Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 2.9e-146 521.9 271 100.0
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.1e-97 360.5 203 91.6
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 3.1e-92 342.4 203 85.7
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 5.3e-92 341.7 203 86.2
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.5e-91 338.6 203 84.7
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 4.7e-88 328.6 203 83.7
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.0e-87 327.4 203 84.2
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 4.4e-86 322.0 207 81.6
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 4.4e-86 322.0 207 81.6
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.7e-85 320.1 204 80.4
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 2.2e-85 319.7 203 79.8
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 5.3e-84 315.1 203 79.3
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.3e-84 315.1 214 74.8
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 9.1e-84 314.3 203 79.3
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.5e-83 313.5 210 76.2
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.0e-83 313.2 203 77.8
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 3.4e-83 312.4 218 74.3
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 3.4e-83 312.4 203 76.4
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 7.7e-83 311.2 203 76.4
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.0e-82 310.8 197 79.2
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.3e-82 310.5 203 79.8
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-82 310.5 203 77.3
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.3e-82 310.5 203 77.3
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 2.2e-82 309.7 197 79.2
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 2.9e-82 309.3 204 77.9
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 2.9e-82 309.3 204 77.9
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 2.9e-82 309.3 203 77.8
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.8e-82 308.9 197 81.2
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.8e-82 308.9 204 77.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 5.0e-82 308.5 203 77.3
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 8.5e-82 307.8 203 76.8
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.1e-81 307.4 205 78.0
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.1e-81 307.4 196 78.6
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.4e-81 307.0 203 78.3
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.4e-81 307.0 203 76.8
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.4e-81 307.0 203 76.8
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 7.2e-81 304.7 199 77.9
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 7.2e-81 304.7 197 77.2
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.2e-80 303.9 205 78.5
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.2e-80 303.9 205 78.5
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.2e-80 303.9 197 76.6
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.6e-80 303.5 207 74.9
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.1e-80 303.1 203 75.9
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 2.7e-80 302.8 201 77.1
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 4.7e-80 302.0 215 71.2
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 6.1e-80 301.6 203 74.9
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 8.0e-80 301.2 209 73.7
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.4e-79 300.4 203 72.9
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 6.7e-79 298.1 203 78.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.7e-79 298.1 207 72.9
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.1e-78 297.4 197 78.2
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.1e-78 297.4 203 73.9
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.5e-78 297.0 207 72.5
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.5e-78 297.0 207 72.5
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.0e-78 296.6 203 73.9
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 2.0e-78 296.6 203 75.9
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.6e-78 296.2 203 73.9
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 2.6e-78 296.2 207 72.0
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.3e-78 295.8 197 76.1
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 4.4e-78 295.4 190 79.5
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.3e-77 293.9 205 73.7
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 2.2e-77 293.1 197 76.1
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.8e-77 292.7 207 71.5
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 8.2e-77 291.2 198 74.7
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.1e-76 290.8 203 73.4
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.1e-76 290.8 197 76.1
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 2.4e-76 289.7 199 75.4
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 2.4e-76 289.7 193 80.3
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 3.1e-76 289.3 203 71.4
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 7.0e-76 288.1 197 72.6
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.1e-76 287.7 203 70.9
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.6e-75 287.0 203 71.4
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.6e-75 287.0 197 74.6
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.6e-75 287.0 200 75.0
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.0e-75 286.6 204 73.0
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.6e-75 286.2 198 74.2
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 5.9e-75 285.0 204 72.1
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.7e-74 283.5 197 72.6
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.2e-74 283.1 203 70.4
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 2.9e-74 282.7 203 70.9
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 2.9e-74 282.7 203 71.4
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 3.8e-74 282.3 248 61.7
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.5e-73 280.4 201 72.6
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.9e-73 280.0 203 70.4
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.9e-73 280.0 203 69.0
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.5e-73 279.6 203 70.0
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 4.2e-73 278.9 203 70.4
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 4.2e-73 278.9 203 70.4
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 9.4e-73 277.7 203 68.5
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-72 277.3 205 70.2
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.7e-72 275.4 211 68.7
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.4e-71 273.9 199 72.4
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 3.0e-71 272.7 203 71.4
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 5.2e-71 271.9 203 69.5
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 6.7e-71 271.6 203 68.5
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 8.8e-71 271.2 251 61.4
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 8.8e-71 271.2 237 63.7
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.2e-70 270.8 197 70.1
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.3e-70 269.2 203 66.5
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 5.7e-70 268.5 229 61.6
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 2.2e-69 266.5 197 70.1
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 2.2e-69 266.5 197 69.5
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 2.8e-69 266.2 197 71.1
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.1e-68 264.2 197 68.5
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 7.0e-68 261.5 201 64.2
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 2.7e-67 259.6 175 76.0
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.0e-66 257.7 209 64.1
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 2.9e-66 256.1 196 63.8
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 3.8e-66 255.8 203 64.0
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 3.8e-66 255.8 203 64.0
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.5e-66 255.0 203 67.0
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 6.5e-66 255.0 203 67.0
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.1e-65 254.2 203 66.5
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.9e-65 253.4 216 64.8
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 5.5e-65 251.9 203 63.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.2e-64 250.8 202 65.8
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 6.1e-64 248.4 240 60.8
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 4.0e-63 245.7 204 61.8
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.0e-62 243.4 203 66.5
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 2.2e-61 240.0 203 61.1
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.8e-60 236.9 174 67.2
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 9.5e-57 224.6 196 57.7
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.0e-55 219.2 153 75.2
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.4e-54 216.1 203 61.1
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 7.0e-52 208.4 173 63.6
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.0e-46 190.3 203 48.8
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.0e-46 190.3 203 48.8
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.2e-45 186.8 219 52.1
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 4.9e-45 185.7 203 50.2
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 2.0e-43 180.3 130 76.2
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.6e-43 179.1 145 67.6
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 4.0e-39 166.0 199 54.8
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.7e-37 160.6 172 53.5
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 3.2e-36 156.4 197 45.2
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.7e-35 153.3 161 52.2
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.3e-34 151.0 93 83.9
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 6.6e-34 148.7 151 49.7
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 8.9e-31 138.3 205 39.5
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 8.9e-31 138.3 187 44.9
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 8.9e-31 138.3 99 71.7
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.9e-25 120.6 73 80.8
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.1e-23 114.8 128 50.8
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.1e-23 113.2 187 41.7
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 6.0e-19 99.0 68 69.1
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 6.6e-18 95.5 60 73.3
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 6.4e-13 79.0 217 29.0
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 2.4e-12 77.0 62 71.0
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.2e-11 74.7 61 63.9
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 3.3e-09 66.6 136 29.4
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.8e-07 60.8 202 28.2
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 7.6e-06 55.5 164 23.8


User provided reference genes

Program Settings