta HOM05D004906 ORTHO05D005926 4.5e-157 558.5 421 63.9
CiPaw.13G147500 Carya illinoinensis HOM05D004906 ORTHO05D005926 5.8e-157 558.1 418 65.6
Nn5g28862 Nelumbo nucifera HOM05D004906 ORTHO05D005926 5.8e-157 558.1 400 66.0
Haze_23276 Corylus avellana HOM05D004906 ORTHO05D005926 1.7e-156 556.6 420 64.8
Ca_23430_v3 Cicer arietinum L. HOM05D004906 ORTHO05D005926 2.2e-156 556.2 420 64.5
Medtr8g023050 Medicago truncatula HOM05D004906 ORTHO05D005926 2.2e-156 556.2 420 64.8
Nitab4.5_0002026g0120 Nicotiana tabacum HOM05D004906 ORTHO05D005926 3.8e-156 555.4 421 62.5
SGA_v2.0_scaffold3G01435 Striga asiatica HOM05D004906 ORTHO05D005926 3.8e-156 555.4 420 63.6
MD10G1340300 Malus domestica HOM05D004906 ORTHO05D005926 4.9e-156 555.1 417 65.2
Sabra16G0167700 Salix brachista HOM05D004906 ORTHO05D005926 1.1e-155 553.9 421 64.1
CANSAT54G2831 Cannabis sativa HOM05D004906 ORTHO05D005926 1.4e-155 553.5 420 64.0
RcHm_v2.0_Chr7g0223431 Rosa chinensis HOM05D004906 ORTHO05D005926 1.9e-155 553.1 420 62.4
FAN06G2810 Fragaria x ananassa HOM05D004906 ORTHO05D005926 7.1e-155 551.2 421 62.2
Psat4g165720 Pisum sativum HOM05D004906 ORTHO05D005926 1.2e-154 550.4 420 63.3
RcHm_v2.0_Chr1g0336841 Rosa chinensis HOM05D004906 ORTHO05D005926 1.2e-154 550.4 421 62.5
Potri.001G272400 Populus trichocarpa HOM05D004906 ORTHO05D005926 3.5e-154 548.9 420 63.8
Phvul.010G072800 Phaseolus vulgaris HOM05D004906 ORTHO05D005926 1.0e-153 547.4 434 61.1
MD13G1224500 Malus domestica HOM05D004906 ORTHO05D005926 3.0e-153 545.8 409 66.3
TPR.G18167 Trifolium pratense HOM05D004906 ORTHO05D005926 3.0e-153 545.8 420 63.1
MSTRG.12434 Avicennia marina HOM05D004906 ORTHO05D005926 6.7e-153 544.7 420 61.2
Eucgr.J00670 Eucalyptus grandis HOM05D004906 ORTHO05D005926 1.5e-152 543.5 420 61.7
FvH4_5g29830 Fragaria vesca HOM05D004906 ORTHO05D005926 1.9e-152 543.1 422 60.7
arahy.Tifrunner.gnm1.ann1.U80ME1 Arachis hypogaea HOM05D004906 ORTHO05D005926 5.6e-152 541.6 420 61.4
COL.COLO4_06626 Corchorus olitorius HOM05D004906 ORTHO05D005926 1.3e-151 540.4 420 61.9
FAN08G1833 Fragaria x ananassa HOM05D004906 ORTHO05D005926 1.3e-151 540.4 422 60.7
Lalb_Chr17g0343281 Lupinus albus HOM05D004906 ORTHO05D005926 1.3e-151 540.4 420 62.4
Cc01_g06610 Coffea canephora HOM05D004906 ORTHO05D005926 2.1e-151 539.7 420 60.7
FAN18G3162 Fragaria x ananassa HOM05D004906 ORTHO05D005926 3.7e-151 538.9 425 59.8
CsaV3_6G038760 Cucumis sativus L. HOM05D004906 ORTHO05D005926 4.8e-151 538.5 416 62.0
FAN13G0138 Fragaria x ananassa HOM05D004906 ORTHO05D005926 4.8e-151 538.5 422 60.7
Glyma.07G045400 Glycine max HOM05D004906 ORTHO05D005926 4.8e-151 538.5 420 62.4
MD13G1224600 Malus domestica HOM05D004906 ORTHO05D005926 8.1e-151 537.7 420 63.8
DCAR_031616 Daucus carota HOM05D004906 ORTHO05D005926 1.8e-150 536.6 420 60.7
SalBow6G0163 Salvia bowleyana HOM05D004906 ORTHO05D005926 1.8e-150 536.6 419 61.3
arahy.Tifrunner.gnm1.ann1.4M7FUH Arachis hypogaea HOM05D004906 ORTHO05D005926 6.9e-150 534.6 420 61.0
Gorai.009G076700 Gossypium raimondii HOM05D004906 ORTHO05D005926 3.4e-149 532.3 420 60.0
Sc09g0001150 Simmondsia chinensis HOM05D004906 ORTHO05D005926 7.6e-149 531.2 422 61.8
ClCG02G022640 Citrullus lanatus HOM05D004906 ORTHO05D005926 1.7e-148 530.0 417 60.9
MELO3C014538.2 Cucumis melo HOM05D004906 ORTHO05D005926 3.8e-148 528.9 416 61.1
PSO566G0107 Papaver somniferum HOM05D004906 ORTHO05D005926 4.9e-148 528.5 421 62.7
Sed0008510 Sechium edule HOM05D004906 ORTHO05D005926 2.5e-147 526.2 416 60.8
PSO782G1935 Papaver somniferum HOM05D004906 ORTHO05D005926 4.6e-146 521.9 421 62.2
HanXRQChr03g0091561 Helianthus annuus HOM05D004906 ORTHO05D005926 6.0e-146 521.5 423 59.1
ECA240G2886 Erigeron canadensis HOM05D004906 ORTHO05D005926 1.3e-145 520.4 422 58.5
VMungo0540G0727 Vigna mungo HOM05D004906 ORTHO05D005926 1.9e-144 516.5 414 60.9
Hund07413 Selenicereus undatus HOM05D004906 ORTHO05D005926 2.4e-142 509.6 422 59.5
EL10Ac4g10081 Beta vulgaris HOM05D004906 ORTHO05D005926 5.3e-142 508.4 423 58.4
ECA240G3817 Erigeron canadensis HOM05D004906 ORTHO05D005926 2.6e-141 506.1 422 58.1
Ah.06g194850 Amaranthus hybridus HOM05D004906 ORTHO05D005926 7.6e-141 504.6 422 57.6
THA.LOC104811206 Tarenaya hassleriana HOM05D004906 ORTHO05D005926 1.3e-140 503.8 420 58.1
AUR62006570 Chenopodium quinoa HOM05D004906 ORTHO05D005926 4.9e-140 501.9 422 58.1
AUR62000224 Chenopodium quinoa HOM05D004906 ORTHO05D005926 1.1e-139 500.7 422 58.1
PGR102G2398 Punica granatum HOM05D004906 ORTHO05D005926 1.4e-139 500.4 420 57.1
AT5G12260 Arabidopsis thaliana HOM05D004906 ORTHO05D005926 9.7e-136 487.6 420 55.0
MBI13_g07374_MAGBIO Magnolia biondii HOM05D004906 ORTHO05D005926 1.6e-135 486.9 370 63.8
A10p25530 Brassica napus HOM05D004906 ORTHO05D005926 2.2e-135 486.5 419 54.4
CDE08G1453 Ceratophyllum demersum HOM05D004906 ORTHO05D005926 2.8e-135 486.1 414 56.3
Gohir.A05G072500 Gossypium hirsutum HOM05D004906 ORTHO05D005926 2.8e-135 486.1 420 56.2
unitig_699.g19150 Utricularia gibba HOM05D004906 ORTHO05D005926 3.7e-135 485.7 418 55.7
BolC9t59294H Brassica oleracea HOM05D004906 ORTHO05D005926 6.3e-135 485.0 419 54.7
BraA10t44617Z Brassica rapa HOM05D004906 ORTHO05D005926 6.3e-135 485.0 419 54.4
AL6G23070 Arabidopsis lyrata HOM05D004906 ORTHO05D005926 1.8e-134 483.4 420 54.3
Gohir.D05G075300 Gossypium hirsutum HOM05D004906 ORTHO05D005926 2.4e-134 483.0 420 56.0
C09p64610 Brassica napus HOM05D004906 ORTHO05D005926 5.3e-134 481.9 419 54.4
Sp6g31380 Schrenkiella parvula HOM05D004906 ORTHO05D005926 4.5e-133 478.8 419 54.4
Thhalv10012969m.g Eutrema salsugineum HOM05D004906 ORTHO05D005926 2.2e-132 476.5 418 54.3
SGA_v2.0_scaffold26G11394 Striga asiatica HOM05D004906 ORTHO05D005926 2.2e-132 476.5 411 56.0
Aa31LG3G14960 Aethionema arabicum HOM05D004906 ORTHO05D005926 1.1e-131 474.2 420 53.8
Os01g0283000 Oryza sativa ssp. japonica HOM05D004906 ORTHO05D005926 1.9e-131 473.4 423 55.3
Sp6g31370 Schrenkiella parvula HOM05D004906 ORTHO05D005926 6.7e-129 464.9 420 53.3
Lsat_1_v5_gn_3_117120 Lactuca sativa HOM05D004906 ORTHO05D005926 3.3e-128 462.6 422 53.6
arahy.Tifrunner.gnm1.ann1.7BKA07 Arachis hypogaea HOM05D004906 ORTHO05D005926 9.7e-128 461.1 346 62.1
HPP92_025126 Vanilla planifolia HOM05D004906 ORTHO05D005926 9.7e-128 461.1 422 52.6
Zm00001eb129370 Zea mays HOM05D004906 ORTHO05D005926 1.7e-127 460.3 419 53.2
Thhalv10028084m.g Eutrema salsugineum HOM05D004906 ORTHO05D005926 4.8e-127 458.8 419 52.7
BcaNung06216 Brassica carinata HOM05D004906 ORTHO05D005926 1.5e-125 453.8 401 55.6
ATR0745G074 Amborella trichopoda HOM05D004906 ORTHO05D005926 2.0e-125 453.4 420 53.8
BraA03t09888Z Brassica rapa HOM05D004906 ORTHO05D005926 1.0e-124 451.1 418 51.9
A03p05500 Brassica napus HOM05D004906 ORTHO05D005926 1.3e-124 450.7 418 51.9
FAN03G0457 Fragaria x ananassa HOM05D004906 ORTHO05D005926 6.1e-122 441.8 411 54.0
SHI24959 Sapria himalayana HOM05D004906 ORTHO05D005926 7.9e-122 441.4 422 52.6
FAN10G0972 Fragaria x ananassa HOM05D004906 ORTHO05D005926 1.8e-118 430.3 414 51.7
Glyma.16G013300 Glycine max HOM05D004906 ORTHO05D005926 3.2e-115 419.5 366 58.5
Duzib150G1150 Durio zibethinus HOM05D004906 ORTHO05D005926 1.0e-113 414.5 420 50.0
Lj6C105G1 Lonicera japonica HOM05D004906 ORTHO05D005926 2.3e-113 413.3 432 51.4
BcaB01g05413 Brassica carinata HOM05D004906 ORTHO05D005926 1.8e-110 403.7 422 48.1
SEGI_13581 Sequoiadendron giganteum HOM05D004906 ORTHO05D005926 5.3e-110 402.1 428 47.7
CARHR200840 Cardamine hirsuta HOM05D004906 ORTHO05D005926 5.9e-109 398.7 365 53.2
Migut.N02384 Erythranthe guttata HOM05D004906 ORTHO05D005926 1.5e-107 394.0 328 58.5
Actinidia24474 Actinidia chinensis HOM05D004906 ORTHO05D005926 2.7e-98 363.2 400 51.2
Ciclev10017537m.g Citrus clementina HOM05D004906 ORTHO05D005926 5.8e-80 302.4 349 50.4
SMO358G0189 Selaginella moellendorffii HOM05D004906 ORTHO05D005926 3.2e-70 270.0 224 54.0
ATR0307G068 Amborella trichopoda HOM05D004906 ORTHO05D005926 1.2e-69 268.1 257 53.7
CiPaw.14G109800 Carya illinoinensis HOM05D004906 ORTHO05D005926 6.0e-69 265.8 136 87.5
BolC3t13148H Brassica oleracea HOM05D004906 ORTHO05D005926 2.3e-68 263.8 318 43.1
C03p06420 Brassica napus HOM05D004906 ORTHO05D005926 1.5e-67 261.2 363 40.5
BcaNung06730 Brassica carinata HOM05D004906 ORTHO05D005926 4.3e-67 259.6 154 76.0
Pp3c3_19100 Physcomitrium patens HOM05D004906 ORTHO05D005926 5.6e-67 259.2 444 35.1
Mapoly0001s0235 Marchantia polymorpha HOM05D004906 ORTHO05D005926 1.6e-66 257.7 427 34.7
FAN01G0016 Fragaria x ananassa HOM05D004906 ORTHO05D005926 2.6e-64 250.4 322 43.8
Carub.0006s1077 Capsella rubella HOM05D004906 ORTHO05D005926 7.8e-61 238.8 136 77.2
Potri.012G121826 Populus trichocarpa HOM05D004906 ORTHO05D005926 1.6e-50 204.5 191 56.0
Carub.0006s1078 Capsella rubella HOM05D004906 ORTHO05D005926 7.6e-48 195.7 236 41.5
Oeu061691.1 Olea europaea HOM05D004906 ORTHO05D005926 7.9e-45 185.7 130 66.9
Atru.chr3.2838 Acer truncatum HOM05D004906 ORTHO05D005926 1.9e-22 111.3 67 67.2
CBR_g22918 Chara braunii HOM05D004906 ORTHO05D005926 3.7e-18 97.1 139 33.1
CBR_g21026 Chara braunii HOM05D004906 ORTHO05D005926 1.2e-08 65.5 102 34.3
Rhsim13G0204400 Rhododendron simsii HOM05D004906 ORTHO05D005926 1.9e-06 58.2 70 40.0
SEGI_28974 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 3.2e-06 57.4 95 30.5
AL8G37290 Arabidopsis lyrata HOM05D003714 ORTHO05D004379 4.2e-06 57.0 132 26.5
AT5G60700 Arabidopsis thaliana HOM05D003714 ORTHO05D004379 4.2e-06 57.0 132 26.5
BcaC03g13945 Brassica carinata HOM05D003714 ORTHO05D004379 4.2e-06 57.0 132 26.5
C02p11520 Brassica napus HOM05D003714 ORTHO05D004379 4.2e-06 57.0 132 26.5
BolC2t07227H Brassica oleracea HOM05D003714 ORTHO05D004379 4.2e-06 57.0 132 26.5
BraA02t05710Z Brassica rapa HOM05D003714 ORTHO05D004379 4.2e-06 57.0 132 26.5
Carub.0008s2138 Capsella rubella HOM05D003714 ORTHO05D004379 4.2e-06 57.0 132 26.5
Rhsim01G0215800 Rhododendron simsii HOM05D003714 ORTHO05D004379 4.2e-06 57.0 148 26.4
Sc15g0001490 Simmondsia chinensis HOM05D003714 ORTHO05D004379 7.2e-06 56.2 148 26.4
BcaB05g22662 Brassica carinata HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 28.0
BcaB08g36372 Brassica carinata HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 28.0
BcaC04g19732 Brassica carinata HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 28.0
A10p17940 Brassica napus HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 28.0
C09p53430 Brassica napus HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 28.0
BolC9t58217H Brassica oleracea HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 28.0
BraA10t43869Z Brassica rapa HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 28.0
Thhalv10012601m.g Eutrema salsugineum HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 28.0
Lj3g0004216 Lotus japonicus HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 29.0
Sp6g22270 Schrenkiella parvula HOM05D003714 ORTHO05D004379 9.4e-06 55.8 93 28.0


User provided reference genes

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